Wall clock time and date at job start Mon Mar 30 2020 01:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46826 * 2 1 4 4 C 1.53007 * 109.46941 * 185.11369 * 3 2 1 5 5 C 1.50696 * 115.54907 * 293.87461 * 4 3 2 6 6 O 1.21280 * 119.99784 * 122.53691 * 5 4 3 7 7 N 1.34768 * 120.00274 * 302.53545 * 5 4 3 8 8 C 1.39239 * 120.00219 * 184.92100 * 7 5 4 9 9 C 1.39484 * 119.83563 * 146.52879 * 8 7 5 10 10 C 1.36367 * 120.17339 * 180.02562 * 9 8 7 11 11 C 1.40867 * 119.82648 * 0.23149 * 10 9 8 12 12 C 1.41155 * 120.16461 * 179.72479 * 11 10 9 13 13 H 1.08003 * 120.00135 * 125.16297 * 12 11 10 14 14 C 1.39896 * 120.00308 * 305.15933 * 12 11 10 15 15 N 1.30868 * 120.00653 * 154.27844 * 14 12 11 16 16 Si 1.86805 * 120.00050 * 334.28215 * 14 12 11 17 17 H 1.48504 * 109.47276 * 86.59593 * 16 14 12 18 18 H 1.48497 * 109.47305 * 206.59872 * 16 14 12 19 19 H 1.48499 * 109.46802 * 326.59885 * 16 14 12 20 20 C 1.40873 * 119.67470 * 359.49921 * 11 10 9 21 21 C 1.36380 * 119.82322 * 0.50084 * 20 11 10 22 22 C 1.53001 * 117.49734 * 79.54624 * 4 3 2 23 23 C 1.52997 * 117.49724 * 148.20059 * 4 3 2 24 24 H 1.08997 * 109.47072 * 60.00216 * 1 2 3 25 25 H 1.09002 * 109.46914 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47076 * 300.00153 * 1 2 3 27 27 H 1.09000 * 109.47504 * 239.99912 * 2 1 3 28 28 H 1.09003 * 109.47107 * 119.99356 * 2 1 3 29 29 H 1.08994 * 109.47305 * 65.11207 * 3 2 1 30 30 H 1.08996 * 109.46694 * 305.11053 * 3 2 1 31 31 H 0.97004 * 119.99864 * 4.91979 * 7 5 4 32 32 H 1.08005 * 119.91190 * 0.02562 * 9 8 7 33 33 H 1.08001 * 120.08914 * 179.97438 * 10 9 8 34 34 H 0.96998 * 120.00755 * 180.02562 * 15 14 12 35 35 H 1.07992 * 120.09126 * 180.22428 * 20 11 10 36 36 H 1.07997 * 119.91479 * 179.75082 * 21 20 11 37 37 H 1.09002 * 117.49972 * 215.00109 * 22 4 3 38 38 H 1.09004 * 117.49849 * 0.02562 * 22 4 3 39 39 H 1.09003 * 117.49852 * 359.97438 * 23 4 3 40 40 H 1.08999 * 117.49382 * 144.97128 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5646 1.4445 -0.1286 5 6 4.3160 0.8584 1.0388 6 8 5.0766 -0.0704 0.8657 7 7 4.1430 1.3662 2.2751 8 6 4.9119 0.8941 3.3356 9 6 5.2845 1.7612 4.3626 10 6 6.0379 1.3063 5.4043 11 6 6.4440 -0.0421 5.4389 12 6 7.2289 -0.5192 6.5107 13 1 6.8992 -1.3738 7.0829 14 6 8.4338 0.1149 6.8319 15 7 8.9057 0.0448 8.0505 16 14 9.3693 1.0619 5.5213 17 1 8.8575 2.4544 5.4566 18 1 10.8147 1.0810 5.8612 19 1 9.1792 0.4030 4.2041 20 6 6.0591 -0.9133 4.4009 21 6 5.3055 -0.4437 3.3657 22 6 4.1561 1.2389 -1.5246 23 6 4.2098 2.6196 -0.8660 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8901 29 1 1.7533 1.9293 0.9322 30 1 1.6037 1.9820 -0.8407 31 1 3.4828 2.0606 2.4261 32 1 4.9754 2.7957 4.3328 33 1 6.3259 1.9790 6.1986 34 1 9.7410 0.4848 8.2733 35 1 6.3636 -1.9491 4.4225 36 1 5.0129 -1.1093 2.5672 37 1 5.0888 0.6797 -1.5987 38 1 3.4590 1.1027 -2.3515 39 1 3.5481 3.3910 -1.2599 40 1 5.1777 2.9690 -0.5064 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310941517.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:09 Heat of formation + Delta-G solvation = -21.496904 kcal Electronic energy + Delta-G solvation = -20559.635007 eV Core-core repulsion = 17531.540541 eV Total energy + Delta-G solvation = -3028.094466 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.66973 -39.67390 -37.96373 -36.14830 -34.84417 -34.63894 -31.73776 -31.41608 -28.50460 -26.94030 -24.51845 -23.50916 -23.43474 -22.44520 -22.17365 -20.34037 -19.40991 -18.48266 -17.77473 -17.08413 -16.48691 -16.29185 -15.67677 -15.53982 -15.45106 -14.87108 -14.69735 -14.38379 -14.26954 -14.09205 -13.77159 -13.68293 -13.06965 -13.00635 -12.84978 -12.71100 -12.45085 -12.16544 -12.16189 -12.10003 -11.65896 -11.64900 -11.29208 -11.17676 -10.92985 -10.83813 -10.51506 -9.70780 -8.80374 -8.68892 -6.42478 0.52825 0.82290 1.26234 1.31072 1.44601 1.61957 2.15416 2.18289 2.64016 2.76235 3.31422 3.57533 3.73927 3.85391 3.96974 4.21679 4.23491 4.30036 4.34236 4.50391 4.70868 4.73544 4.85176 4.85935 4.87638 4.92037 4.96682 5.00266 5.02588 5.10485 5.22537 5.28974 5.33118 5.42732 5.46471 5.50799 5.64363 5.77255 6.01028 6.28203 6.41569 6.58843 6.77889 6.92786 7.27007 8.36720 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.029424 B = 0.004315 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.386923 B = 6488.157410 C = 6895.522334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C -0.069 4.069 4 C -0.165 4.165 5 C 0.537 3.463 6 O -0.571 6.571 7 N -0.643 5.643 8 C 0.056 3.944 9 C -0.111 4.111 10 C -0.177 4.177 11 C 0.063 3.937 12 C -0.529 4.529 13 H 0.052 0.948 14 C 0.064 3.936 15 N -0.867 5.867 16 Si 0.932 3.068 17 H -0.248 1.248 18 H -0.265 1.265 19 H -0.273 1.273 20 C -0.182 4.182 21 C -0.106 4.106 22 C -0.148 4.148 23 C -0.137 4.137 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.032 0.968 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.421 0.579 32 H 0.146 0.854 33 H 0.109 0.891 34 H 0.286 0.714 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.077 0.923 38 H 0.129 0.871 39 H 0.139 0.861 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.761 9.376 -18.687 25.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C -0.106 4.106 4 C -0.168 4.168 5 C 0.326 3.674 6 O -0.450 6.450 7 N -0.287 5.287 8 C -0.038 4.038 9 C -0.131 4.131 10 C -0.196 4.196 11 C 0.061 3.939 12 C -0.561 4.561 13 H 0.070 0.930 14 C -0.147 4.147 15 N -0.496 5.496 16 Si 0.754 3.246 17 H -0.172 1.172 18 H -0.190 1.190 19 H -0.198 1.198 20 C -0.201 4.201 21 C -0.126 4.126 22 C -0.186 4.186 23 C -0.174 4.174 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.051 0.949 29 H 0.098 0.902 30 H 0.122 0.878 31 H 0.259 0.741 32 H 0.163 0.837 33 H 0.127 0.873 34 H 0.097 0.903 35 H 0.119 0.881 36 H 0.134 0.866 37 H 0.096 0.904 38 H 0.147 0.853 39 H 0.157 0.843 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.065 8.780 -18.633 24.942 hybrid contribution 0.736 -0.218 0.424 0.877 sum -13.329 8.562 -18.209 24.136 Atomic orbital electron populations 1.21735 0.94136 1.01908 1.02656 1.21505 0.96988 0.96916 1.01053 1.21179 0.87747 0.97183 1.04494 1.21482 0.96767 1.07043 0.91542 1.20398 0.81060 0.82195 0.83779 1.90668 1.39496 1.29696 1.85178 1.42947 1.38798 1.40987 1.05982 1.17545 1.02348 0.92440 0.91449 1.20624 0.99269 0.99034 0.94154 1.21218 1.01921 0.96695 0.99799 1.17855 0.92314 0.92458 0.91311 1.18963 1.06937 1.15788 1.14420 0.92997 1.26303 0.97807 0.94439 0.96174 1.69834 1.20868 1.39292 1.19602 0.85898 0.78269 0.80443 0.79992 1.17232 1.19016 1.19751 1.21299 1.03947 1.00143 0.94729 1.20788 0.99289 0.94745 0.97791 1.23062 1.02672 0.99423 0.93422 1.23225 1.02189 0.91507 1.00496 0.91049 0.93097 0.92347 0.92157 0.94934 0.90215 0.87821 0.74095 0.83654 0.87322 0.90330 0.88100 0.86582 0.90393 0.85320 0.84260 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 71.98 0.71 -1.23 16 2 C -0.13 -2.21 5.75 30.60 0.18 -2.04 16 3 C -0.07 -0.95 5.05 30.60 0.15 -0.79 16 4 C -0.17 -3.25 1.90 -52.93 -0.10 -3.35 16 5 C 0.54 16.39 6.52 87.66 0.57 16.97 16 6 O -0.57 -23.19 13.80 -3.03 -0.04 -23.23 16 7 N -0.64 -18.84 5.30 -303.12 -1.61 -20.45 16 8 C 0.06 2.17 6.34 38.56 0.24 2.42 16 9 C -0.11 -4.24 9.89 22.13 0.22 -4.02 16 10 C -0.18 -8.16 8.07 22.48 0.18 -7.98 16 11 C 0.06 3.29 4.26 -21.28 -0.09 3.20 16 12 C -0.53 -31.01 9.32 23.39 0.22 -30.79 16 13 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 14 C 0.06 3.60 5.36 85.24 0.46 4.06 16 15 N -0.87 -49.87 13.93 21.82 0.30 -49.56 16 16 Si 0.93 44.17 27.06 68.60 1.86 46.02 16 17 H -0.25 -11.01 7.11 99.48 0.71 -10.30 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 19 H -0.27 -13.63 7.11 99.48 0.71 -12.92 16 20 C -0.18 -9.07 9.74 22.48 0.22 -8.85 16 21 C -0.11 -4.79 8.63 22.14 0.19 -4.60 16 22 C -0.15 -2.69 9.76 30.62 0.30 -2.39 16 23 C -0.14 -2.07 9.92 30.61 0.30 -1.76 16 24 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.03 0.76 7.89 -2.39 -0.02 0.74 16 29 H 0.08 0.96 7.73 -2.39 -0.02 0.94 16 30 H 0.10 0.87 8.08 -2.39 -0.02 0.85 16 31 H 0.42 8.77 8.37 -92.71 -0.78 7.99 16 32 H 0.15 4.25 8.06 -2.91 -0.02 4.23 16 33 H 0.11 4.97 8.05 -2.91 -0.02 4.95 16 34 H 0.29 14.91 8.30 -92.71 -0.77 14.14 16 35 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16 36 H 0.12 5.28 6.06 -2.91 -0.02 5.26 16 37 H 0.08 1.86 7.86 -2.39 -0.02 1.84 16 38 H 0.13 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -70.53 335.35 4.52 -66.01 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.25 Total: 22.38 kcal Atomic # 6 Polarization: -44.92 SS G_CDS: 3.76 Total: -41.16 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: -1.30 Total: -70.01 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.04 Total: -23.23 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.86 Total: 46.02 kcal Total: -70.53 4.52 -66.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310941517.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.512 kcal (2) G-P(sol) polarization free energy of solvation -70.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds