Wall clock time and date at job start Mon Mar 30 2020 02:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31010 * 1 3 3 C 1.50701 * 119.99493 * 2 1 4 4 N 1.46907 * 109.46709 * 235.91288 * 3 2 1 5 5 C 1.46905 * 110.99977 * 301.10912 * 4 3 2 6 6 C 1.50700 * 109.46894 * 293.95674 * 5 4 3 7 7 H 1.07996 * 120.00187 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99870 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00201 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00020 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47073 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46807 * 120.00359 * 10 8 6 13 13 H 1.48503 * 109.47235 * 239.99896 * 10 8 6 14 14 C 1.46901 * 111.00121 * 65.06041 * 4 3 2 15 15 C 1.50699 * 109.46787 * 76.22258 * 14 4 3 16 16 C 1.38284 * 120.12155 * 263.16502 * 15 14 4 17 17 C 1.37929 * 120.35751 * 179.97438 * 16 15 14 18 18 C 1.39289 * 120.23632 * 0.55301 * 17 16 15 19 19 C 1.38885 * 118.87463 * 359.41190 * 18 17 16 20 20 C 1.37739 * 120.78757 * 0.41862 * 19 18 17 21 21 C 1.51645 * 107.03574 * 180.67976 * 19 18 17 22 22 C 1.54706 * 101.92195 * 15.47425 * 21 19 18 23 23 O 1.36134 * 129.88573 * 179.09418 * 18 17 16 24 24 H 1.07995 * 119.99483 * 180.02562 * 1 2 3 25 25 H 1.07993 * 120.00048 * 359.97438 * 1 2 3 26 26 H 1.07992 * 120.00260 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.47454 * 355.90921 * 3 2 1 28 28 H 1.08997 * 109.47218 * 115.91726 * 3 2 1 29 29 H 1.08996 * 109.47111 * 53.95295 * 5 4 3 30 30 H 1.08995 * 109.47069 * 173.95299 * 5 4 3 31 31 H 0.96993 * 120.00701 * 179.97438 * 9 8 6 32 32 H 1.08992 * 109.47201 * 196.22423 * 14 4 3 33 33 H 1.09000 * 109.47338 * 316.22813 * 14 4 3 34 34 H 1.08000 * 119.82303 * 0.18210 * 16 15 14 35 35 H 1.07994 * 119.88564 * 180.27966 * 17 16 15 36 36 H 1.08004 * 120.01088 * 179.77339 * 20 19 18 37 37 H 1.09004 * 110.93592 * 133.62846 * 21 19 18 38 38 H 1.08999 * 110.94356 * 257.27593 * 21 19 18 39 39 H 1.08997 * 110.75073 * 93.02020 * 22 21 19 40 40 H 1.09002 * 110.74998 * 216.18360 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9806 1.3411 -1.1471 5 6 3.9321 0.2230 -1.0957 6 6 4.8404 0.3909 0.0950 7 1 4.7229 1.2431 0.7480 8 6 5.8222 -0.5429 0.3503 9 7 5.9662 -1.5799 -0.4457 10 14 6.9486 -0.3345 1.8258 11 1 6.5830 0.9056 2.5564 12 1 6.8010 -1.5031 2.7301 13 1 8.3569 -0.2407 1.3641 14 6 2.2382 1.3427 -2.4148 15 6 1.6625 2.7140 -2.6580 16 6 0.3515 2.9873 -2.3135 17 6 -0.1802 4.2408 -2.5334 18 6 0.5964 5.2399 -3.1157 19 6 1.9120 4.9536 -3.4566 20 6 2.4419 3.7021 -3.2328 21 6 2.5037 6.2194 -4.0459 22 6 1.4779 7.2887 -3.6014 23 8 0.2726 6.5233 -3.4339 24 1 -0.5399 -0.9353 0.0004 25 1 -0.5400 0.9352 0.0004 26 1 1.8501 -0.9352 0.0004 27 1 1.3575 2.1323 -0.0733 28 1 2.6341 1.3953 0.9243 29 1 3.3853 -0.7155 -1.0060 30 1 4.5278 0.2107 -2.0083 31 1 6.6571 -2.2367 -0.2664 32 1 2.9120 1.0815 -3.2307 33 1 1.4299 0.6132 -2.3634 34 1 -0.2584 2.2161 -1.8667 35 1 -1.2036 4.4473 -2.2573 36 1 3.4655 3.4921 -3.5061 37 1 3.4873 6.4233 -3.6226 38 1 2.5551 6.1560 -5.1328 39 1 1.7797 7.7451 -2.6587 40 1 1.3524 8.0479 -4.3734 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292891428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:11 Heat of formation + Delta-G solvation = 19.599324 kcal Electronic energy + Delta-G solvation = -20672.119721 eV Core-core repulsion = 17645.807322 eV Total energy + Delta-G solvation = -3026.312400 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.97048 -38.28375 -36.52425 -32.93818 -32.60635 -32.32260 -30.41506 -29.14422 -27.05080 -26.09426 -23.99583 -23.10231 -21.79320 -21.34039 -20.44761 -18.77328 -17.29608 -16.60329 -16.33980 -16.09717 -15.17679 -15.02332 -14.49608 -14.20790 -13.91345 -13.81213 -13.30120 -13.14563 -12.96679 -12.86121 -12.39861 -12.15185 -11.79301 -11.52510 -11.31311 -11.26654 -10.85264 -10.83775 -10.65440 -10.60968 -10.50105 -10.42577 -9.85167 -9.29444 -8.86009 -8.67585 -8.45612 -7.87307 -7.22906 -6.04041 -4.04875 1.46402 1.57817 2.74877 3.29599 3.29973 3.37818 3.42602 3.86214 4.42784 4.43920 4.59286 4.89951 5.00457 5.08303 5.26951 5.31685 5.34221 5.37324 5.50537 5.56666 5.63814 5.71974 5.73565 5.82006 5.89700 6.04774 6.22735 6.28829 6.43032 6.46996 6.55083 6.64648 6.75723 6.90426 7.08845 7.12875 7.31948 7.35580 7.36975 7.79742 8.07154 8.17652 8.52851 9.02987 9.59397 11.06691 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.020689 B = 0.004532 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.052451 B = 6176.500331 C = 6977.055467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.157 4.157 3 C 0.086 3.914 4 N -0.523 5.523 5 C 0.188 3.812 6 C -0.504 4.504 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.089 3.911 15 C -0.082 4.082 16 C -0.083 4.083 17 C -0.139 4.139 18 C 0.089 3.911 19 C -0.176 4.176 20 C -0.048 4.048 21 C -0.109 4.109 22 C 0.052 3.948 23 O -0.311 6.311 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.114 0.886 27 H 0.060 0.940 28 H 0.089 0.911 29 H -0.001 1.001 30 H 0.029 0.971 31 H 0.260 0.740 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.240 12.127 -5.934 16.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.177 4.177 3 C -0.042 4.042 4 N -0.245 5.245 5 C 0.064 3.936 6 C -0.543 4.543 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.039 4.039 15 C -0.082 4.082 16 C -0.102 4.102 17 C -0.158 4.158 18 C 0.045 3.955 19 C -0.177 4.177 20 C -0.066 4.066 21 C -0.146 4.146 22 C -0.023 4.023 23 O -0.225 6.225 24 H 0.105 0.895 25 H 0.107 0.893 26 H 0.132 0.868 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.017 0.983 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.031 12.522 -5.968 17.118 hybrid contribution 0.425 -0.807 0.743 1.176 sum -9.606 11.714 -5.225 16.025 Atomic orbital electron populations 1.23685 0.95972 1.00725 1.05146 1.23951 0.96153 1.01707 0.95883 1.21295 0.94089 0.92417 0.96411 1.62401 1.15215 1.47846 0.99083 1.19829 0.89545 0.86283 0.97967 1.21182 1.14874 1.07979 1.10225 0.91872 1.24962 0.97538 0.95225 0.96793 1.69958 1.33855 1.12266 1.37797 0.86484 0.80570 0.78012 0.82625 1.19670 1.21157 1.21057 1.21000 0.97059 0.91282 0.94561 1.19852 0.93159 0.96525 0.98707 1.20825 0.95239 0.95442 0.98688 1.20139 1.00192 0.92053 1.03379 1.19496 0.93919 0.85325 0.96784 1.20698 0.95465 0.96339 1.05219 1.20207 0.99527 0.90337 0.96561 1.21757 0.99874 0.91454 1.01541 1.23770 0.82627 0.94147 1.01740 1.86775 1.31680 1.18702 1.85373 0.89452 0.89301 0.86778 0.92149 0.89311 0.98319 0.95321 0.93012 0.90654 0.94135 0.85504 0.85984 0.85597 0.89103 0.89487 0.90763 0.88009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.24 14.29 29.01 0.41 -2.82 16 2 C -0.16 -2.81 7.53 -36.03 -0.27 -3.09 16 3 C 0.09 1.63 5.48 -4.97 -0.03 1.61 16 4 N -0.52 -10.85 4.62 -238.96 -1.10 -11.96 16 5 C 0.19 4.70 4.50 -4.97 -0.02 4.68 16 6 C -0.50 -13.75 8.53 -34.44 -0.29 -14.05 16 7 H 0.06 1.73 7.10 -52.49 -0.37 1.35 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.19 13.29 55.43 0.74 -25.45 16 10 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.09 1.58 5.03 -4.98 -0.03 1.55 16 15 C -0.08 -1.30 5.01 -104.56 -0.52 -1.82 16 16 C -0.08 -1.20 8.57 -39.68 -0.34 -1.54 16 17 C -0.14 -1.93 10.06 -39.30 -0.40 -2.32 16 18 C 0.09 1.29 7.04 -38.95 -0.27 1.02 16 19 C -0.18 -2.48 6.27 -104.10 -0.65 -3.13 16 20 C -0.05 -0.73 9.72 -39.72 -0.39 -1.12 16 21 C -0.11 -1.15 7.12 -26.52 -0.19 -1.34 16 22 C 0.05 0.51 8.01 38.06 0.30 0.81 16 23 O -0.31 -4.18 11.10 -20.17 -0.22 -4.41 16 24 H 0.09 1.19 8.06 -52.49 -0.42 0.77 16 25 H 0.09 1.19 7.39 -52.49 -0.39 0.80 16 26 H 0.11 2.31 6.66 -52.49 -0.35 1.97 16 27 H 0.06 1.05 6.31 -51.93 -0.33 0.72 16 28 H 0.09 1.85 6.89 -51.93 -0.36 1.49 16 29 H 0.00 -0.02 6.10 -51.93 -0.32 -0.34 16 30 H 0.03 0.77 7.82 -51.93 -0.41 0.37 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.08 1.34 7.71 -51.93 -0.40 0.94 16 33 H 0.04 0.70 6.72 -51.93 -0.35 0.35 16 34 H 0.13 1.66 7.61 -52.49 -0.40 1.26 16 35 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.13 1.89 8.06 -52.48 -0.42 1.47 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 327.85 15.07 4.94 4.94 Total: -1.00 -29.77 327.85 -9.21 -38.98 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -5.76 Total: 1.61 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -2.78 Total: -20.09 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: -0.37 Total: -37.41 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.22 Total: -4.41 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.77 -9.21 -38.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292891428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.583 kcal (2) G-P(sol) polarization free energy of solvation -29.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds