Wall clock time and date at job start Mon Mar 30 2020 02:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 120.00093 * 2 1 4 4 N 1.46897 * 109.46891 * 126.34405 * 3 2 1 5 5 C 1.46898 * 110.99875 * 163.04134 * 4 3 2 6 6 C 1.50707 * 109.47084 * 293.95456 * 5 4 3 7 7 H 1.07998 * 119.99807 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99754 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00229 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99584 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47168 * 90.00159 * 10 8 6 12 12 H 1.48498 * 109.47340 * 210.00102 * 10 8 6 13 13 H 1.48496 * 109.47386 * 330.00153 * 10 8 6 14 14 C 1.46903 * 111.00101 * 286.99323 * 4 3 2 15 15 H 1.08996 * 110.73031 * 304.77508 * 14 4 3 16 16 C 1.54343 * 110.82214 * 68.17820 * 14 4 3 17 17 C 1.51366 * 105.16996 * 144.57038 * 16 14 4 18 18 C 1.38504 * 130.39251 * 162.80912 * 17 16 14 19 19 C 1.38101 * 120.21332 * 180.02562 * 18 17 16 20 20 C 1.38250 * 119.93641 * 0.02562 * 19 18 17 21 21 C 1.38098 * 119.93666 * 359.97438 * 20 19 18 22 22 C 1.38217 * 109.75978 * 342.81457 * 17 16 14 23 23 C 1.51676 * 109.83938 * 0.15834 * 22 17 16 24 24 H 1.09001 * 110.49723 * 135.85044 * 23 22 17 25 25 O 1.42897 * 110.25707 * 258.10573 * 23 22 17 26 26 H 1.07999 * 119.99983 * 359.72397 * 1 2 3 27 27 H 1.07999 * 119.99540 * 179.72164 * 1 2 3 28 28 H 1.07999 * 119.99983 * 180.27603 * 2 1 3 29 29 H 1.09000 * 109.46757 * 246.34870 * 3 2 1 30 30 H 1.08997 * 109.46488 * 6.34306 * 3 2 1 31 31 H 1.09001 * 109.47480 * 53.95304 * 5 4 3 32 32 H 1.08999 * 109.47499 * 173.95339 * 5 4 3 33 33 H 0.97004 * 119.99544 * 180.02562 * 9 8 6 34 34 H 1.08994 * 110.30532 * 263.50006 * 16 14 4 35 35 H 1.09003 * 110.30504 * 25.55250 * 16 14 4 36 36 H 1.07998 * 119.88802 * 0.03305 * 18 17 16 37 37 H 1.08002 * 120.03053 * 180.02562 * 19 18 17 38 38 H 1.08004 * 120.03291 * 180.02562 * 20 19 18 39 39 H 1.08000 * 119.89254 * 180.02562 * 21 20 19 40 40 H 0.96696 * 113.99691 * 290.40349 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0192 1.3187 1.1156 5 6 4.0347 2.3631 0.9261 6 6 4.8857 2.0251 -0.2709 7 1 4.6912 1.1247 -0.8347 8 6 5.9117 2.8659 -0.6468 9 7 6.1475 3.9630 0.0389 10 14 6.9669 2.4465 -2.1301 11 1 6.3648 3.0417 -3.3501 12 1 8.3339 2.9931 -1.9356 13 1 7.0409 0.9714 -2.2838 14 6 2.3264 1.4850 2.4003 15 1 1.7039 2.3796 2.3899 16 6 1.4852 0.2352 2.7357 17 6 1.5794 0.0862 4.2391 18 6 0.7963 -0.6416 5.1197 19 6 1.0747 -0.6270 6.4723 20 6 2.1379 0.1165 6.9499 21 6 2.9198 0.8427 6.0735 22 6 2.6429 0.8287 4.7166 23 6 3.3367 1.5329 3.5662 24 1 3.5603 2.5665 3.8305 25 8 4.5353 0.8400 3.2125 26 1 -0.5400 0.9353 0.0045 27 1 -0.5399 -0.9353 -0.0045 28 1 1.8500 -0.9353 -0.0045 29 1 2.6022 1.4136 -0.9414 30 1 1.3606 2.1304 0.1135 31 1 3.5434 3.3224 0.7633 32 1 4.6641 2.4233 1.8140 33 1 6.8692 4.5547 -0.2259 34 1 0.4485 0.3850 2.4347 35 1 1.8989 -0.6433 2.2405 36 1 -0.0346 -1.2223 4.7473 37 1 0.4623 -1.1959 7.1563 38 1 2.3572 0.1286 8.0074 39 1 3.7505 1.4230 6.4473 40 1 5.2363 0.9033 3.8755 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292097583.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:57 Heat of formation + Delta-G solvation = 15.398328 kcal Electronic energy + Delta-G solvation = -21328.163550 eV Core-core repulsion = 18301.668981 eV Total energy + Delta-G solvation = -3026.494568 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.19753 -37.54587 -35.68433 -33.55422 -33.13149 -31.82995 -30.92155 -28.26138 -26.73801 -26.20889 -24.41319 -22.27388 -21.23439 -20.73529 -19.49663 -19.32992 -17.13297 -16.46221 -16.12428 -15.23018 -15.14574 -14.70917 -14.51337 -13.94244 -13.80598 -13.54651 -13.45165 -12.86706 -12.66573 -12.49735 -12.31509 -11.80637 -11.80088 -11.46349 -11.18356 -10.88110 -10.74590 -10.70976 -10.56982 -10.41908 -10.15931 -9.72891 -9.47000 -9.12734 -8.76516 -8.73443 -8.44789 -8.32378 -7.18055 -5.95897 -3.94607 1.42533 1.48144 2.70170 3.35551 3.41855 3.47005 3.83660 4.44868 4.53051 4.68564 4.95904 4.98517 5.08577 5.11745 5.31419 5.39581 5.42610 5.51995 5.61788 5.64349 5.74725 5.90991 5.97491 6.04216 6.10228 6.19030 6.30325 6.43750 6.49948 6.52112 6.54934 6.60968 6.83002 7.03964 7.08102 7.09452 7.39673 7.49480 7.87499 8.13125 8.28040 8.32032 8.64775 9.12051 9.67898 11.15282 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.021079 B = 0.005552 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.018093 B = 5041.761920 C = 6068.933850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.113 4.113 3 C 0.077 3.923 4 N -0.505 5.505 5 C 0.192 3.808 6 C -0.497 4.497 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.901 5.901 10 Si 0.894 3.106 11 H -0.283 1.283 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.093 3.907 15 H 0.049 0.951 16 C -0.074 4.074 17 C -0.072 4.072 18 C -0.116 4.116 19 C -0.118 4.118 20 C -0.132 4.132 21 C -0.099 4.099 22 C -0.131 4.131 23 C 0.154 3.846 24 H 0.059 0.941 25 O -0.512 6.512 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.024 0.976 31 H -0.019 1.019 32 H 0.052 0.948 33 H 0.259 0.741 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.165 -6.754 10.561 16.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.131 4.131 3 C -0.051 4.051 4 N -0.230 5.230 5 C 0.067 3.933 6 C -0.536 4.536 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.542 5.542 10 Si 0.723 3.277 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.017 4.017 15 H 0.066 0.934 16 C -0.111 4.111 17 C -0.073 4.073 18 C -0.134 4.134 19 C -0.136 4.136 20 C -0.150 4.150 21 C -0.117 4.117 22 C -0.132 4.132 23 C 0.094 3.906 24 H 0.077 0.923 25 O -0.314 6.314 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.127 0.873 29 H 0.116 0.884 30 H 0.042 0.958 31 H -0.001 1.001 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -10.125 -7.176 10.017 15.949 hybrid contribution 0.498 0.775 -0.126 0.930 sum -9.627 -6.401 9.891 15.215 Atomic orbital electron populations 1.23642 0.95940 1.00918 1.06027 1.23165 0.95256 0.99594 0.95098 1.21274 0.93826 0.92508 0.97470 1.62105 1.12046 1.51157 0.97656 1.19844 0.88721 0.86047 0.98651 1.21140 1.13977 1.07034 1.11404 0.92031 1.24935 0.97457 0.95115 0.97074 1.69956 1.31542 1.12691 1.39987 0.86555 0.79673 0.78647 0.82870 1.20917 1.21388 1.19820 1.22251 0.92736 0.95642 0.91045 0.93378 1.21393 0.99971 0.99900 0.89806 1.20759 0.94784 0.95352 0.96361 1.20620 0.99919 1.00023 0.92853 1.20996 0.97879 0.99585 0.95165 1.20964 0.96342 0.98404 0.99257 1.20649 0.99590 0.99368 0.92070 1.21513 0.97574 0.99585 0.94479 1.21116 0.85981 0.93511 0.89968 0.92334 1.86946 1.22722 1.75494 1.46224 0.89291 0.89198 0.87339 0.88424 0.95825 1.00092 0.93007 0.93140 0.90929 0.88522 0.86434 0.86235 0.86217 0.86441 0.79237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.10 12.93 29.01 0.38 -2.73 16 2 C -0.11 -1.81 6.79 -36.02 -0.24 -2.05 16 3 C 0.08 1.49 5.26 -4.98 -0.03 1.47 16 4 N -0.51 -10.84 3.90 -227.83 -0.89 -11.73 16 5 C 0.19 4.95 4.23 -4.97 -0.02 4.92 16 6 C -0.50 -13.92 8.27 -34.44 -0.28 -14.21 16 7 H 0.06 1.72 7.27 -52.49 -0.38 1.34 16 8 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 10 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.09 1.72 2.66 -66.30 -0.18 1.54 16 15 H 0.05 0.89 8.05 -51.93 -0.42 0.47 16 16 C -0.07 -1.17 4.60 -26.85 -0.12 -1.29 16 17 C -0.07 -1.09 6.14 -104.20 -0.64 -1.73 16 18 C -0.12 -1.50 10.04 -39.53 -0.40 -1.89 16 19 C -0.12 -1.36 10.05 -39.63 -0.40 -1.76 16 20 C -0.13 -1.53 10.05 -39.63 -0.40 -1.93 16 21 C -0.10 -1.30 10.04 -39.54 -0.40 -1.70 16 22 C -0.13 -2.02 5.82 -104.05 -0.61 -2.63 16 23 C 0.15 2.72 3.11 -26.70 -0.08 2.64 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 25 O -0.51 -9.87 10.92 -35.23 -0.38 -10.26 16 26 H 0.09 1.18 7.85 -52.49 -0.41 0.77 16 27 H 0.09 1.06 8.06 -52.49 -0.42 0.64 16 28 H 0.11 1.76 7.99 -52.49 -0.42 1.34 16 29 H 0.10 2.09 6.58 -51.93 -0.34 1.75 16 30 H 0.02 0.45 7.63 -51.93 -0.40 0.05 16 31 H -0.02 -0.52 8.12 -51.93 -0.42 -0.94 16 32 H 0.05 1.41 5.58 -51.93 -0.29 1.12 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.07 1.06 6.71 -51.93 -0.35 0.71 16 35 H 0.10 1.66 6.90 -51.93 -0.36 1.30 16 36 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 39 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 40 H 0.36 5.48 9.12 45.56 0.42 5.90 16 LS Contribution 322.94 15.07 4.87 4.87 Total: -1.00 -31.08 322.94 -9.25 -40.33 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -5.04 Total: 5.89 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -3.52 Total: -19.90 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: -0.15 Total: -37.70 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -0.38 Total: -10.26 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.08 -9.25 -40.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292097583.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.725 kcal (2) G-P(sol) polarization free energy of solvation -31.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds