Wall clock time and date at job start Mon Mar 30 2020 02:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 120.00093 * 2 1 4 4 N 1.46897 * 109.46891 * 126.34405 * 3 2 1 5 5 C 1.46898 * 110.99875 * 163.04134 * 4 3 2 6 6 C 1.50707 * 109.47084 * 293.95456 * 5 4 3 7 7 H 1.07998 * 119.99807 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99754 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00229 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99584 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47168 * 90.00159 * 10 8 6 12 12 H 1.48498 * 109.47340 * 210.00102 * 10 8 6 13 13 H 1.48496 * 109.47386 * 330.00153 * 10 8 6 14 14 C 1.46903 * 111.00101 * 286.99323 * 4 3 2 15 15 H 1.08996 * 110.73031 * 304.77508 * 14 4 3 16 16 C 1.54343 * 110.82214 * 68.17820 * 14 4 3 17 17 C 1.51366 * 105.16996 * 144.57038 * 16 14 4 18 18 C 1.38504 * 130.39251 * 162.80912 * 17 16 14 19 19 C 1.38101 * 120.21332 * 180.02562 * 18 17 16 20 20 C 1.38250 * 119.93641 * 0.02562 * 19 18 17 21 21 C 1.38098 * 119.93666 * 359.97438 * 20 19 18 22 22 C 1.38217 * 109.75978 * 342.81457 * 17 16 14 23 23 C 1.51676 * 109.83938 * 0.15834 * 22 17 16 24 24 H 1.09001 * 110.49723 * 135.85044 * 23 22 17 25 25 O 1.42897 * 110.25707 * 258.10573 * 23 22 17 26 26 H 1.07999 * 119.99983 * 359.72397 * 1 2 3 27 27 H 1.07999 * 119.99540 * 179.72164 * 1 2 3 28 28 H 1.07999 * 119.99983 * 180.27603 * 2 1 3 29 29 H 1.09000 * 109.46757 * 246.34870 * 3 2 1 30 30 H 1.08997 * 109.46488 * 6.34306 * 3 2 1 31 31 H 1.09001 * 109.47480 * 53.95304 * 5 4 3 32 32 H 1.08999 * 109.47499 * 173.95339 * 5 4 3 33 33 H 0.97004 * 119.99544 * 180.02562 * 9 8 6 34 34 H 1.08994 * 110.30532 * 263.50006 * 16 14 4 35 35 H 1.09003 * 110.30504 * 25.55250 * 16 14 4 36 36 H 1.07998 * 119.88802 * 0.03305 * 18 17 16 37 37 H 1.08002 * 120.03053 * 180.02562 * 19 18 17 38 38 H 1.08004 * 120.03291 * 180.02562 * 20 19 18 39 39 H 1.08000 * 119.89254 * 180.02562 * 21 20 19 40 40 H 0.96696 * 113.99691 * 290.40349 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0192 1.3187 1.1156 5 6 4.0347 2.3631 0.9261 6 6 4.8857 2.0251 -0.2709 7 1 4.6912 1.1247 -0.8347 8 6 5.9117 2.8659 -0.6468 9 7 6.1475 3.9630 0.0389 10 14 6.9669 2.4465 -2.1301 11 1 6.3648 3.0417 -3.3501 12 1 8.3339 2.9931 -1.9356 13 1 7.0409 0.9714 -2.2838 14 6 2.3264 1.4850 2.4003 15 1 1.7039 2.3796 2.3899 16 6 1.4852 0.2352 2.7357 17 6 1.5794 0.0862 4.2391 18 6 0.7963 -0.6416 5.1197 19 6 1.0747 -0.6270 6.4723 20 6 2.1379 0.1165 6.9499 21 6 2.9198 0.8427 6.0735 22 6 2.6429 0.8287 4.7166 23 6 3.3367 1.5329 3.5662 24 1 3.5603 2.5665 3.8305 25 8 4.5353 0.8400 3.2125 26 1 -0.5400 0.9353 0.0045 27 1 -0.5399 -0.9353 -0.0045 28 1 1.8500 -0.9353 -0.0045 29 1 2.6022 1.4136 -0.9414 30 1 1.3606 2.1304 0.1135 31 1 3.5434 3.3224 0.7633 32 1 4.6641 2.4233 1.8140 33 1 6.8692 4.5547 -0.2259 34 1 0.4485 0.3850 2.4347 35 1 1.8989 -0.6433 2.2405 36 1 -0.0346 -1.2223 4.7473 37 1 0.4623 -1.1959 7.1563 38 1 2.3572 0.1286 8.0074 39 1 3.7505 1.4230 6.4473 40 1 5.2363 0.9033 3.8755 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292097583.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:56 Heat of formation + Delta-G solvation = -4.809226 kcal Electronic energy + Delta-G solvation = -21329.039815 eV Core-core repulsion = 18301.668981 eV Total energy + Delta-G solvation = -3027.370834 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.41320 -38.90167 -37.13220 -35.21002 -34.60948 -33.56148 -31.95555 -29.72207 -28.41768 -27.56399 -26.03005 -23.82708 -22.59554 -21.83119 -20.96895 -20.67651 -18.53001 -18.48481 -17.32965 -16.82084 -16.44218 -16.11885 -16.06477 -15.26234 -15.21602 -15.04275 -14.68454 -14.13119 -14.11012 -13.93505 -13.77171 -13.37789 -13.36368 -12.84486 -12.69657 -12.59585 -12.36815 -12.19304 -12.07338 -11.82211 -11.74986 -11.41748 -11.20717 -10.83768 -10.54481 -10.00699 -9.75168 -9.49673 -8.95593 -8.15520 -6.22512 0.40716 0.48972 1.40544 1.41976 1.48038 1.53868 2.42648 2.82659 3.16029 3.17795 3.31822 3.69142 3.69849 3.98594 4.11748 4.16679 4.24105 4.26999 4.31623 4.48127 4.59074 4.66434 4.74073 4.81818 4.89229 4.91799 5.00999 5.10443 5.15919 5.23313 5.33977 5.43341 5.53805 5.60288 5.69431 5.76773 5.79873 5.93206 6.11747 6.15403 6.44909 6.68054 6.92336 6.96926 7.45011 8.95708 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.021079 B = 0.005552 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.018093 B = 5041.761920 C = 6068.933850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.136 4.136 3 C 0.080 3.920 4 N -0.511 5.511 5 C 0.209 3.791 6 C -0.512 4.512 7 H 0.056 0.944 8 C 0.003 3.997 9 N -0.935 5.935 10 Si 0.964 3.036 11 H -0.274 1.274 12 H -0.282 1.282 13 H -0.268 1.268 14 C 0.083 3.917 15 H 0.041 0.959 16 C -0.056 4.056 17 C -0.093 4.093 18 C -0.118 4.118 19 C -0.112 4.112 20 C -0.127 4.127 21 C -0.107 4.107 22 C -0.150 4.150 23 C 0.153 3.847 24 H 0.044 0.956 25 O -0.539 6.539 26 H 0.095 0.905 27 H 0.120 0.880 28 H 0.107 0.893 29 H 0.068 0.932 30 H 0.023 0.977 31 H -0.054 1.054 32 H 0.033 0.967 33 H 0.262 0.738 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.140 0.860 37 H 0.155 0.845 38 H 0.152 0.848 39 H 0.129 0.871 40 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.815 -8.745 11.749 18.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.154 4.154 3 C -0.048 4.048 4 N -0.235 5.235 5 C 0.084 3.916 6 C -0.550 4.550 7 H 0.074 0.926 8 C -0.194 4.194 9 N -0.576 5.576 10 Si 0.789 3.211 11 H -0.199 1.199 12 H -0.207 1.207 13 H -0.193 1.193 14 C -0.026 4.026 15 H 0.059 0.941 16 C -0.093 4.093 17 C -0.093 4.093 18 C -0.136 4.136 19 C -0.130 4.130 20 C -0.145 4.145 21 C -0.125 4.125 22 C -0.151 4.151 23 C 0.093 3.907 24 H 0.062 0.938 25 O -0.343 6.343 26 H 0.113 0.887 27 H 0.138 0.862 28 H 0.125 0.875 29 H 0.086 0.914 30 H 0.041 0.959 31 H -0.037 1.037 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.158 0.842 37 H 0.173 0.827 38 H 0.169 0.831 39 H 0.147 0.853 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -11.792 -9.179 11.214 18.684 hybrid contribution 0.920 1.405 -0.396 1.726 sum -10.872 -7.774 10.819 17.195 Atomic orbital electron populations 1.23882 0.94782 1.02593 1.01420 1.22803 0.95970 0.97429 0.99233 1.21215 0.93315 0.94852 0.95401 1.62025 1.12731 1.48999 0.99708 1.19456 0.89347 0.85706 0.97126 1.21415 1.14585 1.06912 1.12133 0.92563 1.25804 0.98716 0.94874 1.00051 1.70083 1.32218 1.13664 1.41670 0.85464 0.77832 0.78570 0.79230 1.19921 1.20735 1.19264 1.22375 0.93379 0.97027 0.89820 0.94122 1.21152 0.99751 0.97524 0.90870 1.20789 0.95788 0.96877 0.95880 1.20920 0.99998 0.99459 0.93241 1.21454 0.97655 0.98807 0.95067 1.21378 0.95554 0.97031 1.00553 1.20896 1.00441 0.99898 0.91314 1.21305 0.98200 1.00764 0.94806 1.21065 0.85563 0.93110 0.90915 0.93799 1.86863 1.23944 1.75754 1.47781 0.88670 0.86163 0.87524 0.91394 0.95897 1.03666 0.94891 0.92921 0.89528 0.89812 0.84193 0.82716 0.83074 0.85268 0.77696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.69 12.93 67.78 0.88 -3.82 16 2 C -0.14 -4.32 6.79 25.65 0.17 -4.14 16 3 C 0.08 3.24 5.26 85.56 0.45 3.69 16 4 N -0.51 -23.17 3.90 -874.71 -3.41 -26.58 16 5 C 0.21 11.55 4.23 85.56 0.36 11.91 16 6 C -0.51 -30.03 8.27 25.60 0.21 -29.82 16 7 H 0.06 3.28 7.27 -2.91 -0.02 3.26 16 8 C 0.00 0.17 5.46 84.65 0.46 0.63 16 9 N -0.94 -57.36 13.29 21.45 0.28 -57.07 16 10 Si 0.96 45.66 29.54 68.60 2.03 47.68 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 14 C 0.08 3.22 2.66 45.83 0.12 3.34 16 15 H 0.04 1.61 8.05 -2.39 -0.02 1.59 16 16 C -0.06 -1.77 4.60 30.52 0.14 -1.62 16 17 C -0.09 -2.71 6.14 -19.59 -0.12 -2.83 16 18 C -0.12 -2.68 10.04 22.30 0.22 -2.46 16 19 C -0.11 -2.11 10.05 22.24 0.22 -1.89 16 20 C -0.13 -2.52 10.05 22.24 0.22 -2.30 16 21 C -0.11 -2.68 10.04 22.30 0.22 -2.46 16 22 C -0.15 -4.63 5.82 -19.50 -0.11 -4.74 16 23 C 0.15 5.70 3.11 30.62 0.10 5.80 16 24 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 25 O -0.54 -22.02 10.92 -148.98 -1.63 -23.65 16 26 H 0.09 2.28 7.85 -2.91 -0.02 2.26 16 27 H 0.12 2.34 8.06 -2.91 -0.02 2.32 16 28 H 0.11 3.44 7.99 -2.91 -0.02 3.42 16 29 H 0.07 3.10 6.58 -2.39 -0.02 3.09 16 30 H 0.02 0.91 7.63 -2.39 -0.02 0.89 16 31 H -0.05 -3.28 8.12 -2.39 -0.02 -3.30 16 32 H 0.03 1.93 5.58 -2.39 -0.01 1.92 16 33 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 34 H 0.09 2.40 6.71 -2.39 -0.02 2.38 16 35 H 0.08 2.86 6.90 -2.39 -0.02 2.85 16 36 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 37 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 38 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.13 2.79 8.06 -2.91 -0.02 2.77 16 40 H 0.38 12.19 9.12 -74.06 -0.68 11.51 16 Total: -1.00 -69.99 322.94 1.18 -68.81 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.35 Total: 21.52 kcal Atomic # 6 Polarization: -34.26 SS G_CDS: 3.55 Total: -30.70 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -3.13 Total: -83.65 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -1.63 Total: -23.65 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -69.99 1.18 -68.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292097583.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.000 kcal (2) G-P(sol) polarization free energy of solvation -69.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds