Wall clock time and date at job start Mon Mar 30 2020 02:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47425 * 2 1 4 4 H 1.08996 * 109.46845 * 304.29634 * 3 2 1 5 5 C 1.50699 * 109.47039 * 64.29396 * 3 2 1 6 6 O 1.21301 * 120.00018 * 59.75893 * 5 3 2 7 7 N 1.34774 * 120.00130 * 239.75955 * 5 3 2 8 8 C 1.37097 * 119.99941 * 175.06505 * 7 5 3 9 9 H 1.08001 * 120.00247 * 20.05858 * 8 7 5 10 10 C 1.38958 * 119.99966 * 200.05431 * 8 7 5 11 11 N 1.31410 * 119.99738 * 10.66872 * 10 8 7 12 12 Si 1.86796 * 120.00248 * 190.66627 * 10 8 7 13 13 H 1.48500 * 109.47183 * 59.99767 * 12 10 8 14 14 H 1.48498 * 109.47515 * 180.02562 * 12 10 8 15 15 H 1.48508 * 109.47124 * 300.00459 * 12 10 8 16 16 C 1.46502 * 119.99890 * 355.06533 * 7 5 3 17 17 C 1.53003 * 117.49734 * 309.96303 * 16 7 5 18 18 C 1.53000 * 117.49395 * 241.34226 * 16 7 5 19 19 C 1.50698 * 109.47505 * 184.29393 * 3 2 1 20 20 C 1.38236 * 120.00226 * 119.99658 * 19 3 2 21 21 C 1.38226 * 120.00291 * 179.97438 * 20 19 3 22 22 C 1.38243 * 120.00160 * 359.97438 * 21 20 19 23 23 C 1.38239 * 119.99652 * 0.07142 * 22 21 20 24 24 C 1.38227 * 119.99945 * 359.88480 * 23 22 21 25 25 H 1.09003 * 109.46598 * 303.27170 * 1 2 3 26 26 H 1.08999 * 109.47012 * 63.26811 * 1 2 3 27 27 H 1.09000 * 109.46890 * 183.27312 * 1 2 3 28 28 H 1.09003 * 109.47153 * 240.00027 * 2 1 3 29 29 H 1.09000 * 109.47612 * 119.99732 * 2 1 3 30 30 H 0.96996 * 119.99827 * 184.93624 * 11 10 8 31 31 H 1.08998 * 115.54880 * 95.67472 * 16 7 5 32 32 H 1.09002 * 117.49990 * 0.02562 * 17 16 7 33 33 H 1.08996 * 117.49562 * 145.02365 * 17 16 7 34 34 H 1.09008 * 117.49513 * 214.97518 * 18 16 7 35 35 H 1.08997 * 117.50346 * 359.97438 * 18 16 7 36 36 H 1.08009 * 119.99827 * 359.97438 * 20 19 3 37 37 H 1.07999 * 120.00122 * 179.72976 * 21 20 19 38 38 H 1.07998 * 119.99991 * 179.97438 * 22 21 20 39 39 H 1.07999 * 119.99366 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.00289 * 180.11095 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6153 1.9780 -0.8490 5 6 1.6265 2.1215 1.2802 6 8 1.9926 1.6774 2.3480 7 7 0.8499 3.2222 1.2388 8 6 0.3901 3.7810 2.4032 9 1 0.8851 3.5644 3.3384 10 6 -0.7127 4.6261 2.3803 11 7 -1.4408 4.7267 1.2910 12 14 -1.1602 5.6191 3.8978 13 1 -0.0300 6.5137 4.2551 14 1 -2.3685 6.4353 3.6168 15 1 -1.4381 4.6972 5.0285 16 6 0.4970 3.8216 -0.0506 17 6 1.6339 4.0947 -1.0375 18 6 0.9555 5.2579 -0.3110 19 6 3.5433 1.4439 -0.1064 20 6 4.1601 2.0687 -1.1741 21 6 5.5389 2.0704 -1.2714 22 6 6.3012 1.4477 -0.3007 23 6 5.6843 0.8220 0.7666 24 6 4.3055 0.8211 0.8643 25 1 -0.3632 0.5638 0.8593 26 1 -0.3633 0.4623 -0.9178 27 1 -0.3633 -1.0260 0.0587 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 -2.1667 5.3687 1.2505 31 1 -0.4654 3.5179 -0.4625 32 1 2.6443 3.8280 -0.7276 33 1 1.4195 3.9706 -2.0989 34 1 0.2948 5.8990 -0.8947 35 1 1.5192 5.7570 0.4771 36 1 3.5646 2.5555 -1.9323 37 1 6.0207 2.5548 -2.1079 38 1 7.3785 1.4487 -0.3769 39 1 6.2798 0.3352 1.5247 40 1 3.8236 0.3339 1.6990 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299300090.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:14 Heat of formation + Delta-G solvation = 4.067744 kcal Electronic energy + Delta-G solvation = -21898.538958 eV Core-core repulsion = 18871.553058 eV Total energy + Delta-G solvation = -3026.985899 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.37321 -39.59235 -37.90878 -35.82238 -34.77197 -32.93715 -31.99038 -31.65040 -28.33332 -26.60326 -24.16063 -23.38861 -23.00668 -22.90638 -22.16797 -19.97036 -18.84625 -17.83343 -17.55842 -16.96245 -16.44806 -16.05517 -15.73096 -15.51205 -15.27139 -15.04194 -14.46184 -14.24938 -14.02643 -13.88377 -13.48812 -13.33855 -12.98942 -12.92647 -12.72946 -12.41011 -12.26733 -12.22737 -12.14374 -11.90720 -11.84892 -11.64487 -11.47334 -10.96371 -10.66184 -10.19082 -9.72449 -9.65027 -9.47065 -8.22742 -5.90672 0.49870 0.58974 1.36505 1.38504 1.47376 2.07468 2.27516 2.89760 3.01262 3.13312 3.21384 3.79153 3.88571 4.09982 4.19035 4.23542 4.30389 4.32121 4.36190 4.40406 4.51877 4.61570 4.66247 4.76163 4.82060 4.85820 4.93468 5.03298 5.10792 5.20333 5.23640 5.28914 5.38535 5.38746 5.46800 5.54487 5.64551 5.69469 5.85041 6.10994 6.21853 6.57398 7.23280 7.55466 8.11680 8.75770 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.020879 B = 0.006307 C = 0.006165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.763855 B = 4438.252866 C = 4540.697637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.060 4.060 4 H 0.111 0.889 5 C 0.462 3.538 6 O -0.630 6.630 7 N -0.434 5.434 8 C -0.346 4.346 9 H 0.063 0.937 10 C 0.012 3.988 11 N -0.878 5.878 12 Si 0.973 3.027 13 H -0.275 1.275 14 H -0.267 1.267 15 H -0.280 1.280 16 C 0.115 3.885 17 C -0.191 4.191 18 C -0.159 4.159 19 C -0.083 4.083 20 C -0.123 4.123 21 C -0.123 4.123 22 C -0.125 4.125 23 C -0.134 4.134 24 C -0.121 4.121 25 H 0.018 0.982 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.048 0.952 30 H 0.271 0.729 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.132 0.868 34 H 0.099 0.901 35 H 0.061 0.939 36 H 0.142 0.858 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.132 0.868 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.527 -3.504 -10.718 14.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.135 4.135 3 C -0.082 4.082 4 H 0.129 0.871 5 C 0.252 3.748 6 O -0.517 6.517 7 N -0.151 5.151 8 C -0.473 4.473 9 H 0.081 0.919 10 C -0.191 4.191 11 N -0.516 5.516 12 Si 0.798 3.202 13 H -0.200 1.200 14 H -0.192 1.192 15 H -0.206 1.206 16 C 0.010 3.990 17 C -0.229 4.229 18 C -0.196 4.196 19 C -0.084 4.084 20 C -0.141 4.141 21 C -0.141 4.141 22 C -0.143 4.143 23 C -0.152 4.152 24 C -0.139 4.139 25 H 0.037 0.963 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.113 0.887 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.110 0.890 33 H 0.150 0.850 34 H 0.118 0.882 35 H 0.079 0.921 36 H 0.160 0.840 37 H 0.171 0.829 38 H 0.167 0.833 39 H 0.150 0.850 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.441 -3.624 -10.238 13.755 hybrid contribution -0.678 0.661 1.533 1.802 sum 7.763 -2.962 -8.705 12.034 Atomic orbital electron populations 1.21728 0.95437 1.01954 1.01218 1.21399 0.96000 0.93500 1.02557 1.20412 0.93155 0.98084 0.96516 0.87128 1.20640 0.82205 0.81068 0.90891 1.90439 1.60407 1.67145 1.33749 1.43304 1.43632 1.22840 1.05362 1.19443 1.11600 1.28870 0.87428 0.91867 1.25752 0.93952 0.98786 1.00630 1.69968 1.18536 1.34459 1.28623 0.85312 0.77921 0.78312 0.78677 1.20036 1.19173 1.20625 1.21095 0.95777 0.97450 0.84695 1.23876 0.97397 1.02673 0.98919 1.22755 1.02923 0.92141 1.01822 1.19666 0.93672 0.98964 0.96066 1.21377 0.95840 0.99097 0.97741 1.21469 0.93227 0.99467 0.99908 1.21479 1.01123 0.97594 0.94108 1.21369 0.93810 1.00609 0.99377 1.21199 0.94849 0.99760 0.98070 0.96298 0.91322 0.90851 0.88680 0.93293 0.91902 0.88051 0.88957 0.84961 0.88221 0.92059 0.84011 0.82945 0.83333 0.84983 0.88033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.96 9.77 71.98 0.70 -4.26 16 2 C -0.10 -3.29 5.11 30.59 0.16 -3.13 16 3 C -0.06 -2.29 1.45 -12.29 -0.02 -2.30 16 4 H 0.11 3.79 4.51 -2.39 -0.01 3.78 16 5 C 0.46 23.14 5.09 87.66 0.45 23.58 16 6 O -0.63 -36.56 14.72 -3.09 -0.05 -36.60 16 7 N -0.43 -22.66 2.94 -613.11 -1.80 -24.46 16 8 C -0.35 -20.11 9.23 84.04 0.78 -19.33 16 9 H 0.06 4.01 7.33 -2.91 -0.02 3.98 16 10 C 0.01 0.64 5.07 84.93 0.43 1.07 16 11 N -0.88 -45.65 10.38 21.67 0.22 -45.42 16 12 Si 0.97 43.55 29.57 68.60 2.03 45.58 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 14 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 15 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 16 C 0.11 5.02 3.31 44.99 0.15 5.17 16 17 C -0.19 -6.38 7.27 30.60 0.22 -6.16 16 18 C -0.16 -6.33 9.36 30.60 0.29 -6.05 16 19 C -0.08 -2.88 4.51 -19.86 -0.09 -2.97 16 20 C -0.12 -3.39 8.20 22.27 0.18 -3.21 16 21 C -0.12 -2.85 10.05 22.27 0.22 -2.63 16 22 C -0.13 -2.97 10.05 22.27 0.22 -2.74 16 23 C -0.13 -3.87 10.05 22.27 0.22 -3.65 16 24 C -0.12 -4.35 8.51 22.27 0.19 -4.16 16 25 H 0.02 0.78 7.25 -2.39 -0.02 0.77 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.05 1.84 7.39 -2.39 -0.02 1.83 16 30 H 0.27 13.29 8.32 -92.71 -0.77 12.52 16 31 H 0.10 4.68 7.54 -2.39 -0.02 4.67 16 32 H 0.09 3.16 4.88 -2.39 -0.01 3.15 16 33 H 0.13 3.31 8.14 -2.39 -0.02 3.29 16 34 H 0.10 3.63 8.14 -2.38 -0.02 3.61 16 35 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.14 3.28 6.73 -2.91 -0.02 3.26 16 37 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 38 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 39 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16 40 H 0.10 4.21 6.57 -2.91 -0.02 4.20 16 Total: -1.00 -68.68 319.50 5.54 -63.14 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 1.03 Total: 28.55 kcal Atomic # 6 Polarization: -34.88 SS G_CDS: 4.11 Total: -30.77 kcal Atomic # 7 Polarization: -68.31 SS G_CDS: -1.58 Total: -69.89 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -0.05 Total: -36.60 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -68.68 5.54 -63.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299300090.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.203 kcal (2) G-P(sol) polarization free energy of solvation -68.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds