Wall clock time and date at job start Mon Mar 30 2020 01:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47157 * 2 1 4 4 C 1.50704 * 109.47044 * 240.00270 * 2 1 3 5 5 H 1.07999 * 119.99810 * 239.99668 * 4 2 1 6 6 C 1.37879 * 120.00082 * 59.99904 * 4 2 1 7 7 N 1.31512 * 120.00167 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99811 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47531 * 59.99869 * 8 6 4 10 10 H 1.48500 * 109.46942 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46890 * 299.99632 * 8 6 4 12 12 C 1.53002 * 109.47261 * 120.00098 * 2 1 3 13 13 N 1.46494 * 109.47185 * 300.00178 * 12 2 1 14 14 C 1.34775 * 120.00053 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99788 * 359.97438 * 14 13 12 16 16 C 1.50704 * 120.00100 * 179.97438 * 14 13 12 17 17 H 1.09000 * 113.22580 * 312.47087 * 16 14 13 18 18 C 1.52884 * 113.98872 * 179.97438 * 16 14 13 19 19 C 1.50760 * 89.82787 * 246.08670 * 18 16 14 20 20 C 1.38236 * 149.34400 * 179.97438 * 19 18 16 21 21 C 1.38173 * 120.12862 * 179.97438 * 20 19 18 22 22 C 1.38239 * 119.74550 * 359.97438 * 21 20 19 23 23 C 1.37972 * 120.18117 * 359.97438 * 22 21 20 24 24 C 1.38365 * 90.24726 * 359.96995 * 19 18 16 25 25 H 1.09001 * 109.47100 * 299.99344 * 1 2 3 26 26 H 1.08999 * 109.47474 * 60.00094 * 1 2 3 27 27 H 1.09006 * 109.47121 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46858 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46852 * 300.00287 * 3 2 1 30 30 H 1.09001 * 109.46580 * 60.00337 * 3 2 1 31 31 H 0.96995 * 120.00442 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.47092 * 179.97438 * 12 2 1 33 33 H 1.09006 * 109.46887 * 60.00060 * 12 2 1 34 34 H 0.96998 * 119.99909 * 359.97438 * 13 12 2 35 35 H 1.09002 * 113.16581 * 130.83128 * 18 16 14 36 36 H 1.09001 * 113.16643 * 1.34084 * 18 16 14 37 37 H 1.08001 * 119.93007 * 359.96709 * 20 19 18 38 38 H 1.07997 * 120.12813 * 179.97438 * 21 20 19 39 39 H 1.08006 * 119.91331 * 179.97438 * 22 21 20 40 40 H 1.08004 * 119.84128 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6035 8 14 2.3213 -1.1203 -4.0080 9 1 1.8258 -2.5201 -4.0079 10 1 1.8268 -0.4198 -5.2205 11 1 3.8063 -1.1208 -4.0082 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5750 -1.4770 3.7807 16 6 1.3758 0.2198 4.9000 17 1 1.5170 1.2998 4.8602 18 6 1.8271 -0.4185 6.2139 19 6 0.3971 -0.7829 6.5227 20 6 -0.5247 -1.3654 7.3723 21 6 -1.8657 -1.3742 7.0397 22 6 -2.2822 -0.7977 5.8543 23 6 -1.3632 -0.2150 5.0059 24 6 -0.0131 -0.2051 5.3343 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 0.7086 1.1613 -3.4844 32 1 3.1300 -0.7217 1.2490 33 1 1.6766 -1.7490 1.2492 34 1 0.9943 0.7581 2.3564 35 1 2.2480 0.2999 6.9173 36 1 2.4696 -1.2872 6.0702 37 1 -0.1959 -1.8147 8.2978 38 1 -2.5859 -1.8296 7.7033 39 1 -3.3297 -0.8033 5.5914 40 1 -1.6946 0.2342 4.0813 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315880495.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:18 Heat of formation + Delta-G solvation = 16.179198 kcal Electronic energy + Delta-G solvation = -20698.847990 eV Core-core repulsion = 17672.387283 eV Total energy + Delta-G solvation = -3026.460707 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.92850 -38.76013 -36.46064 -35.15805 -33.29599 -31.02977 -30.70194 -27.81258 -26.13698 -25.73834 -25.31472 -24.08451 -22.06470 -20.88386 -19.55395 -18.76489 -17.33067 -16.74129 -15.82649 -15.57619 -15.01738 -14.88627 -14.68419 -14.29531 -13.92752 -13.21281 -13.05631 -12.93347 -12.70404 -12.46304 -12.22836 -12.02959 -11.88416 -11.40441 -11.19859 -11.02738 -10.84450 -10.73697 -10.48482 -10.39480 -10.21754 -9.73750 -9.64656 -9.31477 -8.87591 -8.80955 -8.57985 -8.46859 -8.32597 -6.02700 -4.12895 1.20882 1.33099 2.90621 3.29813 3.34071 3.37408 3.58198 3.79624 4.14433 4.35206 4.39922 4.48238 4.95676 5.02814 5.11972 5.23991 5.25105 5.50657 5.57120 5.63177 5.80317 5.94619 6.05771 6.22186 6.30054 6.31435 6.41957 6.49608 6.65801 6.76231 6.81238 6.90178 6.92457 7.00584 7.01153 7.34033 7.54464 7.68452 7.99835 8.02512 8.13873 8.37434 8.65678 8.87485 9.52912 10.98669 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.031083 B = 0.003966 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.591292 B = 7058.257972 C = 7417.148229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.131 3.869 13 N -0.711 5.711 14 C 0.523 3.477 15 O -0.546 6.546 16 C -0.074 4.074 17 H 0.121 0.879 18 C -0.055 4.055 19 C -0.120 4.120 20 C -0.096 4.096 21 C -0.115 4.115 22 C -0.122 4.122 23 C -0.089 4.089 24 C -0.118 4.118 25 H 0.006 0.994 26 H 0.085 0.915 27 H 0.026 0.974 28 H 0.027 0.973 29 H 0.085 0.915 30 H 0.006 0.994 31 H 0.260 0.740 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.399 0.601 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.514 1.333 16.623 17.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.360 5.360 14 C 0.308 3.692 15 O -0.425 6.425 16 C -0.095 4.095 17 H 0.139 0.861 18 C -0.092 4.092 19 C -0.120 4.120 20 C -0.114 4.114 21 C -0.133 4.133 22 C -0.140 4.140 23 C -0.107 4.107 24 C -0.119 4.119 25 H 0.025 0.975 26 H 0.104 0.896 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.104 0.896 30 H 0.025 0.975 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.234 0.766 35 H 0.110 0.890 36 H 0.125 0.875 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.107 0.736 16.508 17.027 hybrid contribution -0.112 -0.048 -0.986 0.993 sum -4.219 0.688 15.522 16.099 Atomic orbital electron populations 1.21823 0.97744 0.99166 1.00045 1.18357 0.92817 0.92776 0.90535 1.21829 0.98591 0.98317 1.00080 1.20946 1.31569 1.12129 0.89899 0.92503 1.24872 0.94833 0.94915 0.98826 1.69788 1.36586 1.22742 1.23336 0.86632 0.79243 0.79805 0.82172 1.20280 1.21320 1.20274 1.21747 0.98174 0.95825 0.83377 1.46269 1.52179 1.31720 1.05861 1.19842 0.80563 0.84551 0.84273 1.90660 1.38787 1.26373 1.86668 1.21439 0.91863 1.01567 0.94658 0.86111 1.21467 0.92744 1.01479 0.93531 1.21738 0.97191 0.97492 0.95628 1.20151 0.91918 1.00026 0.99296 1.21021 0.95199 0.99872 0.97187 1.20948 0.99364 0.99017 0.94678 1.20639 0.91362 0.99035 0.99640 1.21895 0.92988 1.00195 0.96777 0.97535 0.89588 0.95474 0.95420 0.89585 0.97508 0.92947 0.92605 0.92735 0.76622 0.89004 0.87522 0.86317 0.85629 0.85663 0.86109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.08 37.15 0.30 -2.63 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 4 C -0.51 -13.27 8.01 -34.44 -0.28 -13.55 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.50 9.35 55.43 0.52 -22.99 16 8 Si 0.89 20.71 29.54 -169.99 -5.02 15.68 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 C 0.13 2.80 4.50 -4.04 -0.02 2.78 16 13 N -0.71 -12.70 4.96 -60.29 -0.30 -13.00 16 14 C 0.52 9.14 7.39 -10.98 -0.08 9.06 16 15 O -0.55 -11.46 15.72 5.55 0.09 -11.37 16 16 C -0.07 -0.99 4.48 -92.54 -0.41 -1.40 16 17 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 18 C -0.06 -0.67 7.54 -31.54 -0.24 -0.91 16 19 C -0.12 -1.55 7.60 -104.55 -0.79 -2.34 16 20 C -0.10 -1.08 10.04 -39.61 -0.40 -1.48 16 21 C -0.11 -1.19 10.06 -39.60 -0.40 -1.59 16 22 C -0.12 -1.35 10.03 -39.68 -0.40 -1.75 16 23 C -0.09 -1.13 10.05 -39.41 -0.40 -1.53 16 24 C -0.12 -1.60 6.84 -107.50 -0.73 -2.34 16 25 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 26 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 30 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 31 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.40 6.43 6.16 -40.82 -0.25 6.18 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.11 1.46 7.04 -51.93 -0.37 1.09 16 37 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 38 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 39 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 40 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 LS Contribution 325.42 15.07 4.90 4.90 Total: -1.00 -29.15 325.42 -9.26 -38.41 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -5.73 Total: 5.77 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -3.72 Total: -17.41 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.22 Total: -35.98 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.15 -9.26 -38.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315880495.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.588 kcal (2) G-P(sol) polarization free energy of solvation -29.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds