Wall clock time and date at job start Mon Mar 30 2020 02:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00546 * 2 1 4 4 N 1.46903 * 109.46888 * 125.14471 * 3 2 1 5 5 C 1.46904 * 110.99679 * 199.64536 * 4 3 2 6 6 C 1.50703 * 109.46840 * 66.05155 * 5 4 3 7 7 H 1.07997 * 120.00393 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00084 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99771 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00495 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47040 * 89.99537 * 10 8 6 12 12 H 1.48498 * 109.47199 * 210.00091 * 10 8 6 13 13 H 1.48508 * 109.46782 * 329.99766 * 10 8 6 14 14 C 1.46899 * 110.99728 * 75.69377 * 4 3 2 15 15 C 1.53004 * 109.46974 * 199.68426 * 14 4 3 16 16 C 1.50693 * 109.47089 * 174.91464 * 15 14 4 17 17 O 1.21261 * 120.00126 * 0.02562 * 16 15 14 18 18 C 1.47168 * 119.99820 * 180.02562 * 16 15 14 19 19 C 1.39854 * 120.16856 * 180.02562 * 18 16 15 20 20 C 1.37891 * 119.82382 * 179.97438 * 19 18 16 21 21 C 1.38398 * 120.16902 * 359.97438 * 20 19 18 22 22 C 1.38400 * 120.35206 * 0.04391 * 21 20 19 23 23 C 1.37883 * 120.17525 * 359.96206 * 22 21 20 24 24 H 1.08001 * 120.00546 * 179.97438 * 1 2 3 25 25 H 1.07999 * 119.99719 * 359.97438 * 1 2 3 26 26 H 1.07999 * 119.99719 * 180.02562 * 2 1 3 27 27 H 1.09005 * 109.46766 * 5.14609 * 3 2 1 28 28 H 1.08998 * 109.47260 * 245.15103 * 3 2 1 29 29 H 1.09000 * 109.46937 * 186.04437 * 5 4 3 30 30 H 1.08996 * 109.47290 * 306.05024 * 5 4 3 31 31 H 0.96998 * 120.00312 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.47172 * 79.68884 * 14 4 3 33 33 H 1.09000 * 109.47390 * 319.68628 * 14 4 3 34 34 H 1.08998 * 109.46737 * 54.91141 * 15 14 4 35 35 H 1.08997 * 109.46779 * 294.91850 * 15 14 4 36 36 H 1.08004 * 120.08762 * 359.70356 * 19 18 16 37 37 H 1.07996 * 119.91347 * 179.97438 * 20 19 18 38 38 H 1.08008 * 119.82535 * 180.02562 * 21 20 19 39 39 H 1.08004 * 119.91396 * 179.97438 * 22 21 20 40 40 H 1.07999 * 120.09438 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9989 1.3303 1.1325 5 6 3.4019 2.7065 1.4518 6 6 2.2078 3.4754 1.9557 7 1 1.2457 2.9906 2.0309 8 6 2.3436 4.7981 2.3208 9 7 3.5153 5.3884 2.2297 10 14 0.8634 5.7515 2.9447 11 1 0.7707 5.6117 4.4202 12 1 1.0141 7.1861 2.5919 13 1 -0.3712 5.2146 2.3180 14 6 4.1715 0.4868 0.8657 15 6 4.8600 0.1378 2.1868 16 6 5.9873 -0.8276 1.9261 17 8 6.2178 -1.1995 0.7952 18 6 6.8086 -1.3190 3.0441 19 6 7.8560 -2.2146 2.8062 20 6 8.6213 -2.6701 3.8589 21 6 8.3554 -2.2428 5.1481 22 6 7.3204 -1.3570 5.3918 23 6 6.5459 -0.8924 4.3498 24 1 -0.5401 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3589 2.1315 0.0922 28 1 2.6193 1.4037 -0.9325 29 1 4.1742 2.6897 2.2208 30 1 3.7922 3.1880 0.5552 31 1 3.6108 6.3190 2.4862 32 1 4.8686 1.0259 0.2242 33 1 3.8543 -0.4297 0.3682 34 1 4.1380 -0.3205 2.8627 35 1 5.2568 1.0459 2.6406 36 1 8.0622 -2.5519 1.8011 37 1 9.4303 -3.3620 3.6768 38 1 8.9586 -2.6029 5.9685 39 1 7.1188 -1.0285 6.4007 40 1 5.7388 -0.2009 4.5414 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292180379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:49 Heat of formation + Delta-G solvation = 7.963184 kcal Electronic energy + Delta-G solvation = -20074.276745 eV Core-core repulsion = 17047.459765 eV Total energy + Delta-G solvation = -3026.816980 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.00645 -38.23960 -37.00122 -33.29115 -32.69275 -31.76664 -31.08226 -30.05217 -27.13420 -25.33734 -23.91087 -22.88350 -22.18010 -20.43693 -19.43386 -19.01665 -17.33651 -16.45973 -15.82907 -15.61748 -15.25866 -14.87903 -14.65989 -14.46632 -13.98966 -13.75168 -13.63375 -13.41379 -12.90069 -12.66119 -12.37230 -12.10982 -11.81226 -11.71891 -11.42611 -11.16887 -10.92685 -10.87891 -10.66281 -10.59070 -10.18525 -9.80950 -9.52261 -9.20593 -9.13055 -9.07904 -8.87509 -8.44765 -7.25996 -6.04380 -4.05622 0.62320 1.24221 2.48115 2.77519 3.31062 3.37363 3.40940 3.73034 4.05184 4.42327 4.69718 4.79306 4.91069 5.06759 5.23328 5.29943 5.31341 5.35578 5.45480 5.53334 5.66388 5.72937 5.80950 5.89673 6.09338 6.10907 6.21275 6.28679 6.30429 6.32306 6.36741 6.49698 6.59221 6.74996 7.08361 7.22794 7.32663 7.34726 7.65611 7.80035 8.06414 8.18926 8.53040 9.02654 9.58805 11.06385 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.015789 B = 0.004358 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.907320 B = 6423.898266 C = 7594.983368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C 0.083 3.917 4 N -0.534 5.534 5 C 0.190 3.810 6 C -0.508 4.508 7 H 0.064 0.936 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.065 3.935 15 C -0.158 4.158 16 C 0.398 3.602 17 O -0.458 6.458 18 C -0.165 4.165 19 C -0.066 4.066 20 C -0.137 4.137 21 C -0.094 4.094 22 C -0.134 4.134 23 C -0.068 4.068 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.029 0.971 29 H 0.032 0.968 30 H -0.009 1.009 31 H 0.261 0.739 32 H 0.031 0.969 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.486 -14.418 3.751 16.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.148 4.148 3 C -0.044 4.044 4 N -0.258 5.258 5 C 0.065 3.935 6 C -0.546 4.546 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.206 1.206 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.064 4.064 15 C -0.196 4.196 16 C 0.276 3.724 17 O -0.334 6.334 18 C -0.166 4.166 19 C -0.084 4.084 20 C -0.155 4.155 21 C -0.112 4.112 22 C -0.152 4.152 23 C -0.086 4.086 24 H 0.107 0.893 25 H 0.114 0.886 26 H 0.116 0.884 27 H 0.110 0.890 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.009 0.991 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.147 0.853 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.455 -14.603 3.586 16.364 hybrid contribution -0.199 0.954 -0.107 0.981 sum 6.256 -13.649 3.479 15.412 Atomic orbital electron populations 1.23686 0.95947 1.01153 1.03327 1.22998 0.95838 0.98526 0.97407 1.21172 0.95974 0.95514 0.91783 1.62099 1.12868 1.14047 1.36753 1.19798 0.96700 0.81608 0.95358 1.21174 0.95711 0.95034 1.42706 0.91777 1.24980 0.95961 0.97662 0.95910 1.69959 1.22936 1.12281 1.48619 0.86524 0.82928 0.78952 0.79173 1.20635 1.21359 1.19845 1.21796 0.92591 0.97677 0.94335 1.21992 0.96572 0.99693 1.01318 1.22716 0.83132 0.79244 0.87323 1.90483 1.66396 1.51792 1.24753 1.20673 0.99312 1.01389 0.95214 1.21449 0.92991 0.94205 0.99767 1.21127 1.00426 1.01222 0.92761 1.21406 0.96751 0.96144 0.96931 1.21189 0.96166 0.98367 0.99471 1.21637 0.98358 0.97172 0.91480 0.89336 0.88623 0.88424 0.88957 0.95256 0.94953 0.99110 0.92929 0.95092 0.91620 0.87590 0.87781 0.85076 0.85653 0.85794 0.85334 0.84372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.12 14.32 29.02 0.42 -2.70 16 2 C -0.13 -2.17 9.33 -36.03 -0.34 -2.51 16 3 C 0.08 1.65 5.24 -4.97 -0.03 1.62 16 4 N -0.53 -11.33 4.35 -237.51 -1.03 -12.36 16 5 C 0.19 4.83 4.55 -4.97 -0.02 4.80 16 6 C -0.51 -13.90 8.23 -34.44 -0.28 -14.19 16 7 H 0.06 1.75 7.31 -52.49 -0.38 1.37 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.22 13.29 55.43 0.74 -25.49 16 10 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 14 C 0.06 1.20 4.15 -3.82 -0.02 1.19 16 15 C -0.16 -2.53 4.35 -27.88 -0.12 -2.65 16 16 C 0.40 6.09 7.12 -30.69 -0.22 5.87 16 17 O -0.46 -8.09 15.91 5.57 0.09 -8.00 16 18 C -0.16 -2.17 5.87 -105.06 -0.62 -2.79 16 19 C -0.07 -0.78 9.60 -39.10 -0.38 -1.16 16 20 C -0.14 -1.33 10.03 -39.65 -0.40 -1.72 16 21 C -0.09 -0.85 10.04 -39.46 -0.40 -1.24 16 22 C -0.13 -1.31 10.03 -39.65 -0.40 -1.71 16 23 C -0.07 -0.79 9.47 -39.11 -0.37 -1.16 16 24 H 0.09 1.16 8.06 -52.49 -0.42 0.73 16 25 H 0.10 1.49 7.84 -52.49 -0.41 1.08 16 26 H 0.10 1.54 7.27 -52.49 -0.38 1.15 16 27 H 0.09 1.99 6.23 -51.93 -0.32 1.67 16 28 H 0.03 0.57 8.00 -51.93 -0.42 0.16 16 29 H 0.03 0.85 6.71 -51.93 -0.35 0.50 16 30 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 31 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.03 0.62 8.00 -51.93 -0.42 0.20 16 33 H 0.07 1.16 6.62 -51.93 -0.34 0.82 16 34 H 0.11 1.58 8.09 -51.93 -0.42 1.16 16 35 H 0.10 1.73 6.90 -51.93 -0.36 1.37 16 36 H 0.13 1.53 7.65 -52.48 -0.40 1.13 16 37 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 39 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 40 H 0.14 1.49 7.05 -52.49 -0.37 1.12 16 LS Contribution 338.52 15.07 5.10 5.10 Total: -1.00 -30.63 338.52 -9.21 -39.84 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.82 Total: 1.49 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -3.26 Total: -16.88 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: -0.30 Total: -37.85 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: 0.09 Total: -8.00 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.63 -9.21 -39.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292180379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.805 kcal (2) G-P(sol) polarization free energy of solvation -30.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds