Wall clock time and date at job start Mon Mar 30 2020 02:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47255 * 2 1 4 4 N 1.46499 * 109.46731 * 120.00129 * 2 1 3 5 5 C 1.34775 * 119.99994 * 125.95642 * 4 2 1 6 6 O 1.21549 * 120.00261 * 186.46223 * 5 4 2 7 7 C 1.47882 * 120.00082 * 6.45702 * 5 4 2 8 8 C 1.39929 * 120.02424 * 28.74309 * 7 5 4 9 9 C 1.38326 * 120.35791 * 179.97438 * 8 7 5 10 10 C 1.37751 * 120.41585 * 0.02562 * 9 8 7 11 11 C 1.40757 * 120.03620 * 359.97438 * 10 9 8 12 12 C 1.41436 * 120.17436 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00009 * 27.45057 * 12 11 10 14 14 C 1.39939 * 119.99597 * 207.44815 * 12 11 10 15 15 N 1.30827 * 120.00418 * 7.96888 * 14 12 11 16 16 Si 1.86799 * 119.99730 * 187.97050 * 14 12 11 17 17 H 1.48504 * 109.47179 * 59.99965 * 16 14 12 18 18 H 1.48499 * 109.47151 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46994 * 300.00066 * 16 14 12 20 20 C 1.38986 * 120.02955 * 208.74041 * 7 5 4 21 21 C 1.46504 * 120.00142 * 305.94928 * 4 2 1 22 22 C 1.53002 * 117.49869 * 195.85722 * 21 4 2 23 23 C 1.52997 * 117.49970 * 127.23521 * 21 4 2 24 24 H 1.08998 * 109.47233 * 300.00115 * 1 2 3 25 25 H 1.09004 * 109.47072 * 59.99897 * 1 2 3 26 26 H 1.09000 * 109.47354 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46737 * 239.99707 * 2 1 3 28 28 H 1.08994 * 109.47119 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47342 * 300.00510 * 3 2 1 30 30 H 1.09008 * 109.47006 * 59.99824 * 3 2 1 31 31 H 1.08001 * 119.81681 * 0.27556 * 8 7 5 32 32 H 1.08005 * 119.79157 * 180.02562 * 9 8 7 33 33 H 1.07994 * 119.98145 * 179.97438 * 10 9 8 34 34 H 0.96996 * 120.00337 * 179.97438 * 15 14 12 35 35 H 1.08001 * 120.20232 * 0.02605 * 20 7 5 36 36 H 1.09004 * 115.54830 * 341.56125 * 21 4 2 37 37 H 1.08996 * 117.49691 * 359.97438 * 22 21 4 38 38 H 1.08992 * 117.49750 * 145.02199 * 22 21 4 39 39 H 1.09001 * 117.49951 * 214.98507 * 23 21 4 40 40 H 1.09005 * 117.49886 * 359.97321 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8890 -1.7123 1.0762 6 8 3.2037 -2.3609 2.0548 7 6 3.4616 -2.0444 -0.2462 8 6 3.6203 -1.0441 -1.2117 9 6 4.1557 -1.3469 -2.4507 10 6 4.5382 -2.6362 -2.7489 11 6 4.3862 -3.6558 -1.7904 12 6 4.7775 -4.9807 -2.0937 13 1 5.5597 -5.1607 -2.8163 14 6 4.1511 -6.0582 -1.4573 15 7 3.1028 -5.8524 -0.7022 16 14 4.8120 -7.7903 -1.6860 17 1 6.2142 -7.8532 -1.2012 18 1 3.9772 -8.7447 -0.9130 19 1 4.7695 -8.1501 -3.1262 20 6 3.8426 -3.3503 -0.5311 21 6 1.5602 -0.2706 2.5228 22 6 2.3604 -0.7563 3.7331 23 6 0.9789 -1.3461 3.4427 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.3278 -0.0292 -0.9865 32 1 4.2745 -0.5676 -3.1890 33 1 4.9550 -2.8649 -3.7186 34 1 2.6684 -6.5993 -0.2614 35 1 3.7216 -4.1257 0.2109 36 1 1.1231 0.7266 2.5754 37 1 3.2275 -1.3887 3.5422 38 1 2.4500 -0.0787 4.5820 39 1 0.1595 -1.0565 4.1007 40 1 0.9369 -2.3662 3.0607 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298600072.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:37 Heat of formation + Delta-G solvation = 19.833446 kcal Electronic energy + Delta-G solvation = -21475.624328 eV Core-core repulsion = 18449.322081 eV Total energy + Delta-G solvation = -3026.302247 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.69819 -39.16192 -37.78548 -36.62410 -35.38713 -32.30415 -31.64612 -31.08634 -28.18672 -27.27550 -25.10659 -23.53652 -23.27601 -22.54561 -22.26984 -20.18072 -19.00523 -17.84580 -17.34035 -16.93250 -16.61914 -16.10580 -15.84739 -15.10971 -14.96341 -14.83996 -14.44791 -14.41438 -14.18312 -14.08901 -13.45255 -13.15862 -12.86316 -12.81122 -12.80258 -12.58620 -12.52247 -12.23479 -12.11970 -11.80552 -11.75914 -11.69395 -11.38496 -11.26877 -11.04361 -10.33127 -9.56646 -9.29397 -9.25983 -8.59825 -6.41772 0.42385 1.00401 1.34950 1.46773 1.47906 1.88838 2.06365 2.18616 2.75419 3.01160 3.60907 3.68417 3.90807 3.97777 4.09185 4.17597 4.28818 4.41396 4.46690 4.57787 4.60836 4.79631 4.83421 4.89098 4.90182 4.97782 5.06134 5.08888 5.13392 5.21292 5.29326 5.32828 5.40685 5.43169 5.52294 5.85392 5.85934 5.94805 6.06984 6.27801 6.42843 6.63064 6.88104 6.94422 7.28545 8.32926 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.020638 B = 0.005927 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.397512 B = 4722.788753 C = 5557.206686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.091 3.909 3 C -0.158 4.158 4 N -0.572 5.572 5 C 0.556 3.444 6 O -0.576 6.576 7 C -0.141 4.141 8 C -0.209 4.209 9 C -0.100 4.100 10 C -0.212 4.212 11 C 0.063 3.937 12 C -0.495 4.495 13 H 0.083 0.917 14 C 0.024 3.976 15 N -0.837 5.837 16 Si 0.987 3.013 17 H -0.261 1.261 18 H -0.273 1.273 19 H -0.253 1.253 20 C -0.128 4.128 21 C 0.079 3.921 22 C -0.203 4.203 23 C -0.190 4.190 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.033 0.967 27 H 0.111 0.889 28 H 0.053 0.947 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.154 0.846 32 H 0.141 0.859 33 H 0.109 0.891 34 H 0.283 0.717 35 H 0.102 0.898 36 H 0.166 0.834 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.125 0.875 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.754 13.137 1.583 14.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 C -0.215 4.215 4 N -0.302 5.302 5 C 0.348 3.652 6 O -0.458 6.458 7 C -0.144 4.144 8 C -0.228 4.228 9 C -0.117 4.117 10 C -0.232 4.232 11 C 0.061 3.939 12 C -0.525 4.525 13 H 0.101 0.899 14 C -0.188 4.188 15 N -0.464 5.464 16 Si 0.807 3.193 17 H -0.185 1.185 18 H -0.198 1.198 19 H -0.177 1.177 20 C -0.148 4.148 21 C -0.024 4.024 22 C -0.240 4.240 23 C -0.228 4.228 24 H 0.092 0.908 25 H 0.109 0.891 26 H 0.052 0.948 27 H 0.128 0.872 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.171 0.829 32 H 0.158 0.842 33 H 0.127 0.873 34 H 0.094 0.906 35 H 0.120 0.880 36 H 0.183 0.817 37 H 0.114 0.886 38 H 0.136 0.864 39 H 0.144 0.856 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.793 12.704 2.205 14.136 hybrid contribution 0.276 -1.503 0.114 1.532 sum -5.518 11.201 2.319 12.700 Atomic orbital electron populations 1.22101 0.93456 1.01512 1.03955 1.22273 0.95814 0.94840 0.88121 1.22184 1.01196 0.93833 1.04323 1.47388 1.43222 1.32467 1.07121 1.18939 0.78438 0.79178 0.88667 1.90530 1.63383 1.51860 1.39996 1.19837 1.04924 0.95554 0.94080 1.21498 1.08015 0.99008 0.94286 1.20966 0.98068 0.95941 0.96769 1.21462 1.08861 0.94248 0.98625 1.17973 0.91033 0.94119 0.90766 1.19853 1.19075 0.91051 1.22510 0.89927 1.26850 0.93520 1.05953 0.92507 1.69861 1.16812 1.35161 1.24565 0.85179 0.79022 0.75293 0.79787 1.18537 1.19755 1.17655 1.21542 1.01861 0.94271 0.97163 1.21882 1.03091 0.98371 0.79075 1.23696 0.97071 1.04453 0.98799 1.23178 0.97717 0.97873 1.04048 0.90813 0.89079 0.94801 0.87158 0.92842 0.88759 0.90680 0.82888 0.84162 0.87255 0.90631 0.88046 0.81693 0.88629 0.86438 0.85647 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 9.10 71.98 0.66 -2.70 16 2 C 0.09 2.44 2.38 44.99 0.11 2.54 16 3 C -0.16 -3.00 8.49 71.98 0.61 -2.39 16 4 N -0.57 -19.44 2.73 -777.34 -2.12 -21.56 16 5 C 0.56 25.38 7.24 86.80 0.63 26.01 16 6 O -0.58 -29.92 12.43 -3.87 -0.05 -29.96 16 7 C -0.14 -6.84 5.46 -20.13 -0.11 -6.95 16 8 C -0.21 -8.37 7.38 22.70 0.17 -8.20 16 9 C -0.10 -3.94 10.01 22.18 0.22 -3.72 16 10 C -0.21 -9.95 9.78 22.77 0.22 -9.73 16 11 C 0.06 3.48 5.58 -21.32 -0.12 3.37 16 12 C -0.49 -27.33 9.08 23.47 0.21 -27.12 16 13 H 0.08 4.29 7.86 -2.91 -0.02 4.27 16 14 C 0.02 1.30 5.31 85.25 0.45 1.75 16 15 N -0.84 -47.30 10.61 21.82 0.23 -47.07 16 16 Si 0.99 40.35 29.57 68.60 2.03 42.38 16 17 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 18 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 19 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 20 C -0.13 -7.24 8.22 23.01 0.19 -7.05 16 21 C 0.08 2.22 5.38 44.99 0.24 2.46 16 22 C -0.20 -6.29 9.63 30.59 0.29 -6.00 16 23 C -0.19 -5.71 9.88 30.59 0.30 -5.41 16 24 H 0.07 1.33 7.32 -2.39 -0.02 1.31 16 25 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 26 H 0.03 0.91 8.14 -2.39 -0.02 0.90 16 27 H 0.11 3.52 3.97 -2.39 -0.01 3.51 16 28 H 0.05 1.16 6.97 -2.39 -0.02 1.14 16 29 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.17 7.25 -2.38 -0.02 1.15 16 31 H 0.15 4.89 3.45 -2.91 -0.01 4.88 16 32 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 33 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 34 H 0.28 14.84 8.30 -92.71 -0.77 14.07 16 35 H 0.10 6.43 5.84 -2.91 -0.02 6.42 16 36 H 0.17 3.16 7.04 -2.38 -0.02 3.14 16 37 H 0.10 3.92 5.20 -6.37 -0.03 3.88 16 38 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 39 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.05 2.14 7.62 -2.38 -0.02 2.12 16 Total: -1.00 -69.27 317.19 5.20 -64.07 By element: Atomic # 1 Polarization: 34.24 SS G_CDS: 1.03 Total: 35.27 kcal Atomic # 6 Polarization: -47.21 SS G_CDS: 4.08 Total: -43.13 kcal Atomic # 7 Polarization: -66.74 SS G_CDS: -1.89 Total: -68.63 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.05 Total: -29.96 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -69.27 5.20 -64.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298600072.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.908 kcal (2) G-P(sol) polarization free energy of solvation -69.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds