Wall clock time and date at job start Mon Mar 30 2020 01:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99995 * 2 1 4 4 N 1.46500 * 109.47281 * 124.99556 * 3 2 1 5 5 C 1.46505 * 120.00160 * 278.10284 * 4 3 2 6 6 C 1.50696 * 109.46675 * 269.99864 * 5 4 3 7 7 H 1.08002 * 120.00419 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99637 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00124 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00055 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46803 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46998 * 120.00024 * 10 8 6 13 13 H 1.48493 * 109.47230 * 240.00492 * 10 8 6 14 14 C 1.34775 * 119.99965 * 98.09895 * 4 3 2 15 15 O 1.21556 * 120.00230 * 186.12468 * 14 4 3 16 16 C 1.47846 * 119.99944 * 6.12422 * 14 4 3 17 17 C 1.39584 * 120.14379 * 150.44497 * 16 14 4 18 18 C 1.37950 * 119.85112 * 180.02562 * 17 16 14 19 19 C 1.38360 * 120.14869 * 0.02562 * 18 17 16 20 20 C 1.50701 * 119.85576 * 179.97438 * 19 18 17 21 21 C 1.53006 * 109.46622 * 90.00603 * 20 19 18 22 22 C 1.38359 * 120.29147 * 0.24281 * 19 18 17 23 23 C 1.37964 * 120.14480 * 359.47656 * 22 19 18 24 24 H 1.08003 * 119.99893 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.99952 * 179.97438 * 1 2 3 26 26 H 1.07993 * 120.00228 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.46954 * 4.99712 * 3 2 1 28 28 H 1.09001 * 109.47269 * 244.99938 * 3 2 1 29 29 H 1.08998 * 109.47082 * 29.99513 * 5 4 3 30 30 H 1.08997 * 109.47144 * 149.99976 * 5 4 3 31 31 H 0.97001 * 120.00101 * 179.97438 * 9 8 6 32 32 H 1.08001 * 120.07038 * 0.02562 * 17 16 14 33 33 H 1.08006 * 119.92779 * 180.02562 * 18 17 16 34 34 H 1.09001 * 109.47011 * 330.00752 * 20 19 18 35 35 H 1.08994 * 109.47298 * 210.00231 * 20 19 18 36 36 H 1.08994 * 109.46981 * 299.99822 * 21 20 19 37 37 H 1.09004 * 109.46703 * 180.02562 * 21 20 19 38 38 H 1.08991 * 109.47192 * 60.00215 * 21 20 19 39 39 H 1.07996 * 119.92642 * 179.74279 * 22 19 18 40 40 H 1.07995 * 120.07361 * 180.25605 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5130 1.6968 2.4665 6 6 2.6364 3.1868 2.6548 7 1 3.0335 3.8007 1.8599 8 6 2.2422 3.7665 3.8422 9 7 1.7591 3.0191 4.8104 10 14 2.3957 5.6135 4.0760 11 1 2.9645 6.2225 2.8468 12 1 1.0538 6.1923 4.3394 13 1 3.2905 5.8940 5.2275 14 6 4.2916 1.0210 0.9443 15 8 5.0396 0.9345 1.8985 16 6 4.8057 0.7851 -0.4217 17 6 6.1376 1.0688 -0.7281 18 6 6.6108 0.8469 -2.0048 19 6 5.7682 0.3448 -2.9806 20 6 6.2920 0.1055 -4.3733 21 6 6.8405 -1.3193 -4.4739 22 6 4.4455 0.0667 -2.6850 23 6 3.9611 0.2786 -1.4107 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9354 -0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6213 1.4026 -0.9314 29 1 1.4685 1.4028 2.5694 30 1 3.1107 1.1845 3.2204 31 1 1.4821 3.4269 5.6458 32 1 6.7962 1.4611 0.0327 33 1 7.6413 1.0656 -2.2431 34 1 7.0884 0.8176 -4.5893 35 1 5.4836 0.2352 -5.0928 36 1 7.6489 -1.4491 -3.7544 37 1 7.2197 -1.4923 -5.4811 38 1 6.0441 -2.0314 -4.2579 39 1 3.7920 -0.3211 -3.4523 40 1 2.9295 0.0573 -1.1802 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292574051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:44 Heat of formation + Delta-G solvation = 28.005240 kcal Electronic energy + Delta-G solvation = -20673.750818 eV Core-core repulsion = 17647.802926 eV Total energy + Delta-G solvation = -3025.947892 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.14518 -38.18065 -35.94847 -34.15512 -33.17235 -32.08689 -30.92230 -29.75119 -27.43110 -25.83706 -24.44187 -22.89980 -22.38534 -21.01337 -20.12963 -18.88216 -16.82607 -16.51726 -16.26015 -15.59669 -15.05165 -14.77263 -14.53951 -14.22922 -13.83075 -13.76732 -13.51332 -13.13112 -12.91431 -12.79305 -12.36247 -12.08902 -11.82684 -11.57597 -11.28957 -11.26232 -11.10833 -11.00033 -10.88235 -10.61587 -10.49056 -10.18520 -9.64617 -9.28355 -9.01732 -8.76609 -8.50331 -8.42450 -7.68641 -6.04031 -4.08955 1.12895 1.47156 2.39573 3.29935 3.34053 3.37907 3.42395 3.88626 4.17637 4.44998 4.64115 4.75997 4.98705 5.06453 5.12248 5.18347 5.22956 5.30366 5.37991 5.38837 5.47050 5.54336 5.64247 5.70367 5.83919 5.94829 6.00186 6.05089 6.11057 6.20851 6.41245 6.56519 6.60707 6.76463 6.88401 7.00915 7.12504 7.46117 7.54332 7.92693 8.23514 8.38654 8.89129 9.06232 9.56089 11.04065 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.021599 B = 0.004728 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.062084 B = 5920.948961 C = 6628.755208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.178 4.178 3 C 0.106 3.894 4 N -0.584 5.584 5 C 0.246 3.754 6 C -0.528 4.528 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.546 3.454 15 O -0.538 6.538 16 C -0.122 4.122 17 C -0.064 4.064 18 C -0.128 4.128 19 C -0.073 4.073 20 C -0.085 4.085 21 C -0.147 4.147 22 C -0.129 4.129 23 C -0.118 4.118 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.109 0.891 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.034 0.966 30 H 0.046 0.954 31 H 0.263 0.737 32 H 0.131 0.869 33 H 0.123 0.877 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.123 0.877 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.436 -7.071 -18.774 20.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.197 4.197 3 C -0.018 4.018 4 N -0.313 5.313 5 C 0.127 3.873 6 C -0.567 4.567 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.333 3.667 15 O -0.416 6.416 16 C -0.125 4.125 17 C -0.083 4.083 18 C -0.146 4.146 19 C -0.073 4.073 20 C -0.123 4.123 21 C -0.204 4.204 22 C -0.147 4.147 23 C -0.136 4.136 24 H 0.119 0.881 25 H 0.114 0.886 26 H 0.126 0.874 27 H 0.102 0.898 28 H 0.121 0.879 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.149 0.851 33 H 0.141 0.859 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.141 0.859 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.743 -7.083 -18.034 19.733 hybrid contribution -0.060 1.033 0.318 1.083 sum 3.682 -6.049 -17.716 19.079 Atomic orbital electron populations 1.23853 0.95732 1.01923 0.99399 1.23347 0.96452 0.98992 1.00874 1.21401 0.93604 0.95277 0.91484 1.48093 1.06729 1.65283 1.11223 1.19317 0.95165 0.95674 0.77141 1.21484 1.42363 0.92404 1.00416 0.92356 1.24934 0.95073 0.98453 0.95598 1.69948 1.42757 1.35297 1.05230 0.86445 0.77658 0.85112 0.78247 1.19776 1.20943 1.20840 1.18235 0.82637 0.77950 0.87850 1.90740 1.56481 1.52023 1.42365 1.20264 0.94916 1.02622 0.94681 1.21247 0.94247 0.96387 0.96403 1.20943 0.99612 1.01209 0.92821 1.20032 0.93919 0.97688 0.95659 1.20564 1.00827 0.97744 0.93144 1.21748 1.01269 0.95874 1.01517 1.20965 0.95102 1.01850 0.96801 1.22428 1.01041 0.97356 0.92728 0.88133 0.88570 0.87359 0.89834 0.87935 0.94765 0.93632 0.92763 0.85066 0.85883 0.91052 0.91018 0.92482 0.92521 0.92482 0.85899 0.82420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 14.32 29.02 0.42 -1.81 16 2 C -0.18 -2.58 8.22 -36.02 -0.30 -2.88 16 3 C 0.11 1.79 5.33 -5.19 -0.03 1.76 16 4 N -0.58 -12.87 2.45 -177.55 -0.43 -13.30 16 5 C 0.25 6.58 5.21 -5.19 -0.03 6.55 16 6 C -0.53 -15.18 9.39 -34.44 -0.32 -15.50 16 7 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 10 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 C 0.55 12.20 7.46 -12.33 -0.09 12.11 16 15 O -0.54 -14.21 16.26 5.32 0.09 -14.13 16 16 C -0.12 -2.14 5.59 -104.96 -0.59 -2.72 16 17 C -0.06 -1.02 9.60 -39.19 -0.38 -1.39 16 18 C -0.13 -1.62 9.68 -39.64 -0.38 -2.00 16 19 C -0.07 -0.83 5.14 -104.53 -0.54 -1.37 16 20 C -0.09 -0.72 6.06 -27.88 -0.17 -0.88 16 21 C -0.15 -1.12 9.89 37.16 0.37 -0.75 16 22 C -0.13 -1.52 9.68 -39.64 -0.38 -1.91 16 23 C -0.12 -1.67 7.49 -39.18 -0.29 -1.97 16 24 H 0.10 1.29 7.84 -52.48 -0.41 0.87 16 25 H 0.10 1.06 8.06 -52.48 -0.42 0.64 16 26 H 0.11 1.50 7.58 -52.49 -0.40 1.11 16 27 H 0.08 1.46 7.78 -51.93 -0.40 1.05 16 28 H 0.10 1.53 4.07 -51.97 -0.21 1.32 16 29 H 0.03 0.93 8.07 -51.93 -0.42 0.51 16 30 H 0.05 1.38 7.35 -51.93 -0.38 1.00 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.13 2.15 7.92 -52.49 -0.42 1.73 16 33 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 34 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 35 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 40 H 0.16 2.09 2.82 -52.49 -0.15 1.94 16 LS Contribution 335.67 15.07 5.06 5.06 Total: -1.00 -33.24 335.67 -8.09 -41.33 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.71 Total: 1.16 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -2.81 Total: -11.09 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.30 Total: -39.35 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.09 Total: -14.13 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.24 -8.09 -41.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292574051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.337 kcal (2) G-P(sol) polarization free energy of solvation -33.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds