Wall clock time and date at job start Mon Mar 30 2020 02:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46901 * 109.47281 * 50.71417 * 3 2 1 5 5 C 1.46896 * 111.00264 * 64.17133 * 4 3 2 6 6 C 1.52998 * 109.47405 * 200.44314 * 5 4 3 7 7 O 1.42901 * 109.46703 * 64.18359 * 6 5 4 8 8 C 1.42901 * 114.00021 * 175.08806 * 7 6 5 9 9 C 1.50700 * 109.47218 * 184.90432 * 8 7 6 10 10 H 1.07998 * 120.00085 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99674 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00348 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 119.99828 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46737 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47070 * 120.00238 * 13 11 9 16 16 H 1.48497 * 109.46969 * 240.00462 * 13 11 9 17 17 C 1.46903 * 111.00193 * 188.12852 * 4 3 2 18 18 C 1.50698 * 109.47020 * 66.04301 * 17 4 3 19 19 C 1.38237 * 119.99907 * 89.99826 * 18 17 4 20 20 C 1.38238 * 119.99934 * 179.97438 * 19 18 17 21 21 C 1.38228 * 120.00135 * 359.96144 * 20 19 18 22 22 C 1.38232 * 120.00078 * 0.27144 * 21 20 19 23 23 C 1.38233 * 120.00488 * 269.98240 * 18 17 4 24 24 H 4.40883 * 5.52223 * 180.02562 * 4 1 2 25 25 H 1.09001 * 109.47661 * 290.71402 * 3 2 1 26 26 H 1.09005 * 109.47000 * 170.70920 * 3 2 1 27 27 H 1.08997 * 109.47164 * 320.44887 * 5 4 3 28 28 H 1.09004 * 109.47001 * 80.44326 * 5 4 3 29 29 H 1.09003 * 109.47129 * 184.17774 * 6 5 4 30 30 H 1.08997 * 109.47270 * 304.18232 * 6 5 4 31 31 H 1.09001 * 109.47045 * 304.90995 * 8 7 6 32 32 H 1.09003 * 109.46678 * 64.90417 * 8 7 6 33 33 H 0.97008 * 120.00081 * 179.97438 * 12 11 9 34 34 H 1.08990 * 109.46977 * 306.04790 * 17 4 3 35 35 H 1.09000 * 109.47360 * 186.04123 * 17 4 3 36 36 H 1.07999 * 120.00263 * 359.97438 * 19 18 17 37 37 H 1.08001 * 119.99951 * 179.97438 * 20 19 18 38 38 H 1.08004 * 120.00121 * 180.02562 * 21 20 19 39 39 H 1.07999 * 120.00315 * 179.72693 * 22 21 20 40 40 H 1.08001 * 119.99589 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1360 -0.8761 -1.0720 5 6 2.7480 -0.3613 -2.3919 6 6 2.8059 -1.4942 -3.4185 7 8 1.8377 -2.4904 -3.0835 8 6 1.7316 -3.5438 -4.0432 9 6 0.6060 -4.4670 -3.6535 10 1 0.0290 -4.2688 -2.7623 11 6 0.3120 -5.5639 -4.4354 12 7 1.0143 -5.8050 -5.5208 13 14 -1.0838 -6.7078 -3.9527 14 1 -1.7133 -6.2192 -2.6996 15 1 -2.0979 -6.7363 -5.0372 16 1 -0.5500 -8.0768 -3.7380 17 6 4.5916 -1.0532 -0.9831 18 6 4.9300 -1.8054 0.2782 19 6 4.9953 -3.1861 0.2630 20 6 5.3062 -3.8761 1.4199 21 6 5.5526 -3.1853 2.5916 22 6 5.4825 -1.8049 2.6079 23 6 5.1754 -1.1147 1.4502 24 1 -1.0499 0.0000 -0.0003 25 1 3.0095 -0.3627 0.9612 26 1 3.0088 1.0151 -0.1659 27 1 1.7334 0.0340 -2.3438 28 1 3.4335 0.4328 -2.6881 29 1 2.5903 -1.0971 -4.4104 30 1 3.8012 -1.9386 -3.4134 31 1 1.5300 -3.1201 -5.0270 32 1 2.6666 -4.1034 -4.0733 33 1 0.8077 -6.5770 -6.0707 34 1 5.0760 -0.0770 -0.9649 35 1 4.9425 -1.6170 -1.8475 36 1 4.8035 -3.7259 -0.6525 37 1 5.3569 -4.9549 1.4082 38 1 5.7959 -3.7244 3.4953 39 1 5.6707 -1.2654 3.5243 40 1 5.1250 -0.0360 1.4618 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293539369.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:30 Heat of formation + Delta-G solvation = 40.001292 kcal Electronic energy + Delta-G solvation = -20351.954321 eV Core-core repulsion = 17326.526617 eV Total energy + Delta-G solvation = -3025.427704 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.53660 -37.73487 -36.09961 -33.02123 -32.67955 -31.53817 -30.85401 -29.25391 -27.13678 -26.67518 -24.06901 -22.49676 -22.22721 -21.53643 -20.52709 -18.00192 -16.81435 -16.37000 -15.89981 -15.68876 -15.26864 -15.13213 -14.74906 -14.37542 -14.20345 -13.88344 -13.35311 -13.04123 -12.99849 -12.69683 -12.44452 -12.22742 -11.99423 -11.66326 -11.23243 -10.93328 -10.89984 -10.77235 -10.69363 -10.39905 -10.17015 -9.99302 -9.87493 -9.00970 -8.83798 -8.76249 -8.68474 -8.13782 -8.03792 -6.04786 -4.05087 1.36697 1.47682 2.95209 3.10868 3.32903 3.39221 3.46708 3.78803 4.35561 4.41484 4.58465 4.80881 4.86034 4.93386 5.04083 5.13086 5.28771 5.31878 5.34088 5.46818 5.53930 5.59291 5.67550 5.74822 5.79941 5.99883 6.05491 6.10877 6.15937 6.20221 6.33301 6.47981 6.58755 6.71087 7.05062 7.14974 7.15758 7.22181 7.51284 7.88073 7.90516 8.24660 8.70754 9.10874 9.59736 11.06974 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.014793 B = 0.004712 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.364823 B = 5940.585069 C = 6651.230728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.180 4.180 3 C 0.161 3.839 4 N -0.514 5.514 5 C 0.058 3.942 6 C 0.070 3.930 7 O -0.376 6.376 8 C 0.194 3.806 9 C -0.507 4.507 10 H 0.066 0.934 11 C 0.055 3.945 12 N -0.901 5.901 13 Si 0.905 3.095 14 H -0.270 1.270 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.092 3.908 18 C -0.075 4.075 19 C -0.089 4.089 20 C -0.119 4.119 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.120 4.120 24 H 0.215 0.785 25 H 0.098 0.902 26 H 0.049 0.951 27 H 0.083 0.917 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.034 0.966 31 H 0.001 0.999 32 H 0.002 0.998 33 H 0.262 0.738 34 H 0.041 0.959 35 H 0.090 0.910 36 H 0.128 0.872 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.391 11.687 13.036 19.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.180 4.180 3 C 0.035 3.965 4 N -0.238 5.238 5 C -0.069 4.069 6 C -0.009 4.009 7 O -0.296 6.296 8 C 0.119 3.881 9 C -0.545 4.545 10 H 0.085 0.915 11 C -0.145 4.145 12 N -0.541 5.541 13 Si 0.732 3.268 14 H -0.195 1.195 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.034 4.034 18 C -0.075 4.075 19 C -0.107 4.107 20 C -0.137 4.137 21 C -0.142 4.142 22 C -0.144 4.144 23 C -0.139 4.139 24 H 0.232 0.768 25 H 0.116 0.884 26 H 0.067 0.933 27 H 0.101 0.899 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.019 0.981 32 H 0.020 0.980 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.108 0.892 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.087 11.113 13.093 19.430 hybrid contribution -0.386 -0.025 -0.280 0.477 sum 8.702 11.088 12.813 19.049 Atomic orbital electron populations 1.24827 0.95858 1.00513 0.99910 1.22671 0.94090 1.00408 1.00842 1.19078 0.85504 0.94972 0.96961 1.61837 1.11076 1.48556 1.02368 1.22231 1.01220 0.95300 0.88157 1.22209 0.93169 0.90300 0.95173 1.87981 1.57419 1.35351 1.48828 1.20172 0.96493 0.84313 0.87099 1.21108 1.15302 1.08148 1.09991 0.91550 1.24932 0.97094 0.97638 0.94866 1.69976 1.40379 1.28769 1.14938 0.86328 0.81625 0.80258 0.78588 1.19478 1.20928 1.20887 1.21122 0.87755 0.98269 0.96299 1.19744 0.98928 0.94140 0.94715 1.21177 0.96999 0.93674 0.98882 1.21201 0.99585 1.00047 0.92916 1.21120 1.00669 0.94412 0.98001 1.21039 1.01018 0.94471 0.97876 1.21019 1.00746 0.99434 0.92676 0.76799 0.88397 0.93283 0.89880 0.93910 0.94291 0.94794 0.98113 0.97981 0.92852 0.94088 0.89164 0.85392 0.86045 0.86450 0.86437 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.86 19.25 29.55 0.57 -2.29 16 2 C -0.18 -2.81 12.13 -37.13 -0.45 -3.26 16 3 C 0.16 2.19 5.21 -6.61 -0.03 2.15 16 4 N -0.51 -7.93 4.35 -239.59 -1.04 -8.97 16 5 C 0.06 0.91 5.25 -3.83 -0.02 0.89 16 6 C 0.07 1.33 6.13 37.16 0.23 1.55 16 7 O -0.38 -9.42 10.26 -35.23 -0.36 -9.78 16 8 C 0.19 5.45 5.70 36.01 0.21 5.66 16 9 C -0.51 -15.35 9.43 -34.44 -0.32 -15.67 16 10 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.41 13.29 55.43 0.74 -26.68 16 13 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16 14 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 C 0.09 1.19 4.94 -4.98 -0.02 1.17 16 18 C -0.07 -0.97 4.90 -104.63 -0.51 -1.49 16 19 C -0.09 -1.25 9.70 -39.58 -0.38 -1.63 16 20 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 21 C -0.12 -1.37 10.05 -39.59 -0.40 -1.76 16 22 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 23 C -0.12 -1.34 7.87 -39.58 -0.31 -1.65 16 24 H 0.22 2.48 7.80 -54.10 -0.42 2.06 16 25 H 0.10 1.27 5.60 -51.93 -0.29 0.97 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 1.39 6.75 -51.93 -0.35 1.04 16 28 H 0.04 0.54 7.99 -51.93 -0.41 0.12 16 29 H 0.04 0.71 8.12 -51.93 -0.42 0.29 16 30 H 0.03 0.61 6.72 -51.93 -0.35 0.27 16 31 H 0.00 0.03 8.12 -51.93 -0.42 -0.39 16 32 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.04 0.44 8.06 -51.93 -0.42 0.02 16 35 H 0.09 1.21 6.57 -51.93 -0.34 0.87 16 36 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 37 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 39 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 40 H 0.12 1.06 7.91 -52.49 -0.42 0.64 16 LS Contribution 343.13 15.07 5.17 5.17 Total: -1.00 -33.70 343.13 -8.80 -42.49 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.93 Total: -1.15 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -2.35 Total: -18.42 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: -0.31 Total: -35.65 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -0.36 Total: -9.78 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.70 -8.80 -42.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293539369.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.494 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds