Wall clock time and date at job start Mon Mar 30 2020 02:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46748 * 2 1 4 4 H 1.09003 * 109.47481 * 304.49874 * 3 2 1 5 5 C 1.50707 * 109.47080 * 184.50070 * 3 2 1 6 6 O 1.21292 * 120.00363 * 246.97891 * 5 3 2 7 7 N 1.34776 * 119.99549 * 66.98068 * 5 3 2 8 8 C 1.37099 * 119.99993 * 185.00447 * 7 5 3 9 9 H 1.08004 * 119.99822 * 325.70617 * 8 7 5 10 10 C 1.38943 * 120.00382 * 145.98089 * 8 7 5 11 11 N 1.31413 * 119.99677 * 4.12654 * 10 8 7 12 12 Si 1.86802 * 120.00319 * 184.13172 * 10 8 7 13 13 H 1.48489 * 109.47215 * 59.99839 * 12 10 8 14 14 H 1.48502 * 109.46923 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46743 * 299.99799 * 12 10 8 16 16 C 1.46498 * 120.00175 * 5.00390 * 7 5 3 17 17 C 1.53006 * 117.49714 * 132.56402 * 16 7 5 18 18 C 1.52996 * 117.50043 * 63.94376 * 16 7 5 19 19 C 1.50699 * 109.47524 * 64.50449 * 3 2 1 20 20 C 1.38243 * 119.99786 * 59.72247 * 19 3 2 21 21 C 1.38235 * 119.99630 * 179.81332 * 20 19 3 22 22 C 1.38236 * 120.00178 * 0.39945 * 21 20 19 23 23 C 1.38235 * 120.00103 * 359.85289 * 22 21 20 24 24 C 1.38230 * 120.00163 * 240.00183 * 19 3 2 25 25 H 1.08999 * 109.46613 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47049 * 299.99821 * 1 2 3 27 27 H 1.09003 * 109.47123 * 60.00071 * 1 2 3 28 28 H 1.08998 * 109.47049 * 240.00179 * 2 1 3 29 29 H 1.08994 * 109.47285 * 119.99650 * 2 1 3 30 30 H 0.97003 * 119.99678 * 184.99678 * 11 10 8 31 31 H 1.09000 * 115.55063 * 278.27021 * 16 7 5 32 32 H 1.08996 * 117.49911 * 359.97438 * 17 16 7 33 33 H 1.09005 * 117.49487 * 145.02000 * 17 16 7 34 34 H 1.08999 * 117.50070 * 214.97971 * 18 16 7 35 35 H 1.09001 * 117.49983 * 359.97438 * 18 16 7 36 36 H 1.07995 * 119.99944 * 359.97438 * 20 19 3 37 37 H 1.08000 * 120.00225 * 180.22910 * 21 20 19 38 38 H 1.08002 * 120.00203 * 179.83476 * 22 21 20 39 39 H 1.08005 * 120.00282 * 179.97438 * 23 22 21 40 40 H 1.08004 * 120.00274 * 359.97081 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6123 1.9791 -0.8469 5 6 3.5429 1.4441 -0.1115 6 8 4.2197 1.8300 0.8181 7 7 4.1349 1.0166 -1.2443 8 6 5.5010 0.9208 -1.3097 9 1 6.1182 1.6318 -0.7805 10 6 6.0916 -0.0875 -2.0615 11 7 5.3436 -0.8993 -2.7746 12 14 7.9487 -0.2893 -2.0584 13 1 8.4155 -0.5539 -0.6739 14 1 8.3241 -1.4291 -2.9332 15 1 8.5825 0.9543 -2.5654 16 6 3.3188 0.6543 -2.4057 17 6 3.7365 1.2169 -3.7658 18 6 2.4925 1.7622 -3.0617 19 6 1.6308 2.1201 1.2824 20 6 2.0517 1.6121 2.4973 21 6 1.6796 2.2358 3.6734 22 6 0.8798 3.3627 3.6352 23 6 0.4546 3.8676 2.4206 24 6 0.8299 3.2460 1.2442 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 5.7483 -1.6472 -3.2414 31 1 2.8906 -0.3479 -2.3851 32 1 4.6183 1.8568 -3.7965 33 1 3.5833 0.5846 -4.6405 34 1 1.5208 1.4889 -3.4732 35 1 2.5557 2.7606 -2.6290 36 1 2.6734 0.7295 2.5273 37 1 2.0114 1.8412 4.6224 38 1 0.5868 3.8484 4.5542 39 1 -0.1706 4.7477 2.3907 40 1 0.4977 3.6406 0.2953 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299300086.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:04 Heat of formation + Delta-G solvation = 17.241954 kcal Electronic energy + Delta-G solvation = -21691.110992 eV Core-core repulsion = 18664.696369 eV Total energy + Delta-G solvation = -3026.414623 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 4.35 seconds Orbital eigenvalues (eV) -39.70483 -38.19781 -36.03522 -34.48561 -32.92680 -31.03956 -30.53984 -30.17882 -27.15480 -24.64048 -22.61352 -21.90575 -21.86422 -21.27276 -20.35205 -18.65515 -16.82824 -16.41172 -15.89341 -15.09001 -15.03834 -14.62135 -14.29785 -13.93937 -13.77152 -13.41583 -13.08350 -12.86432 -12.57063 -12.35959 -12.10046 -11.77010 -11.48035 -11.20632 -11.03995 -10.96403 -10.78105 -10.68610 -10.57037 -10.39105 -10.28495 -10.16170 -9.58734 -9.33040 -8.76292 -8.56415 -8.32355 -8.13094 -7.56999 -6.26585 -3.91727 1.76941 1.83798 3.21985 3.26632 3.31048 3.90697 4.10698 4.25437 4.75756 4.83059 5.07497 5.14149 5.25739 5.32813 5.44819 5.52902 5.54398 5.65375 5.82137 5.85568 5.90792 5.96006 6.05149 6.08992 6.18639 6.27537 6.28794 6.32616 6.44544 6.47549 6.54589 6.67357 6.80883 6.84025 6.91161 6.99044 7.15212 7.22910 7.41797 7.59627 8.23841 8.54986 9.22797 9.44103 10.02886 10.79100 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.022365 B = 0.006099 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.652459 B = 4589.992300 C = 5166.967056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C -0.066 4.066 4 H 0.092 0.908 5 C 0.471 3.529 6 O -0.574 6.574 7 N -0.425 5.425 8 C -0.309 4.309 9 H 0.090 0.910 10 C 0.044 3.956 11 N -0.874 5.874 12 Si 0.918 3.082 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.275 1.275 16 C 0.135 3.865 17 C -0.134 4.134 18 C -0.232 4.232 19 C -0.044 4.044 20 C -0.078 4.078 21 C -0.126 4.126 22 C -0.132 4.132 23 C -0.129 4.129 24 C -0.120 4.120 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.266 0.734 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.633 2.718 3.019 11.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C -0.088 4.088 4 H 0.110 0.890 5 C 0.259 3.741 6 O -0.457 6.457 7 N -0.144 5.144 8 C -0.437 4.437 9 H 0.108 0.892 10 C -0.160 4.160 11 N -0.512 5.512 12 Si 0.745 3.255 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.200 1.200 16 C 0.030 3.970 17 C -0.171 4.171 18 C -0.270 4.270 19 C -0.044 4.044 20 C -0.096 4.096 21 C -0.145 4.145 22 C -0.150 4.150 23 C -0.147 4.147 24 C -0.138 4.138 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.223 2.770 3.274 11.085 hybrid contribution 1.023 -0.187 -0.248 1.069 sum -9.199 2.583 3.025 10.023 Atomic orbital electron populations 1.21765 0.95865 1.01112 1.01634 1.21525 0.95439 0.94651 1.03335 1.20363 0.95467 0.97251 0.95697 0.88956 1.19925 0.88360 0.82996 0.82847 1.90539 1.65476 1.51058 1.38655 1.42982 1.05606 1.57857 1.07958 1.19394 0.80452 1.13113 1.30728 0.89233 1.25326 0.99650 0.95367 0.95687 1.69867 1.35754 1.15660 1.29925 0.86142 0.83306 0.77791 0.78284 1.19938 1.21018 1.20035 1.21142 0.95274 0.93865 0.86749 1.22625 0.96163 1.02182 0.96151 1.23582 0.96121 0.99570 1.07735 1.19502 0.95654 0.94855 0.94421 1.20977 0.97038 0.99932 0.91653 1.21072 0.98845 0.96514 0.98022 1.20995 0.99488 0.97122 0.97432 1.20962 1.01153 0.99932 0.92663 1.20988 0.99017 0.95798 0.97993 0.93020 0.92852 0.92838 0.90243 0.91922 0.92348 0.87690 0.89365 0.89796 0.89597 0.89983 0.86180 0.86682 0.86895 0.86766 0.86647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.72 37.16 0.36 -1.61 16 2 C -0.11 -1.88 5.16 -26.73 -0.14 -2.02 16 3 C -0.07 -1.24 1.66 -92.92 -0.15 -1.39 16 4 H 0.09 1.62 5.72 -51.93 -0.30 1.32 16 5 C 0.47 11.32 6.74 -10.98 -0.07 11.25 16 6 O -0.57 -15.76 14.70 5.55 0.08 -15.68 16 7 N -0.42 -10.57 2.92 -107.73 -0.31 -10.88 16 8 C -0.31 -8.48 8.64 -14.94 -0.13 -8.60 16 9 H 0.09 2.60 7.58 -52.48 -0.40 2.20 16 10 C 0.04 1.14 5.18 -17.47 -0.09 1.05 16 11 N -0.87 -22.45 10.50 55.50 0.58 -21.87 16 12 Si 0.92 20.80 29.56 -169.99 -5.02 15.78 16 13 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 16 C 0.13 2.91 2.52 -67.93 -0.17 2.74 16 17 C -0.13 -2.73 8.71 -26.73 -0.23 -2.96 16 18 C -0.23 -4.15 8.58 -26.73 -0.23 -4.38 16 19 C -0.04 -0.79 3.42 -104.62 -0.36 -1.14 16 20 C -0.08 -1.40 7.81 -39.58 -0.31 -1.71 16 21 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 22 C -0.13 -1.86 10.05 -39.58 -0.40 -2.25 16 23 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 24 C -0.12 -1.88 9.67 -39.58 -0.38 -2.27 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.72 7.36 -51.93 -0.38 0.34 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.08 1.42 5.42 -51.93 -0.28 1.14 16 29 H 0.06 1.10 7.22 -51.93 -0.38 0.72 16 30 H 0.27 6.59 8.32 -40.82 -0.34 6.25 16 31 H 0.11 2.31 6.51 -51.93 -0.34 1.98 16 32 H 0.09 1.97 7.98 -51.93 -0.41 1.55 16 33 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.50 7.86 -51.93 -0.41 1.09 16 36 H 0.12 2.30 7.33 -52.49 -0.38 1.92 16 37 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 39 H 0.11 1.29 8.06 -52.48 -0.42 0.87 16 40 H 0.12 1.60 7.95 -52.48 -0.42 1.18 16 LS Contribution 322.92 15.07 4.87 4.87 Total: -1.00 -29.58 322.92 -8.70 -38.28 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -5.79 Total: 7.39 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -3.10 Total: -17.88 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: 0.27 Total: -32.75 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: 0.08 Total: -15.68 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.58 -8.70 -38.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299300086.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.525 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.35 seconds