Wall clock time and date at job start Mon Mar 30 2020 02:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47255 * 2 1 4 4 N 1.46499 * 109.46731 * 120.00129 * 2 1 3 5 5 C 1.34775 * 119.99994 * 125.95642 * 4 2 1 6 6 O 1.21549 * 120.00261 * 186.46223 * 5 4 2 7 7 C 1.47882 * 120.00082 * 6.45702 * 5 4 2 8 8 C 1.39929 * 120.02424 * 28.74309 * 7 5 4 9 9 C 1.38326 * 120.35791 * 179.97438 * 8 7 5 10 10 C 1.37751 * 120.41585 * 0.02562 * 9 8 7 11 11 C 1.40757 * 120.03620 * 359.97438 * 10 9 8 12 12 C 1.41436 * 120.17436 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00009 * 27.45057 * 12 11 10 14 14 C 1.39939 * 119.99597 * 207.44815 * 12 11 10 15 15 N 1.30827 * 120.00418 * 7.96888 * 14 12 11 16 16 Si 1.86799 * 119.99730 * 187.97050 * 14 12 11 17 17 H 1.48504 * 109.47179 * 59.99965 * 16 14 12 18 18 H 1.48499 * 109.47151 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46994 * 300.00066 * 16 14 12 20 20 C 1.38986 * 120.02955 * 208.74041 * 7 5 4 21 21 C 1.46504 * 120.00142 * 305.94928 * 4 2 1 22 22 C 1.53002 * 117.49869 * 195.85722 * 21 4 2 23 23 C 1.52997 * 117.49970 * 127.23521 * 21 4 2 24 24 H 1.08998 * 109.47233 * 300.00115 * 1 2 3 25 25 H 1.09004 * 109.47072 * 59.99897 * 1 2 3 26 26 H 1.09000 * 109.47354 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46737 * 239.99707 * 2 1 3 28 28 H 1.08994 * 109.47119 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47342 * 300.00510 * 3 2 1 30 30 H 1.09008 * 109.47006 * 59.99824 * 3 2 1 31 31 H 1.08001 * 119.81681 * 0.27556 * 8 7 5 32 32 H 1.08005 * 119.79157 * 180.02562 * 9 8 7 33 33 H 1.07994 * 119.98145 * 179.97438 * 10 9 8 34 34 H 0.96996 * 120.00337 * 179.97438 * 15 14 12 35 35 H 1.08001 * 120.20232 * 0.02605 * 20 7 5 36 36 H 1.09004 * 115.54830 * 341.56125 * 21 4 2 37 37 H 1.08996 * 117.49691 * 359.97438 * 22 21 4 38 38 H 1.08992 * 117.49750 * 145.02199 * 22 21 4 39 39 H 1.09001 * 117.49951 * 214.98507 * 23 21 4 40 40 H 1.09005 * 117.49886 * 359.97321 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8890 -1.7123 1.0762 6 8 3.2037 -2.3609 2.0548 7 6 3.4616 -2.0444 -0.2462 8 6 3.6203 -1.0441 -1.2117 9 6 4.1557 -1.3469 -2.4507 10 6 4.5382 -2.6362 -2.7489 11 6 4.3862 -3.6558 -1.7904 12 6 4.7775 -4.9807 -2.0937 13 1 5.5597 -5.1607 -2.8163 14 6 4.1511 -6.0582 -1.4573 15 7 3.1028 -5.8524 -0.7022 16 14 4.8120 -7.7903 -1.6860 17 1 6.2142 -7.8532 -1.2012 18 1 3.9772 -8.7447 -0.9130 19 1 4.7695 -8.1501 -3.1262 20 6 3.8426 -3.3503 -0.5311 21 6 1.5602 -0.2706 2.5228 22 6 2.3604 -0.7563 3.7331 23 6 0.9789 -1.3461 3.4427 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.3278 -0.0292 -0.9865 32 1 4.2745 -0.5676 -3.1890 33 1 4.9550 -2.8649 -3.7186 34 1 2.6684 -6.5993 -0.2614 35 1 3.7216 -4.1257 0.2109 36 1 1.1231 0.7266 2.5754 37 1 3.2275 -1.3887 3.5422 38 1 2.4500 -0.0787 4.5820 39 1 0.1595 -1.0565 4.1007 40 1 0.9369 -2.3662 3.0607 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298600072.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:37 Heat of formation + Delta-G solvation = 34.617606 kcal Electronic energy + Delta-G solvation = -21474.983239 eV Core-core repulsion = 18449.322081 eV Total energy + Delta-G solvation = -3025.661158 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.16495 -37.42770 -36.27242 -35.24941 -33.59415 -30.80744 -29.92432 -29.33674 -27.14682 -25.46186 -23.50654 -22.10790 -22.01148 -20.85206 -20.74007 -18.54199 -17.34101 -16.37144 -15.68681 -15.31005 -14.97235 -14.58504 -14.26789 -13.76853 -13.53173 -13.29746 -13.03111 -12.81935 -12.66899 -12.50569 -12.16459 -11.67988 -11.66702 -11.37151 -11.19214 -11.09998 -10.97040 -10.90334 -10.61718 -10.46683 -10.20735 -10.04494 -9.91511 -9.65402 -9.24553 -8.67648 -7.99776 -7.58657 -7.44166 -6.73548 -4.45020 2.23277 2.80968 3.06898 3.09034 3.13418 3.34926 3.70162 3.91727 4.26669 4.61978 4.97458 5.11215 5.17200 5.26282 5.35021 5.44404 5.54460 5.67938 5.69576 5.80844 5.90441 5.94287 5.99516 6.05850 6.14936 6.28870 6.34099 6.40609 6.45385 6.69071 6.71093 6.98087 7.02184 7.20044 7.23639 7.38866 7.67056 7.77506 7.90749 8.03710 8.17547 8.50506 8.80778 8.82709 8.93232 10.17837 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.020638 B = 0.005927 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.397512 B = 4722.788753 C = 5557.206686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.101 3.899 3 C -0.164 4.164 4 N -0.581 5.581 5 C 0.569 3.431 6 O -0.539 6.539 7 C -0.129 4.129 8 C -0.234 4.234 9 C -0.102 4.102 10 C -0.208 4.208 11 C 0.097 3.903 12 C -0.457 4.457 13 H 0.079 0.921 14 C 0.070 3.930 15 N -0.797 5.797 16 Si 0.915 3.085 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.265 1.265 20 C -0.090 4.090 21 C 0.077 3.923 22 C -0.196 4.196 23 C -0.190 4.190 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.137 0.863 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.115 0.885 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.283 0.717 35 H 0.139 0.861 36 H 0.120 0.880 37 H 0.138 0.862 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.702 9.731 2.176 11.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.002 4.002 3 C -0.222 4.222 4 N -0.312 5.312 5 C 0.362 3.638 6 O -0.418 6.418 7 C -0.132 4.132 8 C -0.253 4.253 9 C -0.120 4.120 10 C -0.228 4.228 11 C 0.094 3.906 12 C -0.487 4.487 13 H 0.097 0.903 14 C -0.147 4.147 15 N -0.423 5.423 16 Si 0.740 3.260 17 H -0.188 1.188 18 H -0.203 1.203 19 H -0.190 1.190 20 C -0.110 4.110 21 C -0.028 4.028 22 C -0.233 4.233 23 C -0.229 4.229 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.154 0.846 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.133 0.867 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.156 0.844 36 H 0.137 0.863 37 H 0.156 0.844 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.720 9.249 2.821 10.761 hybrid contribution 0.007 -0.660 -0.081 0.665 sum -4.713 8.589 2.740 10.173 Atomic orbital electron populations 1.22137 0.95472 1.02433 1.01567 1.22083 0.94134 0.93535 0.90431 1.22218 1.01942 0.96193 1.01813 1.47297 1.45013 1.34021 1.04895 1.18960 0.77295 0.77950 0.89633 1.90518 1.61779 1.50295 1.39255 1.19513 1.05345 0.95927 0.92410 1.21005 1.10951 0.98043 0.95310 1.20476 0.99785 0.95901 0.95855 1.21163 1.09342 0.93633 0.98645 1.17624 0.89913 0.92921 0.90105 1.19568 1.17937 0.90115 1.21060 0.90266 1.25944 0.93685 1.01879 0.93207 1.69723 1.15272 1.34152 1.23148 0.86247 0.79882 0.80567 0.79320 1.18814 1.20262 1.19009 1.21772 0.98529 0.93476 0.97235 1.21422 1.03810 0.96817 0.80764 1.23821 0.98485 1.04053 0.96934 1.23210 0.96631 0.99802 1.03211 0.92904 0.91770 0.92184 0.84586 0.91776 0.91604 0.92732 0.86708 0.88850 0.88640 0.90605 0.84368 0.86287 0.84416 0.89965 0.89391 0.88449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.10 37.16 0.34 -1.68 16 2 C 0.10 1.50 2.38 -67.93 -0.16 1.34 16 3 C -0.16 -1.98 8.49 37.16 0.32 -1.66 16 4 N -0.58 -10.20 2.73 -159.66 -0.44 -10.63 16 5 C 0.57 12.53 7.24 -12.31 -0.09 12.44 16 6 O -0.54 -13.07 12.43 5.32 0.07 -13.00 16 7 C -0.13 -3.02 5.46 -105.04 -0.57 -3.60 16 8 C -0.23 -4.83 7.38 -38.92 -0.29 -5.12 16 9 C -0.10 -2.12 10.01 -39.73 -0.40 -2.52 16 10 C -0.21 -4.87 9.78 -38.81 -0.38 -5.25 16 11 C 0.10 2.54 5.58 -106.87 -0.60 1.94 16 12 C -0.46 -11.96 9.08 -37.73 -0.34 -12.30 16 13 H 0.08 1.96 7.86 -52.48 -0.41 1.55 16 14 C 0.07 1.76 5.31 -17.34 -0.09 1.67 16 15 N -0.80 -20.92 10.61 55.55 0.59 -20.34 16 16 Si 0.92 18.84 29.57 -169.99 -5.03 13.81 16 17 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 18 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 19 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 20 C -0.09 -2.38 8.22 -38.45 -0.32 -2.70 16 21 C 0.08 1.17 5.38 -67.93 -0.37 0.80 16 22 C -0.20 -3.13 9.63 -26.73 -0.26 -3.38 16 23 C -0.19 -2.95 9.88 -26.73 -0.26 -3.21 16 24 H 0.05 0.61 7.32 -51.93 -0.38 0.23 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.14 2.32 3.97 -51.93 -0.21 2.12 16 28 H 0.06 0.84 6.97 -51.93 -0.36 0.48 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.60 7.25 -51.92 -0.38 0.22 16 31 H 0.12 2.02 3.45 -52.49 -0.18 1.84 16 32 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 33 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 34 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 35 H 0.14 3.97 5.84 -52.49 -0.31 3.67 16 36 H 0.12 1.48 7.04 -51.93 -0.37 1.11 16 37 H 0.14 2.70 5.20 -52.18 -0.27 2.43 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.10 1.81 7.62 -51.93 -0.40 1.41 16 LS Contribution 317.19 15.07 4.78 4.78 Total: -1.00 -28.13 317.19 -8.84 -36.97 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -5.35 Total: 11.63 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: -3.47 Total: -23.22 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: 0.15 Total: -30.97 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.07 Total: -13.00 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.13 -8.84 -36.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298600072.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.589 kcal (2) G-P(sol) polarization free energy of solvation -28.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds