Wall clock time and date at job start Mon Mar 30 2020 00:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.47047 * 2 1 4 4 C 1.38228 * 119.99983 * 270.21531 * 3 2 1 5 5 C 1.38238 * 120.00110 * 180.21781 * 4 3 2 6 6 C 1.38234 * 119.99675 * 359.52133 * 5 4 3 7 7 C 1.50702 * 120.00257 * 180.25732 * 6 5 4 8 8 H 1.09003 * 110.88234 * 359.30780 * 7 6 5 9 9 C 1.55152 * 111.00422 * 123.17855 * 7 6 5 10 10 C 1.54370 * 102.92045 * 153.54946 * 9 7 6 11 11 N 1.47017 * 107.29048 * 337.86640 * 10 9 7 12 12 C 1.34778 * 125.65108 * 178.93969 * 11 10 9 13 13 O 1.21688 * 119.99765 * 179.97438 * 12 11 10 14 14 C 1.46370 * 120.00061 * 359.96322 * 12 11 10 15 15 H 1.08002 * 119.99575 * 359.97438 * 14 12 11 16 16 C 1.40049 * 120.00154 * 180.02562 * 14 12 11 17 17 N 1.30669 * 119.99960 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 119.99995 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47146 * 59.99768 * 18 16 14 20 20 H 1.48503 * 109.47137 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47105 * 299.99390 * 18 16 14 22 22 C 1.47429 * 108.70143 * 358.90590 * 11 10 9 23 23 C 1.38235 * 120.00220 * 0.28720 * 6 5 4 24 24 C 1.38234 * 119.99892 * 89.99751 * 3 2 1 25 25 H 1.08996 * 109.47485 * 59.99707 * 1 2 3 26 26 H 1.08997 * 109.47157 * 180.02562 * 1 2 3 27 27 H 1.09010 * 109.47206 * 300.00110 * 1 2 3 28 28 H 1.08998 * 109.47065 * 240.00315 * 2 1 3 29 29 H 1.08992 * 109.47195 * 119.99596 * 2 1 3 30 30 H 1.08004 * 120.00281 * 0.02562 * 4 3 2 31 31 H 1.08002 * 120.00519 * 179.80752 * 5 4 3 32 32 H 1.08998 * 110.72752 * 271.94479 * 9 7 6 33 33 H 1.09006 * 110.72070 * 35.22297 * 9 7 6 34 34 H 1.09004 * 109.90319 * 218.42717 * 10 9 7 35 35 H 1.09005 * 109.97635 * 97.34636 * 10 9 7 36 36 H 0.97005 * 120.00494 * 180.02562 * 17 16 14 37 37 H 1.09001 * 110.36443 * 265.28879 * 22 11 10 38 38 H 1.08996 * 110.36768 * 142.96842 * 22 11 10 39 39 H 1.07996 * 120.00471 * 179.97438 * 23 6 5 40 40 H 1.08001 * 120.00324 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2584 2.0740 -1.1971 5 6 2.7235 3.3758 -1.1971 6 6 2.9530 4.0277 0.0000 7 6 3.4545 5.4489 0.0001 8 1 3.5958 5.8111 -1.0182 9 6 2.4960 6.3768 0.7922 10 6 3.4280 7.5127 1.2656 11 7 4.8005 6.9857 1.2525 12 6 5.9102 7.6764 1.5810 13 8 6.9994 7.1358 1.5340 14 6 5.8053 9.0767 1.9941 15 1 4.8386 9.5565 2.0353 16 6 6.9585 9.7945 2.3350 17 7 8.1281 9.2141 2.2847 18 14 6.8247 11.5817 2.8615 19 1 5.9709 11.6784 4.0726 20 1 8.1783 12.1104 3.1672 21 1 6.2186 12.3771 1.7637 22 6 4.7617 5.5765 0.8213 23 6 2.7231 3.3760 1.1972 24 6 2.2626 2.0725 1.1972 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 2.0747 1.5662 -2.1324 31 1 2.9032 3.8851 -2.1324 32 1 1.7117 6.7659 0.1430 33 1 2.0665 5.8503 1.6447 34 1 3.1576 7.8176 2.2766 35 1 3.3512 8.3638 0.5889 36 1 8.9269 9.7111 2.5211 37 1 4.7316 4.9154 1.6875 38 1 5.6255 5.3467 0.1976 39 1 2.9027 3.8851 2.1325 40 1 2.0830 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294347659.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:58 Heat of formation + Delta-G solvation = -28.796795 kcal Electronic energy + Delta-G solvation = -20262.999157 eV Core-core repulsion = 17234.588144 eV Total energy + Delta-G solvation = -3028.411013 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.82393 -38.15404 -35.90397 -34.14356 -32.48904 -31.15025 -30.88348 -28.97800 -27.86657 -26.03601 -23.93430 -22.78635 -22.31636 -21.13924 -19.80069 -19.06165 -16.75438 -16.50299 -15.65842 -15.47187 -15.10860 -14.61094 -14.22390 -13.84093 -13.71176 -13.51494 -13.27120 -13.09486 -12.90670 -12.63651 -12.18667 -12.05179 -11.85206 -11.44758 -11.31705 -11.18325 -11.09138 -10.93974 -10.84424 -10.75025 -10.61661 -10.30770 -10.21634 -10.17392 -8.86435 -8.84080 -8.39946 -7.63348 -7.16604 -6.19228 -4.64068 1.37408 1.46205 3.15918 3.20539 3.22582 3.76697 4.08792 4.52482 4.56329 4.66841 4.73166 4.97186 4.99584 5.04634 5.15553 5.21855 5.27044 5.36191 5.47246 5.52157 5.53518 5.68497 5.78760 5.81001 5.83444 5.92201 5.95579 6.07373 6.14254 6.15539 6.41081 6.47815 6.49756 6.56744 6.62757 6.68342 6.82616 7.06444 7.40324 7.44385 8.11190 8.42478 9.02090 9.50904 10.58374 10.77286 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.047441 B = 0.003326 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.065518 B = 8416.244676 C = 8588.087472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.094 4.094 4 C -0.118 4.118 5 C -0.114 4.114 6 C -0.063 4.063 7 C -0.068 4.068 8 H 0.086 0.914 9 C -0.122 4.122 10 C 0.120 3.880 11 N -0.646 5.646 12 C 0.571 3.429 13 O -0.577 6.577 14 C -0.539 4.539 15 H 0.069 0.931 16 C 0.086 3.914 17 N -0.768 5.768 18 Si 0.909 3.091 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.268 1.268 22 C 0.126 3.874 23 C -0.109 4.109 24 C -0.116 4.116 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.269 0.731 37 H 0.047 0.953 38 H 0.064 0.936 39 H 0.124 0.876 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.424 -12.799 -4.652 20.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.136 4.136 5 C -0.132 4.132 6 C -0.064 4.064 7 C -0.087 4.087 8 H 0.105 0.895 9 C -0.160 4.160 10 C -0.004 4.004 11 N -0.387 5.387 12 C 0.378 3.622 13 O -0.459 6.459 14 C -0.575 4.575 15 H 0.087 0.913 16 C -0.133 4.133 17 N -0.397 5.397 18 Si 0.733 3.267 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.192 1.192 22 C 0.002 3.998 23 C -0.127 4.127 24 C -0.134 4.134 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.135 0.865 31 H 0.139 0.861 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.142 0.858 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.512 -13.021 -4.617 20.036 hybrid contribution -0.136 0.930 0.247 0.972 sum -14.648 -12.091 -4.370 19.490 Atomic orbital electron populations 1.21747 0.94923 1.01441 1.02226 1.20512 0.96016 0.92935 1.02616 1.19831 1.00131 0.96106 0.93310 1.20940 1.00485 0.94900 0.97298 1.21050 0.99775 0.94781 0.97606 1.19745 0.98127 0.95377 0.93110 1.21389 0.96122 0.90775 1.00415 0.89533 1.22763 0.97265 0.96524 0.99476 1.21602 0.83278 0.95457 1.00098 1.48727 1.06295 1.10216 1.73414 1.18031 0.80592 0.86654 0.76971 1.90611 1.25938 1.71135 1.58237 1.20860 0.94065 0.94596 1.48015 0.91302 1.25738 0.94763 0.99459 0.93376 1.70013 0.98423 1.36470 1.34810 0.86416 0.77944 0.82630 0.79673 1.19248 1.20527 1.19240 1.21840 0.95386 0.86160 0.96426 1.21057 0.98954 0.94618 0.98064 1.20978 1.00228 0.94877 0.97355 0.92613 0.92623 0.92564 0.91268 0.91212 0.86470 0.86150 0.90922 0.91096 0.92837 0.92780 0.92001 0.93485 0.91754 0.85830 0.86383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.89 37.16 0.37 -0.71 16 2 C -0.08 -0.69 6.06 -27.88 -0.17 -0.86 16 3 C -0.09 -1.02 5.13 -104.62 -0.54 -1.55 16 4 C -0.12 -1.31 9.70 -39.59 -0.38 -1.69 16 5 C -0.11 -1.40 9.69 -39.58 -0.38 -1.78 16 6 C -0.06 -0.86 5.00 -104.62 -0.52 -1.39 16 7 C -0.07 -1.04 3.26 -89.63 -0.29 -1.33 16 8 H 0.09 1.30 7.96 -51.93 -0.41 0.89 16 9 C -0.12 -1.77 6.37 -24.87 -0.16 -1.93 16 10 C 0.12 2.25 6.05 -3.04 -0.02 2.23 16 11 N -0.65 -15.25 3.33 -172.15 -0.57 -15.83 16 12 C 0.57 16.82 7.78 -12.99 -0.10 16.72 16 13 O -0.58 -19.31 15.28 5.20 0.08 -19.23 16 14 C -0.54 -15.48 9.06 -35.63 -0.32 -15.81 16 15 H 0.07 1.81 7.16 -52.49 -0.38 1.44 16 16 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 17 N -0.77 -23.37 11.83 55.55 0.66 -22.71 16 18 Si 0.91 20.31 29.56 -169.99 -5.02 15.29 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 22 C 0.13 2.53 6.32 -2.53 -0.02 2.51 16 23 C -0.11 -1.43 8.28 -39.58 -0.33 -1.76 16 24 C -0.12 -1.35 9.70 -39.58 -0.38 -1.74 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 29 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 30 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 31 H 0.12 1.31 7.98 -52.49 -0.42 0.89 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.96 6.98 -51.93 -0.36 0.59 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.27 7.42 8.29 -40.82 -0.34 7.08 16 37 H 0.05 0.93 6.85 -51.93 -0.36 0.57 16 38 H 0.06 1.41 8.04 -51.93 -0.42 0.99 16 39 H 0.12 1.63 7.02 -52.49 -0.37 1.26 16 40 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 330.53 15.07 4.98 4.98 Total: -1.00 -34.61 330.53 -9.29 -43.91 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -6.07 Total: 0.34 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -3.34 Total: -6.76 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.08 Total: -38.54 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: 0.08 Total: -19.23 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.61 -9.29 -43.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294347659.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.108 kcal (2) G-P(sol) polarization free energy of solvation -34.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds