Wall clock time and date at job start Mon Mar 30 2020 01:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47052 * 2 1 4 4 C 1.50702 * 109.46805 * 239.99967 * 2 1 3 5 5 H 1.08004 * 119.99792 * 239.99949 * 4 2 1 6 6 C 1.37875 * 120.00025 * 60.00120 * 4 2 1 7 7 N 1.31515 * 120.00107 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00009 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47407 * 90.00193 * 8 6 4 10 10 H 1.48510 * 109.47215 * 210.00304 * 8 6 4 11 11 H 1.48501 * 109.47274 * 330.00047 * 8 6 4 12 12 C 1.53001 * 109.46836 * 120.00087 * 2 1 3 13 13 N 1.46493 * 109.47084 * 299.99612 * 12 2 1 14 14 C 1.34784 * 119.99864 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99649 * 359.72839 * 14 13 12 16 16 C 1.50694 * 119.99988 * 179.72721 * 14 13 12 17 17 H 1.08997 * 112.51049 * 50.32451 * 16 14 13 18 18 C 1.52888 * 113.16734 * 180.22783 * 16 14 13 19 19 C 1.51428 * 84.73037 * 115.22028 * 18 16 14 20 20 C 1.38955 * 145.52596 * 179.97438 * 19 18 16 21 21 C 1.37977 * 120.32077 * 180.02562 * 20 19 18 22 22 C 1.38242 * 120.17626 * 0.02562 * 21 20 19 23 23 C 1.38176 * 119.74884 * 0.02562 * 22 21 20 24 24 C 1.38233 * 120.12764 * 0.02562 * 23 22 21 25 25 H 1.09003 * 109.47126 * 300.00066 * 1 2 3 26 26 H 1.08996 * 109.47277 * 60.00047 * 1 2 3 27 27 H 1.09001 * 109.47339 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46763 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47041 * 300.00098 * 3 2 1 30 30 H 1.08994 * 109.47083 * 60.00222 * 3 2 1 31 31 H 0.97000 * 120.00440 * 179.97438 * 7 6 4 32 32 H 1.09007 * 109.46593 * 179.97438 * 12 2 1 33 33 H 1.09006 * 109.47216 * 60.00328 * 12 2 1 34 34 H 0.97000 * 120.00740 * 359.72857 * 13 12 2 35 35 H 1.08994 * 113.99260 * 229.16752 * 18 16 14 36 36 H 1.09003 * 113.98312 * 1.27868 * 18 16 14 37 37 H 1.07996 * 119.83577 * 359.97438 * 20 19 18 38 38 H 1.07991 * 119.91044 * 180.02562 * 21 20 19 39 39 H 1.07997 * 120.12203 * 180.02562 * 22 21 20 40 40 H 1.08004 * 119.93460 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3223 -1.1196 -4.0079 9 1 1.3446 -2.1615 -4.4124 10 1 2.4872 -0.1402 -5.1121 11 1 3.6307 -1.7567 -3.7120 12 6 2.0399 -0.7213 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5712 -1.4796 3.7807 16 6 1.3805 0.2231 4.8999 17 1 0.3062 0.4053 4.8712 18 6 1.8469 -0.4274 6.2026 19 6 2.6044 0.8666 6.4142 20 6 3.4545 1.5715 7.2576 21 6 3.8717 2.8432 6.9219 22 6 3.4458 3.4256 5.7428 23 6 2.5996 2.7296 4.9008 24 6 2.1801 1.4560 5.2366 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.7086 1.1613 -3.4844 32 1 3.1300 -0.7217 1.2490 33 1 1.6766 -1.7490 1.2492 34 1 0.9973 0.7603 2.3565 35 1 1.0480 -0.5963 6.9244 36 1 2.4875 -1.2975 6.0587 37 1 3.7896 1.1222 8.1807 38 1 4.5327 3.3849 7.5821 39 1 3.7732 4.4208 5.4807 40 1 2.2653 3.1816 3.9786 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315880497.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:22 Heat of formation + Delta-G solvation = 16.260995 kcal Electronic energy + Delta-G solvation = -20739.313606 eV Core-core repulsion = 17712.856446 eV Total energy + Delta-G solvation = -3026.457160 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.96506 -38.73052 -36.45928 -35.14621 -33.29028 -31.02767 -30.68976 -27.76490 -26.16394 -25.73568 -25.31572 -24.08017 -22.07989 -20.90529 -19.52220 -18.75687 -17.33428 -16.73306 -15.82829 -15.56712 -15.03437 -14.85022 -14.66752 -14.27494 -13.89463 -13.18490 -13.09860 -12.93050 -12.67064 -12.43890 -12.22724 -12.02019 -11.90819 -11.39620 -11.20172 -11.02315 -10.86851 -10.69915 -10.55898 -10.39287 -10.21267 -9.71132 -9.64417 -9.30742 -8.86957 -8.79896 -8.56775 -8.46365 -8.32027 -6.02666 -4.12734 1.22897 1.31932 2.93499 3.27993 3.35002 3.38856 3.61062 3.80021 4.12728 4.35211 4.40020 4.48639 4.96054 5.03633 5.12025 5.24137 5.27464 5.50354 5.55092 5.64354 5.80757 5.95668 6.06937 6.22708 6.30628 6.31977 6.42079 6.50042 6.66508 6.76896 6.81651 6.90642 6.92877 7.00965 7.02150 7.34453 7.54789 7.68759 8.00124 8.03439 8.14321 8.37711 8.66727 8.87906 9.53125 10.98729 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.030563 B = 0.004033 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.919372 B = 6940.984802 C = 7326.535345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.131 3.869 13 N -0.711 5.711 14 C 0.519 3.481 15 O -0.548 6.548 16 C -0.067 4.067 17 H 0.115 0.885 18 C -0.060 4.060 19 C -0.118 4.118 20 C -0.103 4.103 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.081 4.081 24 C -0.121 4.121 25 H 0.006 0.994 26 H 0.085 0.915 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.006 0.994 31 H 0.260 0.740 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.398 0.602 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.198 4.789 16.549 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.544 4.544 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.009 3.991 13 N -0.361 5.361 14 C 0.304 3.696 15 O -0.426 6.426 16 C -0.088 4.088 17 H 0.133 0.867 18 C -0.097 4.097 19 C -0.118 4.118 20 C -0.121 4.121 21 C -0.135 4.135 22 C -0.138 4.138 23 C -0.099 4.099 24 C -0.122 4.122 25 H 0.025 0.975 26 H 0.104 0.896 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.104 0.896 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.234 0.766 35 H 0.116 0.884 36 H 0.130 0.870 37 H 0.135 0.865 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.626 4.200 16.439 16.979 hybrid contribution 0.074 0.088 -0.976 0.983 sum 0.700 4.288 15.463 16.062 Atomic orbital electron populations 1.21827 0.97725 0.99178 1.00077 1.18362 0.92821 0.92780 0.90560 1.21819 0.98575 0.98334 1.00042 1.20984 1.31477 1.12086 0.89890 0.92457 1.24874 0.94863 0.94908 0.98839 1.69802 1.36700 1.22735 1.23216 0.86574 0.79337 0.79388 0.82587 1.20708 1.21262 1.19905 1.21740 0.98153 0.95815 0.83413 1.46277 1.52454 1.31444 1.05890 1.20007 0.80696 0.84485 0.84424 1.90654 1.38617 1.26649 1.86688 1.21355 1.00867 0.91835 0.94782 0.86696 1.21731 0.98573 0.95316 0.94034 1.22378 0.97011 0.96891 0.95553 1.20515 0.97789 0.94384 0.99441 1.20963 1.00192 0.95051 0.97275 1.21007 0.98119 1.00012 0.94672 1.20280 0.97258 0.92670 0.99714 1.21273 0.99547 0.94067 0.97305 0.97512 0.89589 0.95435 0.95470 0.89595 0.97531 0.93014 0.92768 0.92625 0.76647 0.88445 0.86969 0.86488 0.85832 0.85481 0.85946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 4 C -0.51 -13.26 8.01 -34.44 -0.28 -13.54 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.53 9.35 55.43 0.52 -23.01 16 8 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 12 C 0.13 2.81 4.50 -4.04 -0.02 2.79 16 13 N -0.71 -12.77 4.96 -60.29 -0.30 -13.07 16 14 C 0.52 9.10 7.33 -10.98 -0.08 9.02 16 15 O -0.55 -11.47 15.66 5.56 0.09 -11.38 16 16 C -0.07 -0.90 4.14 -96.59 -0.40 -1.30 16 17 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 18 C -0.06 -0.72 7.91 -27.58 -0.22 -0.94 16 19 C -0.12 -1.52 7.32 -107.59 -0.79 -2.31 16 20 C -0.10 -1.17 10.05 -39.41 -0.40 -1.57 16 21 C -0.12 -1.23 10.03 -39.68 -0.40 -1.62 16 22 C -0.12 -1.32 10.06 -39.60 -0.40 -1.72 16 23 C -0.08 -1.03 10.04 -39.61 -0.40 -1.43 16 24 C -0.12 -1.65 7.06 -104.55 -0.74 -2.39 16 25 H 0.01 0.12 6.87 -51.93 -0.36 -0.24 16 26 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 30 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 31 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 32 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.40 6.49 6.16 -40.82 -0.25 6.23 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.11 1.51 7.02 -51.93 -0.36 1.15 16 37 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 325.26 15.07 4.90 4.90 Total: -1.00 -29.19 325.26 -9.22 -38.41 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -5.73 Total: 5.83 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -3.68 Total: -17.39 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.22 Total: -36.08 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.19 -9.22 -38.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315880497.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.674 kcal (2) G-P(sol) polarization free energy of solvation -29.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds