Wall clock time and date at job start Mon Mar 30 2020 01:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46826 * 2 1 4 4 C 1.53007 * 109.46941 * 185.11369 * 3 2 1 5 5 C 1.50696 * 115.54907 * 293.87461 * 4 3 2 6 6 O 1.21280 * 119.99784 * 122.53691 * 5 4 3 7 7 N 1.34768 * 120.00274 * 302.53545 * 5 4 3 8 8 C 1.39239 * 120.00219 * 184.92100 * 7 5 4 9 9 C 1.39484 * 119.83563 * 146.52879 * 8 7 5 10 10 C 1.36367 * 120.17339 * 180.02562 * 9 8 7 11 11 C 1.40867 * 119.82648 * 0.23149 * 10 9 8 12 12 C 1.41155 * 120.16461 * 179.72479 * 11 10 9 13 13 H 1.08003 * 120.00135 * 125.16297 * 12 11 10 14 14 C 1.39896 * 120.00308 * 305.15933 * 12 11 10 15 15 N 1.30868 * 120.00653 * 154.27844 * 14 12 11 16 16 Si 1.86805 * 120.00050 * 334.28215 * 14 12 11 17 17 H 1.48504 * 109.47276 * 86.59593 * 16 14 12 18 18 H 1.48497 * 109.47305 * 206.59872 * 16 14 12 19 19 H 1.48499 * 109.46802 * 326.59885 * 16 14 12 20 20 C 1.40873 * 119.67470 * 359.49921 * 11 10 9 21 21 C 1.36380 * 119.82322 * 0.50084 * 20 11 10 22 22 C 1.53001 * 117.49734 * 79.54624 * 4 3 2 23 23 C 1.52997 * 117.49724 * 148.20059 * 4 3 2 24 24 H 1.08997 * 109.47072 * 60.00216 * 1 2 3 25 25 H 1.09002 * 109.46914 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47076 * 300.00153 * 1 2 3 27 27 H 1.09000 * 109.47504 * 239.99912 * 2 1 3 28 28 H 1.09003 * 109.47107 * 119.99356 * 2 1 3 29 29 H 1.08994 * 109.47305 * 65.11207 * 3 2 1 30 30 H 1.08996 * 109.46694 * 305.11053 * 3 2 1 31 31 H 0.97004 * 119.99864 * 4.91979 * 7 5 4 32 32 H 1.08005 * 119.91190 * 0.02562 * 9 8 7 33 33 H 1.08001 * 120.08914 * 179.97438 * 10 9 8 34 34 H 0.96998 * 120.00755 * 180.02562 * 15 14 12 35 35 H 1.07992 * 120.09126 * 180.22428 * 20 11 10 36 36 H 1.07997 * 119.91479 * 179.75082 * 21 20 11 37 37 H 1.09002 * 117.49972 * 215.00109 * 22 4 3 38 38 H 1.09004 * 117.49849 * 0.02562 * 22 4 3 39 39 H 1.09003 * 117.49852 * 359.97438 * 23 4 3 40 40 H 1.08999 * 117.49382 * 144.97128 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5646 1.4445 -0.1286 5 6 4.3160 0.8584 1.0388 6 8 5.0766 -0.0704 0.8657 7 7 4.1430 1.3662 2.2751 8 6 4.9119 0.8941 3.3356 9 6 5.2845 1.7612 4.3626 10 6 6.0379 1.3063 5.4043 11 6 6.4440 -0.0421 5.4389 12 6 7.2289 -0.5192 6.5107 13 1 6.8992 -1.3738 7.0829 14 6 8.4338 0.1149 6.8319 15 7 8.9057 0.0448 8.0505 16 14 9.3693 1.0619 5.5213 17 1 8.8575 2.4544 5.4566 18 1 10.8147 1.0810 5.8612 19 1 9.1792 0.4030 4.2041 20 6 6.0591 -0.9133 4.4009 21 6 5.3055 -0.4437 3.3657 22 6 4.1561 1.2389 -1.5246 23 6 4.2098 2.6196 -0.8660 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8901 29 1 1.7533 1.9293 0.9322 30 1 1.6037 1.9820 -0.8407 31 1 3.4828 2.0606 2.4261 32 1 4.9754 2.7957 4.3328 33 1 6.3259 1.9790 6.1986 34 1 9.7410 0.4848 8.2733 35 1 6.3636 -1.9491 4.4225 36 1 5.0129 -1.1093 2.5672 37 1 5.0888 0.6797 -1.5987 38 1 3.4590 1.1027 -2.3515 39 1 3.5481 3.3910 -1.2599 40 1 5.1777 2.9690 -0.5064 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310941517.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:09 Heat of formation + Delta-G solvation = -4.071263 kcal Electronic energy + Delta-G solvation = -20558.879375 eV Core-core repulsion = 17531.540541 eV Total energy + Delta-G solvation = -3027.338833 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.35260 -38.15209 -36.71037 -34.52563 -33.90775 -32.90946 -29.91580 -29.60717 -27.70411 -25.28210 -23.09835 -22.72988 -21.82974 -21.47161 -20.50397 -19.05436 -17.43929 -17.13026 -16.46499 -15.39542 -15.32281 -15.06928 -14.49082 -14.21973 -13.77991 -13.59245 -13.20728 -13.02103 -12.80912 -12.44658 -12.37384 -12.34278 -11.83503 -11.81043 -11.68266 -11.46412 -11.14053 -10.96241 -10.90737 -10.51769 -10.36299 -10.20368 -10.06793 -9.75943 -9.47023 -9.23183 -8.73514 -7.88768 -6.95647 -6.70472 -4.32822 2.25267 2.68027 2.93339 3.22223 3.24070 3.38406 3.40170 3.67660 4.15543 4.38461 4.60047 4.63156 4.72848 4.83515 4.95868 5.07340 5.19751 5.26296 5.44835 5.48049 5.55702 5.66077 5.69942 5.77230 5.88416 5.92674 6.01718 6.03962 6.12311 6.16841 6.44981 6.64556 6.73369 6.87658 7.24591 7.35705 7.44332 7.57884 7.93279 8.01084 8.13923 8.50037 8.58363 8.77949 8.99322 10.34321 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.029424 B = 0.004315 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.386923 B = 6488.157410 C = 6895.522334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.075 4.075 4 C -0.158 4.158 5 C 0.540 3.460 6 O -0.525 6.525 7 N -0.651 5.651 8 C 0.029 3.971 9 C -0.116 4.116 10 C -0.175 4.175 11 C 0.088 3.912 12 C -0.498 4.498 13 H 0.091 0.909 14 C 0.098 3.902 15 N -0.825 5.825 16 Si 0.880 3.120 17 H -0.264 1.264 18 H -0.283 1.283 19 H -0.254 1.254 20 C -0.172 4.172 21 C -0.093 4.093 22 C -0.144 4.144 23 C -0.158 4.158 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.399 0.601 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.278 0.722 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.682 6.041 -15.715 21.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.113 4.113 4 C -0.161 4.161 5 C 0.326 3.674 6 O -0.401 6.401 7 N -0.293 5.293 8 C -0.063 4.063 9 C -0.136 4.136 10 C -0.195 4.195 11 C 0.086 3.914 12 C -0.529 4.529 13 H 0.108 0.892 14 C -0.117 4.117 15 N -0.453 5.453 16 Si 0.704 3.296 17 H -0.189 1.189 18 H -0.209 1.209 19 H -0.178 1.178 20 C -0.191 4.191 21 C -0.113 4.113 22 C -0.181 4.181 23 C -0.196 4.196 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.233 0.767 32 H 0.117 0.883 33 H 0.126 0.874 34 H 0.089 0.911 35 H 0.125 0.875 36 H 0.135 0.865 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.948 5.412 -15.654 20.423 hybrid contribution 0.270 0.867 -0.312 0.960 sum -11.678 6.279 -15.966 20.754 Atomic orbital electron populations 1.21764 0.95694 1.01749 1.01603 1.21507 0.95620 0.96329 1.02835 1.21128 0.89945 0.97686 1.02533 1.21520 0.95721 1.05446 0.93460 1.19459 0.81829 0.83230 0.82872 1.90680 1.37395 1.27596 1.84443 1.42965 1.38850 1.40606 1.06895 1.17391 1.04493 0.93415 0.90992 1.20289 1.00789 0.96925 0.95630 1.21127 1.01741 0.97794 0.98854 1.17832 0.91377 0.90959 0.91247 1.18998 1.05213 1.15779 1.12862 0.89152 1.25713 0.97757 0.93495 0.94743 1.69811 1.19820 1.37292 1.18328 0.86692 0.78350 0.81126 0.83430 1.18934 1.20859 1.17761 1.21234 1.03487 1.00280 0.94143 1.20704 0.98835 0.93354 0.98399 1.22975 1.03203 0.98784 0.93154 1.23086 1.02403 0.91503 1.02577 0.92881 0.92668 0.92700 0.91634 0.91759 0.91269 0.90990 0.76726 0.88281 0.87413 0.91147 0.87474 0.86450 0.87701 0.88115 0.87952 0.88386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.13 -1.24 5.75 -26.73 -0.15 -1.40 16 3 C -0.08 -0.69 5.05 -26.73 -0.14 -0.82 16 4 C -0.16 -1.83 1.90 -155.66 -0.30 -2.12 16 5 C 0.54 8.78 6.52 -10.99 -0.07 8.71 16 6 O -0.53 -10.73 13.80 5.56 0.08 -10.66 16 7 N -0.65 -10.51 5.30 -9.74 -0.05 -10.56 16 8 C 0.03 0.60 6.34 -83.57 -0.53 0.07 16 9 C -0.12 -2.39 9.89 -39.79 -0.39 -2.79 16 10 C -0.18 -4.13 8.07 -39.26 -0.32 -4.45 16 11 C 0.09 2.26 4.26 -106.80 -0.45 1.80 16 12 C -0.50 -13.82 9.32 -37.85 -0.35 -14.17 16 13 H 0.09 2.65 8.06 -52.48 -0.42 2.22 16 14 C 0.10 2.67 5.36 -17.34 -0.09 2.58 16 15 N -0.83 -22.93 13.93 55.54 0.77 -22.16 16 16 Si 0.88 21.23 27.06 -169.99 -4.60 16.63 16 17 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.25 -6.37 7.11 56.52 0.40 -5.97 16 20 C -0.17 -4.15 9.74 -39.26 -0.38 -4.53 16 21 C -0.09 -2.09 8.63 -39.79 -0.34 -2.44 16 22 C -0.14 -1.52 9.76 -26.70 -0.26 -1.78 16 23 C -0.16 -1.55 9.92 -26.70 -0.26 -1.81 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.78 7.89 -51.93 -0.41 0.37 16 29 H 0.07 0.59 7.73 -51.93 -0.40 0.18 16 30 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.40 5.03 8.37 -40.82 -0.34 4.69 16 32 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 33 H 0.11 2.52 8.05 -52.49 -0.42 2.10 16 34 H 0.28 7.07 8.30 -40.82 -0.34 6.73 16 35 H 0.11 2.49 8.06 -52.49 -0.42 2.06 16 36 H 0.12 2.62 6.06 -52.49 -0.32 2.30 16 37 H 0.10 1.30 7.86 -51.93 -0.41 0.90 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 335.35 15.07 5.05 5.05 Total: -1.00 -30.55 335.35 -8.51 -39.06 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.08 Total: 6.62 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: -3.68 Total: -23.99 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.72 Total: -32.72 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.60 Total: 16.63 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.55 -8.51 -39.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310941517.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.988 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds