Wall clock time and date at job start Mon Mar 30 2020 01:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50705 * 119.99761 * 2 1 4 4 N 1.46501 * 109.46885 * 124.99686 * 3 2 1 5 5 C 1.46499 * 119.99908 * 264.72163 * 4 3 2 6 6 C 1.50697 * 109.47004 * 269.99808 * 5 4 3 7 7 H 1.08002 * 120.00810 * 0.02562 * 6 5 4 8 8 C 1.37885 * 120.00071 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99762 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00026 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47540 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.47155 * 120.00463 * 10 8 6 13 13 H 1.48506 * 109.47113 * 240.00208 * 10 8 6 14 14 C 1.34772 * 119.99727 * 84.72419 * 4 3 2 15 15 O 1.21554 * 119.99869 * 185.34338 * 14 4 3 16 16 C 1.47849 * 120.00449 * 5.34469 * 14 4 3 17 17 C 1.39592 * 120.14078 * 53.59316 * 16 14 4 18 18 C 1.37937 * 119.85347 * 179.97438 * 17 16 14 19 19 C 1.38387 * 120.14227 * 0.02562 * 18 17 16 20 20 C 1.38339 * 120.29233 * 359.97438 * 19 18 17 21 21 C 1.37980 * 120.14437 * 0.29804 * 20 19 18 22 22 C 1.50697 * 120.07234 * 179.70317 * 21 20 19 23 23 C 1.53000 * 109.47195 * 265.32676 * 22 21 20 24 24 H 1.08000 * 119.99842 * 0.02562 * 1 2 3 25 25 H 1.07994 * 119.99720 * 179.97438 * 1 2 3 26 26 H 1.07994 * 120.00235 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.46896 * 5.00148 * 3 2 1 28 28 H 1.08995 * 109.47206 * 245.00114 * 3 2 1 29 29 H 1.08995 * 109.47669 * 30.00154 * 5 4 3 30 30 H 1.08998 * 109.46800 * 150.00638 * 5 4 3 31 31 H 0.96998 * 120.00124 * 179.97438 * 9 8 6 32 32 H 1.07997 * 120.08049 * 359.96129 * 17 16 14 33 33 H 1.07995 * 119.93496 * 180.02562 * 18 17 16 34 34 H 1.08002 * 119.85375 * 180.02562 * 19 18 17 35 35 H 1.07993 * 119.92810 * 180.02562 * 20 19 18 36 36 H 1.09000 * 109.47406 * 25.32997 * 22 21 20 37 37 H 1.09005 * 109.47424 * 145.32907 * 22 21 20 38 38 H 1.08996 * 109.46807 * 59.99956 * 23 22 21 39 39 H 1.08997 * 109.47257 * 180.02562 * 23 22 21 40 40 H 1.09001 * 109.47057 * 299.99918 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5982 1.9693 2.3899 6 6 2.9880 3.4246 2.3602 7 1 3.4807 3.8342 1.4907 8 6 2.7148 4.2338 3.4426 9 7 2.1143 3.7354 4.5013 10 14 3.1974 6.0380 3.4055 11 1 3.8539 6.3483 2.1102 12 1 1.9826 6.8786 3.5581 13 1 4.1386 6.3216 4.5185 14 6 4.2133 0.7704 1.0146 15 8 4.9479 0.7061 1.9809 16 6 4.6577 0.2326 -0.2889 17 6 4.6209 1.0377 -1.4287 18 6 5.0375 0.5300 -2.6417 19 6 5.4907 -0.7745 -2.7302 20 6 5.5297 -1.5777 -1.6045 21 6 5.1106 -1.0838 -0.3862 22 6 5.1475 -1.9622 0.8377 23 6 3.7791 -2.6171 1.0370 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5399 -0.9353 -0.0004 26 1 1.8501 -0.9352 0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6213 1.4027 -0.9313 29 1 1.5189 1.8847 2.5166 30 1 3.1014 1.4753 3.2211 31 1 1.9224 4.3045 5.2629 32 1 4.2669 2.0557 -1.3610 33 1 5.0100 1.1518 -3.5242 34 1 5.8162 -1.1671 -3.6823 35 1 5.8849 -2.5947 -1.6803 36 1 5.9048 -2.7353 0.7075 37 1 5.3918 -1.3580 1.7115 38 1 3.5349 -3.2213 0.1634 39 1 3.8057 -3.2520 1.9225 40 1 3.0219 -1.8439 1.1674 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293764584.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:47 Heat of formation + Delta-G solvation = 6.342582 kcal Electronic energy + Delta-G solvation = -21392.937917 eV Core-core repulsion = 18366.050662 eV Total energy + Delta-G solvation = -3026.887255 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.11342 -37.93634 -35.71497 -33.97248 -33.18441 -32.11076 -31.01419 -29.33166 -27.51116 -25.59656 -24.19035 -23.35195 -22.30265 -20.86194 -19.95372 -18.65493 -16.81244 -16.52703 -15.99273 -15.57478 -15.43142 -14.81903 -14.39758 -14.11290 -13.68638 -13.67645 -13.39536 -13.07116 -12.78995 -12.69134 -12.24548 -12.06575 -11.66509 -11.65232 -11.33720 -11.27162 -11.03523 -10.89774 -10.74290 -10.65476 -10.57224 -10.20067 -9.62047 -9.19259 -8.99084 -8.68656 -8.56962 -8.43590 -7.67584 -6.05337 -4.10420 1.23359 1.44983 2.48052 3.29027 3.33595 3.37341 3.41679 3.86600 4.05049 4.44057 4.85067 4.89865 5.01276 5.07866 5.23458 5.28267 5.29864 5.41724 5.51101 5.54694 5.60448 5.68014 5.73344 5.96237 6.02629 6.03988 6.10652 6.18234 6.27241 6.43265 6.47693 6.51988 6.72800 6.84346 6.93818 7.00899 7.11029 7.44792 7.54028 7.91243 8.21713 8.37833 8.87321 9.04759 9.54771 11.02691 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.018709 B = 0.005784 C = 0.005533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.212455 B = 4839.487482 C = 5059.515284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.166 4.166 3 C 0.126 3.874 4 N -0.585 5.585 5 C 0.246 3.754 6 C -0.528 4.528 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.897 3.103 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.553 3.447 15 O -0.533 6.533 16 C -0.109 4.109 17 C -0.089 4.089 18 C -0.131 4.131 19 C -0.109 4.109 20 C -0.126 4.126 21 C -0.039 4.039 22 C -0.104 4.104 23 C -0.146 4.146 24 H 0.098 0.902 25 H 0.093 0.907 26 H 0.106 0.894 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.033 0.967 30 H 0.045 0.955 31 H 0.263 0.737 32 H 0.130 0.870 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.161 -10.534 -14.234 17.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.185 4.185 3 C 0.003 3.997 4 N -0.315 5.315 5 C 0.127 3.873 6 C -0.567 4.567 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.339 3.661 15 O -0.411 6.411 16 C -0.113 4.113 17 C -0.108 4.108 18 C -0.149 4.149 19 C -0.127 4.127 20 C -0.144 4.144 21 C -0.039 4.039 22 C -0.141 4.141 23 C -0.203 4.203 24 H 0.117 0.883 25 H 0.112 0.888 26 H 0.124 0.876 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.148 0.852 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.460 -10.483 -13.495 17.150 hybrid contribution 0.153 1.062 -0.050 1.074 sum 1.613 -9.421 -13.545 16.578 Atomic orbital electron populations 1.23790 0.95776 1.01665 1.01143 1.23503 0.96356 0.99218 0.99387 1.20818 0.93070 0.95347 0.90472 1.48165 1.12882 1.54861 1.15592 1.19325 0.95874 0.92189 0.79895 1.21473 1.39034 0.94086 1.02059 0.92392 1.24932 0.95044 0.98902 0.95159 1.69946 1.41658 1.36009 1.05585 0.86452 0.78194 0.84679 0.78154 1.19795 1.20945 1.20847 1.18162 0.82290 0.78275 0.87335 1.90721 1.53763 1.57543 1.39043 1.20107 1.02061 0.94647 0.94442 1.21296 0.98024 0.99812 0.91657 1.21027 1.00524 0.95905 0.97440 1.21186 0.99126 0.94177 0.98231 1.20944 1.01501 0.99884 0.92079 1.19894 0.95765 0.92922 0.95369 1.20790 0.98083 0.98234 0.96976 1.21767 0.96784 1.00548 1.01174 0.88342 0.88843 0.87622 0.89383 0.90036 0.94856 0.93658 0.92749 0.85221 0.85853 0.86149 0.85964 0.91250 0.88338 0.93012 0.92292 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.50 14.32 29.01 0.42 -2.09 16 2 C -0.17 -2.50 9.80 -36.03 -0.35 -2.86 16 3 C 0.13 2.16 5.60 -5.19 -0.03 2.13 16 4 N -0.59 -12.60 2.45 -177.55 -0.44 -13.03 16 5 C 0.25 6.46 5.18 -5.20 -0.03 6.44 16 6 C -0.53 -14.92 9.39 -34.44 -0.32 -15.24 16 7 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 10 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 14 C 0.55 11.93 6.42 -12.33 -0.08 11.85 16 15 O -0.53 -13.60 14.65 5.32 0.08 -13.52 16 16 C -0.11 -1.89 5.00 -104.97 -0.53 -2.41 16 17 C -0.09 -1.33 7.60 -39.19 -0.30 -1.63 16 18 C -0.13 -1.57 10.03 -39.64 -0.40 -1.96 16 19 C -0.11 -1.21 10.04 -39.49 -0.40 -1.61 16 20 C -0.13 -1.54 9.67 -39.64 -0.38 -1.93 16 21 C -0.04 -0.58 5.16 -104.23 -0.54 -1.12 16 22 C -0.10 -1.53 5.60 -27.88 -0.16 -1.68 16 23 C -0.15 -1.95 9.89 37.16 0.37 -1.58 16 24 H 0.10 1.29 7.84 -52.49 -0.41 0.88 16 25 H 0.09 1.09 8.06 -52.49 -0.42 0.66 16 26 H 0.11 1.58 6.12 -52.49 -0.32 1.26 16 27 H 0.09 1.53 7.68 -51.93 -0.40 1.13 16 28 H 0.08 1.24 4.39 -51.93 -0.23 1.01 16 29 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 30 H 0.05 1.34 7.35 -51.93 -0.38 0.96 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.13 1.90 7.23 -52.49 -0.38 1.53 16 33 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 36 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 37 H 0.10 1.78 5.85 -51.93 -0.30 1.48 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.91 6.11 -51.93 -0.32 0.59 16 LS Contribution 333.76 15.07 5.03 5.03 Total: -1.00 -32.22 333.76 -8.09 -40.32 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.66 Total: 2.23 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -2.82 Total: -12.03 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.30 Total: -38.83 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.08 Total: -13.52 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.22 -8.09 -40.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293764584.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.659 kcal (2) G-P(sol) polarization free energy of solvation -32.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds