Wall clock time and date at job start Mon Mar 30 2020 02:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31010 * 1 3 3 C 1.50701 * 119.99493 * 2 1 4 4 N 1.46907 * 109.46709 * 235.91288 * 3 2 1 5 5 C 1.46905 * 110.99977 * 301.10912 * 4 3 2 6 6 C 1.50700 * 109.46894 * 293.95674 * 5 4 3 7 7 H 1.07996 * 120.00187 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99870 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00201 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00020 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47073 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46807 * 120.00359 * 10 8 6 13 13 H 1.48503 * 109.47235 * 239.99896 * 10 8 6 14 14 C 1.46901 * 111.00121 * 65.06041 * 4 3 2 15 15 C 1.50699 * 109.46787 * 76.22258 * 14 4 3 16 16 C 1.38284 * 120.12155 * 263.16502 * 15 14 4 17 17 C 1.37929 * 120.35751 * 179.97438 * 16 15 14 18 18 C 1.39289 * 120.23632 * 0.55301 * 17 16 15 19 19 C 1.38885 * 118.87463 * 359.41190 * 18 17 16 20 20 C 1.37739 * 120.78757 * 0.41862 * 19 18 17 21 21 C 1.51645 * 107.03574 * 180.67976 * 19 18 17 22 22 C 1.54706 * 101.92195 * 15.47425 * 21 19 18 23 23 O 1.36134 * 129.88573 * 179.09418 * 18 17 16 24 24 H 1.07995 * 119.99483 * 180.02562 * 1 2 3 25 25 H 1.07993 * 120.00048 * 359.97438 * 1 2 3 26 26 H 1.07992 * 120.00260 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.47454 * 355.90921 * 3 2 1 28 28 H 1.08997 * 109.47218 * 115.91726 * 3 2 1 29 29 H 1.08996 * 109.47111 * 53.95295 * 5 4 3 30 30 H 1.08995 * 109.47069 * 173.95299 * 5 4 3 31 31 H 0.96993 * 120.00701 * 179.97438 * 9 8 6 32 32 H 1.08992 * 109.47201 * 196.22423 * 14 4 3 33 33 H 1.09000 * 109.47338 * 316.22813 * 14 4 3 34 34 H 1.08000 * 119.82303 * 0.18210 * 16 15 14 35 35 H 1.07994 * 119.88564 * 180.27966 * 17 16 15 36 36 H 1.08004 * 120.01088 * 179.77339 * 20 19 18 37 37 H 1.09004 * 110.93592 * 133.62846 * 21 19 18 38 38 H 1.08999 * 110.94356 * 257.27593 * 21 19 18 39 39 H 1.08997 * 110.75073 * 93.02020 * 22 21 19 40 40 H 1.09002 * 110.74998 * 216.18360 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9806 1.3411 -1.1471 5 6 3.9321 0.2230 -1.0957 6 6 4.8404 0.3909 0.0950 7 1 4.7229 1.2431 0.7480 8 6 5.8222 -0.5429 0.3503 9 7 5.9662 -1.5799 -0.4457 10 14 6.9486 -0.3345 1.8258 11 1 6.5830 0.9056 2.5564 12 1 6.8010 -1.5031 2.7301 13 1 8.3569 -0.2407 1.3641 14 6 2.2382 1.3427 -2.4148 15 6 1.6625 2.7140 -2.6580 16 6 0.3515 2.9873 -2.3135 17 6 -0.1802 4.2408 -2.5334 18 6 0.5964 5.2399 -3.1157 19 6 1.9120 4.9536 -3.4566 20 6 2.4419 3.7021 -3.2328 21 6 2.5037 6.2194 -4.0459 22 6 1.4779 7.2887 -3.6014 23 8 0.2726 6.5233 -3.4339 24 1 -0.5399 -0.9353 0.0004 25 1 -0.5400 0.9352 0.0004 26 1 1.8501 -0.9352 0.0004 27 1 1.3575 2.1323 -0.0733 28 1 2.6341 1.3953 0.9243 29 1 3.3853 -0.7155 -1.0060 30 1 4.5278 0.2107 -2.0083 31 1 6.6571 -2.2367 -0.2664 32 1 2.9120 1.0815 -3.2307 33 1 1.4299 0.6132 -2.3634 34 1 -0.2584 2.2161 -1.8667 35 1 -1.2036 4.4473 -2.2573 36 1 3.4655 3.4921 -3.5061 37 1 3.4873 6.4233 -3.6226 38 1 2.5551 6.1560 -5.1328 39 1 1.7797 7.7451 -2.6587 40 1 1.3524 8.0479 -4.3734 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292891428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:10 Heat of formation + Delta-G solvation = 2.229681 kcal Electronic energy + Delta-G solvation = -20672.872926 eV Core-core repulsion = 17645.807322 eV Total energy + Delta-G solvation = -3027.065604 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.97095 -39.63906 -37.84985 -34.87944 -33.83223 -33.56829 -31.80298 -30.12297 -28.90571 -27.49270 -25.60709 -24.18605 -23.04365 -22.71300 -21.67847 -20.27234 -18.42626 -18.25097 -17.60426 -17.04895 -16.81198 -16.66414 -15.96231 -15.66332 -15.38515 -14.98505 -14.59809 -14.40685 -14.07613 -13.96006 -13.86283 -13.42215 -13.17696 -12.89744 -12.82141 -12.62462 -12.58487 -12.48377 -12.20464 -12.12145 -11.76277 -11.61229 -11.59586 -11.25381 -10.60817 -10.24023 -9.77294 -9.03116 -8.86944 -8.17985 -6.26795 0.36022 0.44532 1.40085 1.41198 1.42173 1.54254 2.35668 2.41616 2.74502 3.14845 3.53036 3.56407 3.71855 3.99025 4.06616 4.12639 4.19361 4.27730 4.29816 4.46806 4.48305 4.63939 4.68436 4.73065 4.77324 4.90198 4.94634 4.98588 5.10362 5.20469 5.27214 5.30479 5.39303 5.46231 5.65394 5.67405 5.74879 5.77342 5.85806 6.10768 6.27689 6.38139 6.67546 6.89451 7.42344 8.92723 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.020689 B = 0.004532 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.052451 B = 6176.500331 C = 6977.055467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.192 4.192 3 C 0.094 3.906 4 N -0.531 5.531 5 C 0.206 3.794 6 C -0.516 4.516 7 H 0.059 0.941 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.265 1.265 12 H -0.280 1.280 13 H -0.279 1.279 14 C 0.096 3.904 15 C -0.097 4.097 16 C -0.082 4.082 17 C -0.140 4.140 18 C 0.082 3.918 19 C -0.184 4.184 20 C -0.064 4.064 21 C -0.109 4.109 22 C 0.049 3.951 23 O -0.323 6.323 24 H 0.105 0.895 25 H 0.115 0.885 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.063 0.937 29 H -0.022 1.022 30 H -0.001 1.001 31 H 0.263 0.737 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.748 14.079 -5.513 19.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.212 4.212 3 C -0.034 4.034 4 N -0.253 5.253 5 C 0.080 3.920 6 C -0.554 4.554 7 H 0.077 0.923 8 C -0.193 4.193 9 N -0.575 5.575 10 Si 0.788 3.212 11 H -0.189 1.189 12 H -0.205 1.205 13 H -0.205 1.205 14 C -0.031 4.031 15 C -0.098 4.098 16 C -0.100 4.100 17 C -0.159 4.159 18 C 0.036 3.964 19 C -0.185 4.185 20 C -0.082 4.082 21 C -0.146 4.146 22 C -0.025 4.025 23 O -0.237 6.237 24 H 0.123 0.877 25 H 0.133 0.867 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.081 0.919 29 H -0.004 1.004 30 H 0.017 0.983 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.160 0.840 35 H 0.162 0.838 36 H 0.136 0.864 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.102 0.898 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.554 14.494 -5.550 19.349 hybrid contribution 0.786 -1.345 0.550 1.652 sum -10.767 13.150 -5.000 17.716 Atomic orbital electron populations 1.23956 0.94584 1.02765 0.99884 1.23567 0.97201 0.99636 1.00771 1.21185 0.93823 0.93932 0.94452 1.62289 1.16235 1.45603 1.01199 1.19432 0.89797 0.86988 0.95787 1.21461 1.15399 1.07796 1.10785 0.92291 1.25813 0.99072 0.94838 0.99623 1.70079 1.34689 1.13125 1.39604 0.85425 0.78428 0.78219 0.79106 1.18927 1.20531 1.20498 1.20913 0.96576 0.93074 0.92577 1.19687 0.94203 0.95449 1.00467 1.20923 0.94504 0.96157 0.98437 1.20400 1.01178 0.91579 1.02736 1.19759 0.94041 0.86041 0.96511 1.21024 0.95933 0.96801 1.04757 1.20240 0.99378 0.91215 0.97393 1.21880 1.00490 0.89886 1.02310 1.24080 0.81023 0.94024 1.03385 1.86762 1.33505 1.18310 1.85158 0.87673 0.86684 0.90155 0.89887 0.91900 1.00406 0.98274 0.92818 0.91938 0.93627 0.84034 0.83779 0.86383 0.88092 0.88110 0.89818 0.84856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.75 14.29 67.77 0.97 -3.78 16 2 C -0.19 -6.89 7.53 25.64 0.19 -6.70 16 3 C 0.09 3.60 5.48 85.56 0.47 4.07 16 4 N -0.53 -22.82 4.62 -909.95 -4.20 -27.03 16 5 C 0.21 10.86 4.50 85.56 0.38 11.25 16 6 C -0.52 -29.18 8.53 25.60 0.22 -28.96 16 7 H 0.06 3.31 7.10 -2.91 -0.02 3.29 16 8 C 0.00 0.25 5.46 84.66 0.46 0.71 16 9 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 10 Si 0.96 44.54 29.54 68.60 2.03 46.56 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 14 C 0.10 3.50 5.03 85.56 0.43 3.93 16 15 C -0.10 -3.06 5.01 -19.83 -0.10 -3.16 16 16 C -0.08 -2.20 8.57 22.21 0.19 -2.01 16 17 C -0.14 -3.56 10.06 22.45 0.23 -3.33 16 18 C 0.08 2.19 7.04 22.68 0.16 2.35 16 19 C -0.18 -4.95 6.27 -19.53 -0.12 -5.08 16 20 C -0.06 -1.95 9.72 22.18 0.22 -1.74 16 21 C -0.11 -2.05 7.12 30.73 0.22 -1.83 16 22 C 0.05 0.81 8.01 72.56 0.58 1.39 16 23 O -0.32 -7.84 11.10 -95.08 -1.06 -8.90 16 24 H 0.11 2.54 8.06 -2.91 -0.02 2.51 16 25 H 0.12 2.58 7.39 -2.91 -0.02 2.56 16 26 H 0.08 3.44 6.66 -2.91 -0.02 3.42 16 27 H 0.08 2.77 6.31 -2.39 -0.02 2.76 16 28 H 0.06 2.70 6.89 -2.39 -0.02 2.68 16 29 H -0.02 -1.22 6.10 -2.39 -0.01 -1.23 16 30 H 0.00 -0.05 7.82 -2.39 -0.02 -0.07 16 31 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 32 H 0.06 2.37 7.71 -2.39 -0.02 2.36 16 33 H 0.05 1.59 6.72 -2.39 -0.02 1.58 16 34 H 0.14 3.29 7.61 -2.91 -0.02 3.27 16 35 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 36 H 0.12 3.69 8.06 -2.91 -0.02 3.67 16 37 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -65.97 327.85 2.57 -63.40 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 1.02 Total: 14.67 kcal Atomic # 6 Polarization: -37.39 SS G_CDS: 4.50 Total: -32.89 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -3.92 Total: -82.84 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -1.06 Total: -8.90 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -65.97 2.57 -63.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292891428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.633 kcal (2) G-P(sol) polarization free energy of solvation -65.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds