Wall clock time and date at job start Mon Mar 30 2020 01:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50705 * 119.99761 * 2 1 4 4 N 1.46501 * 109.46885 * 124.99686 * 3 2 1 5 5 C 1.46499 * 119.99908 * 264.72163 * 4 3 2 6 6 C 1.50697 * 109.47004 * 269.99808 * 5 4 3 7 7 H 1.08002 * 120.00810 * 0.02562 * 6 5 4 8 8 C 1.37885 * 120.00071 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99762 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00026 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47540 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.47155 * 120.00463 * 10 8 6 13 13 H 1.48506 * 109.47113 * 240.00208 * 10 8 6 14 14 C 1.34772 * 119.99727 * 84.72419 * 4 3 2 15 15 O 1.21554 * 119.99869 * 185.34338 * 14 4 3 16 16 C 1.47849 * 120.00449 * 5.34469 * 14 4 3 17 17 C 1.39592 * 120.14078 * 53.59316 * 16 14 4 18 18 C 1.37937 * 119.85347 * 179.97438 * 17 16 14 19 19 C 1.38387 * 120.14227 * 0.02562 * 18 17 16 20 20 C 1.38339 * 120.29233 * 359.97438 * 19 18 17 21 21 C 1.37980 * 120.14437 * 0.29804 * 20 19 18 22 22 C 1.50697 * 120.07234 * 179.70317 * 21 20 19 23 23 C 1.53000 * 109.47195 * 265.32676 * 22 21 20 24 24 H 1.08000 * 119.99842 * 0.02562 * 1 2 3 25 25 H 1.07994 * 119.99720 * 179.97438 * 1 2 3 26 26 H 1.07994 * 120.00235 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.46896 * 5.00148 * 3 2 1 28 28 H 1.08995 * 109.47206 * 245.00114 * 3 2 1 29 29 H 1.08995 * 109.47669 * 30.00154 * 5 4 3 30 30 H 1.08998 * 109.46800 * 150.00638 * 5 4 3 31 31 H 0.96998 * 120.00124 * 179.97438 * 9 8 6 32 32 H 1.07997 * 120.08049 * 359.96129 * 17 16 14 33 33 H 1.07995 * 119.93496 * 180.02562 * 18 17 16 34 34 H 1.08002 * 119.85375 * 180.02562 * 19 18 17 35 35 H 1.07993 * 119.92810 * 180.02562 * 20 19 18 36 36 H 1.09000 * 109.47406 * 25.32997 * 22 21 20 37 37 H 1.09005 * 109.47424 * 145.32907 * 22 21 20 38 38 H 1.08996 * 109.46807 * 59.99956 * 23 22 21 39 39 H 1.08997 * 109.47257 * 180.02562 * 23 22 21 40 40 H 1.09001 * 109.47057 * 299.99918 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5982 1.9693 2.3899 6 6 2.9880 3.4246 2.3602 7 1 3.4807 3.8342 1.4907 8 6 2.7148 4.2338 3.4426 9 7 2.1143 3.7354 4.5013 10 14 3.1974 6.0380 3.4055 11 1 3.8539 6.3483 2.1102 12 1 1.9826 6.8786 3.5581 13 1 4.1386 6.3216 4.5185 14 6 4.2133 0.7704 1.0146 15 8 4.9479 0.7061 1.9809 16 6 4.6577 0.2326 -0.2889 17 6 4.6209 1.0377 -1.4287 18 6 5.0375 0.5300 -2.6417 19 6 5.4907 -0.7745 -2.7302 20 6 5.5297 -1.5777 -1.6045 21 6 5.1106 -1.0838 -0.3862 22 6 5.1475 -1.9622 0.8377 23 6 3.7791 -2.6171 1.0370 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5399 -0.9353 -0.0004 26 1 1.8501 -0.9352 0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6213 1.4027 -0.9313 29 1 1.5189 1.8847 2.5166 30 1 3.1014 1.4753 3.2211 31 1 1.9224 4.3045 5.2629 32 1 4.2669 2.0557 -1.3610 33 1 5.0100 1.1518 -3.5242 34 1 5.8162 -1.1671 -3.6823 35 1 5.8849 -2.5947 -1.6803 36 1 5.9048 -2.7353 0.7075 37 1 5.3918 -1.3580 1.7115 38 1 3.5349 -3.2213 0.1634 39 1 3.8057 -3.2520 1.9225 40 1 3.0219 -1.8439 1.1674 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293764584.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:47 Heat of formation + Delta-G solvation = -11.913537 kcal Electronic energy + Delta-G solvation = -21393.729561 eV Core-core repulsion = 18366.050662 eV Total energy + Delta-G solvation = -3027.678900 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.49042 -39.30267 -37.32056 -35.19233 -35.02016 -33.70876 -32.26836 -30.41059 -29.41953 -27.05583 -25.78311 -24.61445 -23.75362 -22.05377 -21.25819 -20.04568 -18.67481 -18.20345 -17.50355 -16.91897 -16.75548 -16.30182 -16.04090 -15.47620 -15.03116 -14.77200 -14.57582 -14.42116 -14.25741 -14.12497 -13.95459 -13.39788 -13.22617 -12.94108 -12.90388 -12.74559 -12.59887 -12.42542 -12.26669 -12.19978 -11.91622 -11.74577 -11.62971 -10.68288 -10.63525 -10.38061 -9.82464 -9.62780 -9.45121 -8.25274 -6.40847 0.12424 0.43688 1.28001 1.34589 1.37021 1.49037 1.84278 2.31154 2.45474 2.83424 3.04172 3.61723 3.80810 3.91396 4.02325 4.14019 4.19071 4.32287 4.41260 4.43334 4.53736 4.57476 4.62201 4.77110 4.87985 4.94285 4.99210 5.00849 5.08345 5.17945 5.19430 5.30696 5.46493 5.49271 5.54834 5.64419 5.68645 5.73648 5.91440 6.02118 6.04347 6.64371 6.70989 7.22731 7.39225 8.82321 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.018709 B = 0.005784 C = 0.005533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.212455 B = 4839.487482 C = 5059.515284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.185 4.185 3 C 0.126 3.874 4 N -0.590 5.590 5 C 0.264 3.736 6 C -0.545 4.545 7 H 0.054 0.946 8 C 0.009 3.991 9 N -0.927 5.927 10 Si 0.969 3.031 11 H -0.266 1.266 12 H -0.267 1.267 13 H -0.281 1.281 14 C 0.549 3.451 15 O -0.590 6.590 16 C -0.137 4.137 17 C -0.103 4.103 18 C -0.122 4.122 19 C -0.093 4.093 20 C -0.120 4.120 21 C -0.051 4.051 22 C -0.104 4.104 23 C -0.140 4.140 24 H 0.101 0.899 25 H 0.119 0.881 26 H 0.108 0.892 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.021 0.979 30 H -0.003 1.003 31 H 0.268 0.732 32 H 0.122 0.878 33 H 0.157 0.843 34 H 0.164 0.836 35 H 0.155 0.845 36 H 0.097 0.903 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.441 -11.234 -17.836 21.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.204 4.204 3 C 0.004 3.996 4 N -0.319 5.319 5 C 0.143 3.857 6 C -0.583 4.583 7 H 0.072 0.928 8 C -0.190 4.190 9 N -0.567 5.567 10 Si 0.793 3.207 11 H -0.190 1.190 12 H -0.192 1.192 13 H -0.207 1.207 14 C 0.339 3.661 15 O -0.472 6.472 16 C -0.141 4.141 17 C -0.121 4.121 18 C -0.140 4.140 19 C -0.110 4.110 20 C -0.138 4.138 21 C -0.052 4.052 22 C -0.141 4.141 23 C -0.197 4.197 24 H 0.119 0.881 25 H 0.137 0.863 26 H 0.126 0.874 27 H 0.098 0.902 28 H 0.120 0.880 29 H 0.039 0.961 30 H 0.016 0.984 31 H 0.077 0.923 32 H 0.140 0.860 33 H 0.174 0.826 34 H 0.181 0.819 35 H 0.173 0.827 36 H 0.116 0.884 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 1.711 -11.194 -17.143 20.546 hybrid contribution 0.054 1.199 1.021 1.576 sum 1.765 -9.995 -16.122 19.051 Atomic orbital electron populations 1.24040 0.95176 1.03017 0.98202 1.23349 0.96893 0.98156 1.02014 1.21002 0.92539 0.96438 0.89591 1.48123 1.14081 1.54497 1.15158 1.18739 0.94260 0.91552 0.81121 1.21717 1.39304 0.95055 1.02262 0.92790 1.25877 0.94713 1.03880 0.94560 1.70066 1.42395 1.37934 1.06274 0.85342 0.78332 0.78726 0.78259 1.19046 1.19203 1.20686 1.18945 0.81379 0.77136 0.88678 1.90670 1.55230 1.59675 1.41579 1.19805 1.05334 0.96377 0.92537 1.21329 0.99153 0.99390 0.92239 1.21396 0.98820 0.96827 0.96950 1.21704 0.96563 0.93281 0.99493 1.21304 1.00094 1.01504 0.90876 1.20023 0.96381 0.92087 0.96733 1.20755 0.99507 0.98398 0.95475 1.21726 0.95322 0.99950 1.02696 0.88051 0.86334 0.87380 0.90192 0.87952 0.96071 0.98448 0.92319 0.86047 0.82569 0.81877 0.82735 0.88431 0.92889 0.90234 0.91768 0.95006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.31 14.32 67.78 0.97 -3.34 16 2 C -0.19 -5.63 9.80 25.64 0.25 -5.38 16 3 C 0.13 4.46 5.60 85.63 0.48 4.94 16 4 N -0.59 -27.15 2.45 -833.93 -2.05 -29.19 16 5 C 0.26 14.96 5.18 85.63 0.44 15.41 16 6 C -0.54 -32.32 9.39 25.60 0.24 -32.08 16 7 H 0.05 3.16 7.81 -2.91 -0.02 3.14 16 8 C 0.01 0.52 5.46 84.66 0.46 0.98 16 9 N -0.93 -57.11 13.29 21.45 0.28 -56.83 16 10 Si 0.97 45.60 29.54 68.60 2.03 47.63 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 13 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 14 C 0.55 25.39 6.42 86.79 0.56 25.94 16 15 O -0.59 -32.92 14.65 -3.89 -0.06 -32.98 16 16 C -0.14 -4.83 5.00 -20.09 -0.10 -4.93 16 17 C -0.10 -2.95 7.60 22.53 0.17 -2.78 16 18 C -0.12 -2.46 10.03 22.23 0.22 -2.23 16 19 C -0.09 -1.58 10.04 22.33 0.22 -1.36 16 20 C -0.12 -2.47 9.67 22.23 0.21 -2.25 16 21 C -0.05 -1.51 5.16 -19.61 -0.10 -1.61 16 22 C -0.10 -3.10 5.60 29.85 0.17 -2.94 16 23 C -0.14 -3.75 9.89 71.98 0.71 -3.04 16 24 H 0.10 2.56 7.84 -2.91 -0.02 2.53 16 25 H 0.12 2.48 8.06 -2.91 -0.02 2.45 16 26 H 0.11 3.25 6.12 -2.91 -0.02 3.23 16 27 H 0.08 2.89 7.68 -2.39 -0.02 2.87 16 28 H 0.10 3.14 4.39 -2.39 -0.01 3.13 16 29 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 30 H 0.00 -0.17 7.35 -2.39 -0.02 -0.19 16 31 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 32 H 0.12 3.58 7.23 -2.91 -0.02 3.56 16 33 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 34 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.10 2.26 8.05 -2.39 -0.02 2.24 16 37 H 0.05 2.08 5.85 -2.38 -0.01 2.06 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.03 1.01 6.11 -2.39 -0.01 1.00 16 Total: -1.00 -76.30 333.76 6.14 -70.16 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 1.02 Total: 15.87 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 4.92 Total: -14.65 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -1.76 Total: -86.02 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -0.06 Total: -32.98 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -76.30 6.14 -70.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293764584.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.246 kcal (2) G-P(sol) polarization free energy of solvation -76.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds