Wall clock time and date at job start Mon Mar 30 2020 02:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47425 * 2 1 4 4 H 1.08996 * 109.46845 * 304.29634 * 3 2 1 5 5 C 1.50699 * 109.47039 * 64.29396 * 3 2 1 6 6 O 1.21301 * 120.00018 * 59.75893 * 5 3 2 7 7 N 1.34774 * 120.00130 * 239.75955 * 5 3 2 8 8 C 1.37097 * 119.99941 * 175.06505 * 7 5 3 9 9 H 1.08001 * 120.00247 * 20.05858 * 8 7 5 10 10 C 1.38958 * 119.99966 * 200.05431 * 8 7 5 11 11 N 1.31410 * 119.99738 * 10.66872 * 10 8 7 12 12 Si 1.86796 * 120.00248 * 190.66627 * 10 8 7 13 13 H 1.48500 * 109.47183 * 59.99767 * 12 10 8 14 14 H 1.48498 * 109.47515 * 180.02562 * 12 10 8 15 15 H 1.48508 * 109.47124 * 300.00459 * 12 10 8 16 16 C 1.46502 * 119.99890 * 355.06533 * 7 5 3 17 17 C 1.53003 * 117.49734 * 309.96303 * 16 7 5 18 18 C 1.53000 * 117.49395 * 241.34226 * 16 7 5 19 19 C 1.50698 * 109.47505 * 184.29393 * 3 2 1 20 20 C 1.38236 * 120.00226 * 119.99658 * 19 3 2 21 21 C 1.38226 * 120.00291 * 179.97438 * 20 19 3 22 22 C 1.38243 * 120.00160 * 359.97438 * 21 20 19 23 23 C 1.38239 * 119.99652 * 0.07142 * 22 21 20 24 24 C 1.38227 * 119.99945 * 359.88480 * 23 22 21 25 25 H 1.09003 * 109.46598 * 303.27170 * 1 2 3 26 26 H 1.08999 * 109.47012 * 63.26811 * 1 2 3 27 27 H 1.09000 * 109.46890 * 183.27312 * 1 2 3 28 28 H 1.09003 * 109.47153 * 240.00027 * 2 1 3 29 29 H 1.09000 * 109.47612 * 119.99732 * 2 1 3 30 30 H 0.96996 * 119.99827 * 184.93624 * 11 10 8 31 31 H 1.08998 * 115.54880 * 95.67472 * 16 7 5 32 32 H 1.09002 * 117.49990 * 0.02562 * 17 16 7 33 33 H 1.08996 * 117.49562 * 145.02365 * 17 16 7 34 34 H 1.09008 * 117.49513 * 214.97518 * 18 16 7 35 35 H 1.08997 * 117.50346 * 359.97438 * 18 16 7 36 36 H 1.08009 * 119.99827 * 359.97438 * 20 19 3 37 37 H 1.07999 * 120.00122 * 179.72976 * 21 20 19 38 38 H 1.07998 * 119.99991 * 179.97438 * 22 21 20 39 39 H 1.07999 * 119.99366 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.00289 * 180.11095 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6153 1.9780 -0.8490 5 6 1.6265 2.1215 1.2802 6 8 1.9926 1.6774 2.3480 7 7 0.8499 3.2222 1.2388 8 6 0.3901 3.7810 2.4032 9 1 0.8851 3.5644 3.3384 10 6 -0.7127 4.6261 2.3803 11 7 -1.4408 4.7267 1.2910 12 14 -1.1602 5.6191 3.8978 13 1 -0.0300 6.5137 4.2551 14 1 -2.3685 6.4353 3.6168 15 1 -1.4381 4.6972 5.0285 16 6 0.4970 3.8216 -0.0506 17 6 1.6339 4.0947 -1.0375 18 6 0.9555 5.2579 -0.3110 19 6 3.5433 1.4439 -0.1064 20 6 4.1601 2.0687 -1.1741 21 6 5.5389 2.0704 -1.2714 22 6 6.3012 1.4477 -0.3007 23 6 5.6843 0.8220 0.7666 24 6 4.3055 0.8211 0.8643 25 1 -0.3632 0.5638 0.8593 26 1 -0.3633 0.4623 -0.9178 27 1 -0.3633 -1.0260 0.0587 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 -2.1667 5.3687 1.2505 31 1 -0.4654 3.5179 -0.4625 32 1 2.6443 3.8280 -0.7276 33 1 1.4195 3.9706 -2.0989 34 1 0.2948 5.8990 -0.8947 35 1 1.5192 5.7570 0.4771 36 1 3.5646 2.5555 -1.9323 37 1 6.0207 2.5548 -2.1079 38 1 7.3785 1.4487 -0.3769 39 1 6.2798 0.3352 1.5247 40 1 3.8236 0.3339 1.6990 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299300090.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:18 Heat of formation + Delta-G solvation = 19.209436 kcal Electronic energy + Delta-G solvation = -21897.882365 eV Core-core repulsion = 18871.553058 eV Total energy + Delta-G solvation = -3026.329306 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = -0.80 seconds Orbital eigenvalues (eV) -39.81555 -38.17770 -36.16284 -34.29139 -32.92307 -31.00761 -30.74947 -30.46155 -26.77739 -24.79576 -22.76979 -21.84836 -21.71037 -21.35333 -20.66242 -18.31756 -16.98322 -16.40864 -16.03290 -15.21097 -14.95032 -14.53831 -14.11170 -13.97046 -13.80207 -13.51405 -13.11096 -12.90219 -12.46298 -12.27534 -12.10758 -11.75520 -11.46312 -11.18375 -11.05442 -10.92506 -10.74846 -10.59036 -10.51658 -10.35668 -10.29604 -10.25594 -9.77450 -9.31510 -8.84706 -8.58081 -8.51752 -8.05215 -7.69460 -6.23901 -3.83466 1.68366 1.76281 3.20700 3.26358 3.30408 3.86517 4.10124 4.20901 4.69366 4.78157 5.11524 5.12783 5.24341 5.28951 5.47269 5.50720 5.58379 5.77513 5.80661 5.80830 5.88881 5.95316 6.08731 6.14667 6.23051 6.26450 6.31093 6.32667 6.44408 6.47580 6.65370 6.71732 6.77653 6.82203 6.86770 6.92970 7.09648 7.26768 7.36397 7.60070 8.13593 8.52507 9.22166 9.46768 10.01731 10.77962 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.020879 B = 0.006307 C = 0.006165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.763855 B = 4438.252866 C = 4540.697637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.099 4.099 3 C -0.074 4.074 4 H 0.098 0.902 5 C 0.470 3.530 6 O -0.584 6.584 7 N -0.421 5.421 8 C -0.307 4.307 9 H 0.098 0.902 10 C 0.038 3.962 11 N -0.874 5.874 12 Si 0.920 3.080 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.274 1.274 16 C 0.141 3.859 17 C -0.235 4.235 18 C -0.153 4.153 19 C -0.059 4.059 20 C -0.120 4.120 21 C -0.128 4.128 22 C -0.131 4.131 23 C -0.127 4.127 24 C -0.094 4.094 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.266 0.734 31 H 0.116 0.884 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.237 -4.093 -7.772 11.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.137 4.137 3 C -0.096 4.096 4 H 0.116 0.884 5 C 0.258 3.742 6 O -0.469 6.469 7 N -0.139 5.139 8 C -0.435 4.435 9 H 0.116 0.884 10 C -0.166 4.166 11 N -0.513 5.513 12 Si 0.747 3.253 13 H -0.201 1.201 14 H -0.210 1.210 15 H -0.199 1.199 16 C 0.035 3.965 17 C -0.273 4.273 18 C -0.191 4.191 19 C -0.060 4.060 20 C -0.138 4.138 21 C -0.146 4.146 22 C -0.149 4.149 23 C -0.145 4.145 24 C -0.112 4.112 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.133 0.867 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.140 0.860 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.162 -4.221 -7.258 11.036 hybrid contribution -0.325 0.883 0.601 1.117 sum 6.837 -3.338 -6.657 10.110 Atomic orbital electron populations 1.21773 0.95391 1.01108 1.02644 1.21374 0.96137 0.94305 1.01894 1.20509 0.91697 0.97831 0.99515 0.88352 1.19671 0.83403 0.81640 0.89463 1.90483 1.58902 1.66068 1.31417 1.43124 1.43627 1.22249 1.04914 1.19585 1.10208 1.26566 0.87105 0.88406 1.25179 0.94606 0.98721 0.98095 1.69898 1.18864 1.34692 1.27857 0.86106 0.77758 0.79690 0.81794 1.20143 1.20998 1.19914 1.21146 0.94357 0.96139 0.84839 1.23813 0.99065 1.06672 0.97704 1.22793 1.02347 0.92345 1.01622 1.19680 0.94685 0.97074 0.94560 1.21142 0.94653 0.99702 0.98269 1.21015 0.93896 1.00518 0.99183 1.21049 0.99262 0.99300 0.95329 1.21127 0.94850 1.00340 0.98141 1.21283 0.93342 0.98291 0.98254 0.91651 0.92907 0.93191 0.92140 0.91319 0.92365 0.86692 0.88844 0.89313 0.89669 0.89629 0.85956 0.86580 0.86789 0.86567 0.84923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.77 37.16 0.36 -2.20 16 2 C -0.10 -1.68 5.11 -26.73 -0.14 -1.82 16 3 C -0.07 -1.40 1.45 -92.92 -0.13 -1.53 16 4 H 0.10 1.76 4.51 -51.93 -0.23 1.53 16 5 C 0.47 11.22 5.09 -10.99 -0.06 11.16 16 6 O -0.58 -15.74 14.72 5.54 0.08 -15.66 16 7 N -0.42 -10.55 2.94 -107.72 -0.32 -10.87 16 8 C -0.31 -8.46 9.23 -14.93 -0.14 -8.60 16 9 H 0.10 2.86 7.33 -52.49 -0.38 2.47 16 10 C 0.04 0.98 5.07 -17.47 -0.09 0.89 16 11 N -0.87 -22.52 10.38 55.50 0.58 -21.95 16 12 Si 0.92 20.81 29.57 -169.99 -5.03 15.78 16 13 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 14 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 15 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 16 C 0.14 3.08 3.31 -67.93 -0.22 2.86 16 17 C -0.23 -4.21 7.27 -26.73 -0.19 -4.40 16 18 C -0.15 -3.12 9.36 -26.73 -0.25 -3.37 16 19 C -0.06 -1.05 4.51 -104.62 -0.47 -1.52 16 20 C -0.12 -1.84 8.20 -39.59 -0.32 -2.17 16 21 C -0.13 -1.76 10.05 -39.58 -0.40 -2.16 16 22 C -0.13 -1.79 10.05 -39.58 -0.40 -2.19 16 23 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 24 C -0.09 -1.66 8.51 -39.58 -0.34 -2.00 16 25 H 0.06 1.34 7.25 -51.93 -0.38 0.96 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.07 1.23 7.39 -51.93 -0.38 0.85 16 30 H 0.27 6.58 8.32 -40.82 -0.34 6.24 16 31 H 0.12 2.65 7.54 -51.93 -0.39 2.26 16 32 H 0.09 1.72 4.88 -51.93 -0.25 1.46 16 33 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.08 1.62 8.14 -51.92 -0.42 1.20 16 35 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 36 H 0.12 1.69 6.73 -52.48 -0.35 1.34 16 37 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 40 H 0.13 2.54 6.57 -52.49 -0.34 2.19 16 LS Contribution 319.50 15.07 4.81 4.81 Total: -1.00 -29.33 319.50 -8.72 -38.05 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -5.66 Total: 9.20 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -3.19 Total: -19.37 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 0.26 Total: -32.82 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.08 Total: -15.66 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.33 -8.72 -38.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299300090.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.261 kcal (2) G-P(sol) polarization free energy of solvation -29.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.80 seconds