Wall clock time and date at job start Mon Mar 30 2020 01:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99995 * 2 1 4 4 N 1.46500 * 109.47281 * 124.99556 * 3 2 1 5 5 C 1.46505 * 120.00160 * 278.10284 * 4 3 2 6 6 C 1.50696 * 109.46675 * 269.99864 * 5 4 3 7 7 H 1.08002 * 120.00419 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99637 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00124 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00055 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46803 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46998 * 120.00024 * 10 8 6 13 13 H 1.48493 * 109.47230 * 240.00492 * 10 8 6 14 14 C 1.34775 * 119.99965 * 98.09895 * 4 3 2 15 15 O 1.21556 * 120.00230 * 186.12468 * 14 4 3 16 16 C 1.47846 * 119.99944 * 6.12422 * 14 4 3 17 17 C 1.39584 * 120.14379 * 150.44497 * 16 14 4 18 18 C 1.37950 * 119.85112 * 180.02562 * 17 16 14 19 19 C 1.38360 * 120.14869 * 0.02562 * 18 17 16 20 20 C 1.50701 * 119.85576 * 179.97438 * 19 18 17 21 21 C 1.53006 * 109.46622 * 90.00603 * 20 19 18 22 22 C 1.38359 * 120.29147 * 0.24281 * 19 18 17 23 23 C 1.37964 * 120.14480 * 359.47656 * 22 19 18 24 24 H 1.08003 * 119.99893 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.99952 * 179.97438 * 1 2 3 26 26 H 1.07993 * 120.00228 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.46954 * 4.99712 * 3 2 1 28 28 H 1.09001 * 109.47269 * 244.99938 * 3 2 1 29 29 H 1.08998 * 109.47082 * 29.99513 * 5 4 3 30 30 H 1.08997 * 109.47144 * 149.99976 * 5 4 3 31 31 H 0.97001 * 120.00101 * 179.97438 * 9 8 6 32 32 H 1.08001 * 120.07038 * 0.02562 * 17 16 14 33 33 H 1.08006 * 119.92779 * 180.02562 * 18 17 16 34 34 H 1.09001 * 109.47011 * 330.00752 * 20 19 18 35 35 H 1.08994 * 109.47298 * 210.00231 * 20 19 18 36 36 H 1.08994 * 109.46981 * 299.99822 * 21 20 19 37 37 H 1.09004 * 109.46703 * 180.02562 * 21 20 19 38 38 H 1.08991 * 109.47192 * 60.00215 * 21 20 19 39 39 H 1.07996 * 119.92642 * 179.74279 * 22 19 18 40 40 H 1.07995 * 120.07361 * 180.25605 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5130 1.6968 2.4665 6 6 2.6364 3.1868 2.6548 7 1 3.0335 3.8007 1.8599 8 6 2.2422 3.7665 3.8422 9 7 1.7591 3.0191 4.8104 10 14 2.3957 5.6135 4.0760 11 1 2.9645 6.2225 2.8468 12 1 1.0538 6.1923 4.3394 13 1 3.2905 5.8940 5.2275 14 6 4.2916 1.0210 0.9443 15 8 5.0396 0.9345 1.8985 16 6 4.8057 0.7851 -0.4217 17 6 6.1376 1.0688 -0.7281 18 6 6.6108 0.8469 -2.0048 19 6 5.7682 0.3448 -2.9806 20 6 6.2920 0.1055 -4.3733 21 6 6.8405 -1.3193 -4.4739 22 6 4.4455 0.0667 -2.6850 23 6 3.9611 0.2786 -1.4107 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9354 -0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6213 1.4026 -0.9314 29 1 1.4685 1.4028 2.5694 30 1 3.1107 1.1845 3.2204 31 1 1.4821 3.4269 5.6458 32 1 6.7962 1.4611 0.0327 33 1 7.6413 1.0656 -2.2431 34 1 7.0884 0.8176 -4.5893 35 1 5.4836 0.2352 -5.0928 36 1 7.6489 -1.4491 -3.7544 37 1 7.2197 -1.4923 -5.4811 38 1 6.0441 -2.0314 -4.2579 39 1 3.7920 -0.3211 -3.4523 40 1 2.9295 0.0573 -1.1802 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292574051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:44 Heat of formation + Delta-G solvation = 8.860175 kcal Electronic energy + Delta-G solvation = -20674.581010 eV Core-core repulsion = 17647.802926 eV Total energy + Delta-G solvation = -3026.778084 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.54808 -39.52384 -37.55190 -35.43361 -34.76858 -33.76240 -32.05147 -30.91446 -29.22985 -27.27183 -25.84872 -24.35862 -23.59591 -22.06815 -21.43127 -20.30857 -18.67511 -18.28947 -17.68688 -16.88106 -16.54001 -16.14212 -16.01100 -15.75449 -15.00277 -14.82907 -14.56976 -14.36989 -14.27338 -14.12769 -13.93140 -13.34967 -13.24261 -12.97838 -12.94344 -12.66679 -12.53403 -12.30526 -12.25359 -12.03259 -11.86097 -11.69499 -11.53498 -10.72985 -10.68315 -10.45392 -9.86791 -9.68424 -9.47614 -8.26034 -6.41624 -0.05001 0.40572 1.24779 1.34166 1.36687 1.48883 1.85656 2.29397 2.42279 2.84959 3.03346 3.57644 3.87090 3.89670 3.99343 4.04444 4.17748 4.32836 4.33340 4.46798 4.58143 4.59225 4.67613 4.81172 4.90626 5.00605 5.02761 5.04630 5.14850 5.17011 5.17683 5.36655 5.43803 5.46327 5.48258 5.64839 5.65429 5.71210 5.89681 5.98803 6.01488 6.62436 6.68781 7.20632 7.36123 8.81663 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.021599 B = 0.004728 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.062084 B = 5920.948961 C = 6628.755208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.197 4.197 3 C 0.103 3.897 4 N -0.588 5.588 5 C 0.263 3.737 6 C -0.548 4.548 7 H 0.052 0.948 8 C 0.009 3.991 9 N -0.926 5.926 10 Si 0.970 3.030 11 H -0.268 1.268 12 H -0.266 1.266 13 H -0.280 1.280 14 C 0.536 3.464 15 O -0.599 6.599 16 C -0.152 4.152 17 C -0.083 4.083 18 C -0.124 4.124 19 C -0.059 4.059 20 C -0.083 4.083 21 C -0.147 4.147 22 C -0.121 4.121 23 C -0.116 4.116 24 H 0.102 0.898 25 H 0.123 0.877 26 H 0.116 0.884 27 H 0.075 0.925 28 H 0.127 0.873 29 H 0.026 0.974 30 H -0.003 1.003 31 H 0.268 0.732 32 H 0.111 0.889 33 H 0.149 0.851 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.161 0.839 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.965 -6.960 -22.402 23.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.216 4.216 3 C -0.018 4.018 4 N -0.317 5.317 5 C 0.143 3.857 6 C -0.586 4.586 7 H 0.070 0.930 8 C -0.190 4.190 9 N -0.566 5.566 10 Si 0.794 3.206 11 H -0.192 1.192 12 H -0.191 1.191 13 H -0.206 1.206 14 C 0.327 3.673 15 O -0.481 6.481 16 C -0.155 4.155 17 C -0.102 4.102 18 C -0.142 4.142 19 C -0.059 4.059 20 C -0.121 4.121 21 C -0.204 4.204 22 C -0.138 4.138 23 C -0.133 4.133 24 H 0.120 0.880 25 H 0.141 0.859 26 H 0.134 0.866 27 H 0.093 0.907 28 H 0.144 0.856 29 H 0.044 0.956 30 H 0.015 0.985 31 H 0.077 0.923 32 H 0.129 0.871 33 H 0.167 0.833 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.179 0.821 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.240 -6.982 -21.714 23.038 hybrid contribution 0.087 0.923 1.357 1.643 sum 3.327 -6.059 -20.357 21.499 Atomic orbital electron populations 1.24117 0.95162 1.03285 0.96293 1.23189 0.96970 0.97860 1.03619 1.21687 0.92986 0.96634 0.90482 1.48076 1.07834 1.64883 1.10877 1.18746 0.93577 0.94477 0.78949 1.21713 1.42831 0.93265 1.00796 0.93004 1.25877 0.94319 1.03747 0.95042 1.70062 1.43167 1.37560 1.05767 0.85331 0.78367 0.78730 0.78161 1.19218 1.19066 1.20569 1.19094 0.82097 0.76604 0.89531 1.90678 1.57863 1.54834 1.44767 1.19940 0.96307 1.06603 0.92661 1.21248 0.93538 0.97638 0.97756 1.21206 1.01114 1.00413 0.91428 1.20509 0.93543 0.94961 0.96930 1.20664 1.01908 0.98460 0.91027 1.21752 1.00985 0.95210 1.02464 1.21376 0.95837 1.00374 0.96223 1.22487 1.00994 0.96869 0.92993 0.87995 0.85914 0.86643 0.90684 0.85599 0.95610 0.98481 0.92266 0.87087 0.83322 0.89811 0.89047 0.93277 0.90704 0.92661 0.82119 0.81600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 14.32 67.78 0.97 -2.68 16 2 C -0.20 -5.60 8.22 25.65 0.21 -5.39 16 3 C 0.10 3.55 5.33 85.63 0.46 4.01 16 4 N -0.59 -27.43 2.45 -833.92 -2.04 -29.48 16 5 C 0.26 15.05 5.21 85.63 0.45 15.49 16 6 C -0.55 -32.90 9.39 25.60 0.24 -32.66 16 7 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 8 C 0.01 0.55 5.46 84.66 0.46 1.02 16 9 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 10 Si 0.97 45.89 29.54 68.60 2.03 47.92 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 13 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 14 C 0.54 25.65 7.46 86.79 0.65 26.30 16 15 O -0.60 -34.51 16.26 -3.89 -0.06 -34.58 16 16 C -0.15 -5.51 5.59 -20.09 -0.11 -5.62 16 17 C -0.08 -2.71 9.60 22.53 0.22 -2.49 16 18 C -0.12 -2.91 9.68 22.23 0.22 -2.70 16 19 C -0.06 -1.14 5.14 -19.81 -0.10 -1.24 16 20 C -0.08 -1.00 6.06 29.85 0.18 -0.82 16 21 C -0.15 -1.65 9.89 71.98 0.71 -0.94 16 22 C -0.12 -2.41 9.68 22.23 0.22 -2.19 16 23 C -0.12 -3.14 7.49 22.53 0.17 -2.97 16 24 H 0.10 2.44 7.84 -2.91 -0.02 2.42 16 25 H 0.12 2.34 8.06 -2.91 -0.02 2.32 16 26 H 0.12 3.11 7.58 -2.91 -0.02 3.09 16 27 H 0.07 2.66 7.78 -2.39 -0.02 2.64 16 28 H 0.13 3.69 4.07 -2.43 -0.01 3.68 16 29 H 0.03 1.48 8.07 -2.39 -0.02 1.47 16 30 H 0.00 -0.19 7.35 -2.39 -0.02 -0.21 16 31 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 32 H 0.11 3.96 7.92 -2.91 -0.02 3.94 16 33 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 34 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 35 H 0.09 0.82 8.08 -2.39 -0.02 0.80 16 36 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 38 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 40 H 0.17 4.16 2.82 -2.91 -0.01 4.16 16 Total: -1.00 -77.78 335.67 6.15 -71.62 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 1.02 Total: 14.31 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: 4.93 Total: -12.89 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -1.76 Total: -86.39 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -0.06 Total: -34.58 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -77.78 6.15 -71.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292574051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.482 kcal (2) G-P(sol) polarization free energy of solvation -77.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds