Wall clock time and date at job start Mon Mar 30 2020 01:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47052 * 2 1 4 4 C 1.50702 * 109.46805 * 239.99967 * 2 1 3 5 5 H 1.08004 * 119.99792 * 239.99949 * 4 2 1 6 6 C 1.37875 * 120.00025 * 60.00120 * 4 2 1 7 7 N 1.31515 * 120.00107 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00009 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47407 * 90.00193 * 8 6 4 10 10 H 1.48510 * 109.47215 * 210.00304 * 8 6 4 11 11 H 1.48501 * 109.47274 * 330.00047 * 8 6 4 12 12 C 1.53001 * 109.46836 * 120.00087 * 2 1 3 13 13 N 1.46493 * 109.47084 * 299.99612 * 12 2 1 14 14 C 1.34784 * 119.99864 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99649 * 359.72839 * 14 13 12 16 16 C 1.50694 * 119.99988 * 179.72721 * 14 13 12 17 17 H 1.08997 * 112.51049 * 50.32451 * 16 14 13 18 18 C 1.52888 * 113.16734 * 180.22783 * 16 14 13 19 19 C 1.51428 * 84.73037 * 115.22028 * 18 16 14 20 20 C 1.38955 * 145.52596 * 179.97438 * 19 18 16 21 21 C 1.37977 * 120.32077 * 180.02562 * 20 19 18 22 22 C 1.38242 * 120.17626 * 0.02562 * 21 20 19 23 23 C 1.38176 * 119.74884 * 0.02562 * 22 21 20 24 24 C 1.38233 * 120.12764 * 0.02562 * 23 22 21 25 25 H 1.09003 * 109.47126 * 300.00066 * 1 2 3 26 26 H 1.08996 * 109.47277 * 60.00047 * 1 2 3 27 27 H 1.09001 * 109.47339 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46763 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47041 * 300.00098 * 3 2 1 30 30 H 1.08994 * 109.47083 * 60.00222 * 3 2 1 31 31 H 0.97000 * 120.00440 * 179.97438 * 7 6 4 32 32 H 1.09007 * 109.46593 * 179.97438 * 12 2 1 33 33 H 1.09006 * 109.47216 * 60.00328 * 12 2 1 34 34 H 0.97000 * 120.00740 * 359.72857 * 13 12 2 35 35 H 1.08994 * 113.99260 * 229.16752 * 18 16 14 36 36 H 1.09003 * 113.98312 * 1.27868 * 18 16 14 37 37 H 1.07996 * 119.83577 * 359.97438 * 20 19 18 38 38 H 1.07991 * 119.91044 * 180.02562 * 21 20 19 39 39 H 1.07997 * 120.12203 * 180.02562 * 22 21 20 40 40 H 1.08004 * 119.93460 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3223 -1.1196 -4.0079 9 1 1.3446 -2.1615 -4.4124 10 1 2.4872 -0.1402 -5.1121 11 1 3.6307 -1.7567 -3.7120 12 6 2.0399 -0.7213 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5712 -1.4796 3.7807 16 6 1.3805 0.2231 4.8999 17 1 0.3062 0.4053 4.8712 18 6 1.8469 -0.4274 6.2026 19 6 2.6044 0.8666 6.4142 20 6 3.4545 1.5715 7.2576 21 6 3.8717 2.8432 6.9219 22 6 3.4458 3.4256 5.7428 23 6 2.5996 2.7296 4.9008 24 6 2.1801 1.4560 5.2366 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.7086 1.1613 -3.4844 32 1 3.1300 -0.7217 1.2490 33 1 1.6766 -1.7490 1.2492 34 1 0.9973 0.7603 2.3565 35 1 1.0480 -0.5963 6.9244 36 1 2.4875 -1.2975 6.0587 37 1 3.7896 1.1222 8.1807 38 1 4.5327 3.3849 7.5821 39 1 3.7732 4.4208 5.4807 40 1 2.2653 3.1816 3.9786 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315880497.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:21 Heat of formation + Delta-G solvation = 1.025554 kcal Electronic energy + Delta-G solvation = -20739.974264 eV Core-core repulsion = 17712.856446 eV Total energy + Delta-G solvation = -3027.117819 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.02047 -40.07103 -38.15382 -36.15234 -35.02266 -32.76660 -31.67941 -28.80568 -27.60833 -27.57459 -27.14394 -25.41369 -23.10890 -21.97827 -20.76996 -20.53298 -18.64582 -17.76225 -17.63261 -16.84334 -16.58701 -16.28084 -15.95254 -15.49171 -15.23521 -14.79839 -14.54124 -14.09583 -13.92245 -13.86188 -13.51369 -13.19773 -13.11745 -12.99151 -12.86349 -12.69291 -12.59877 -12.26585 -12.14463 -11.90774 -11.52685 -11.49926 -11.29095 -10.92177 -10.70701 -10.40571 -9.97493 -9.75945 -9.51279 -8.02991 -6.18833 0.33812 0.44041 1.41985 1.44892 1.53074 1.58233 2.27881 2.48634 2.83439 3.15352 3.20586 3.45209 3.50599 3.90334 4.21228 4.22299 4.29319 4.42407 4.49240 4.65011 4.69641 4.71019 4.83107 4.95827 4.97409 5.03560 5.04596 5.10722 5.17118 5.17927 5.35315 5.47253 5.56930 5.57775 5.65874 5.66410 5.75486 6.06742 6.13726 6.20254 6.42461 6.62162 6.84914 7.25810 7.48899 8.95901 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.030563 B = 0.004033 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.919372 B = 6940.984802 C = 7326.535345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.051 3.949 3 C -0.119 4.119 4 C -0.530 4.530 5 H 0.043 0.957 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.147 3.853 13 N -0.705 5.705 14 C 0.518 3.482 15 O -0.586 6.586 16 C -0.061 4.061 17 H 0.143 0.857 18 C -0.054 4.054 19 C -0.134 4.134 20 C -0.112 4.112 21 C -0.116 4.116 22 C -0.125 4.125 23 C -0.098 4.098 24 C -0.146 4.146 25 H 0.037 0.963 26 H 0.063 0.937 27 H 0.019 0.981 28 H 0.015 0.985 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.260 0.740 32 H 0.034 0.966 33 H 0.041 0.959 34 H 0.409 0.591 35 H 0.129 0.871 36 H 0.093 0.907 37 H 0.138 0.862 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.005 5.900 18.125 19.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.050 3.950 3 C -0.177 4.177 4 C -0.568 4.568 5 H 0.061 0.939 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.202 1.202 12 C 0.024 3.976 13 N -0.356 5.356 14 C 0.305 3.695 15 O -0.467 6.467 16 C -0.082 4.082 17 H 0.161 0.839 18 C -0.091 4.091 19 C -0.134 4.134 20 C -0.130 4.130 21 C -0.133 4.133 22 C -0.143 4.143 23 C -0.116 4.116 24 C -0.147 4.147 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.038 0.962 28 H 0.035 0.965 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.246 0.754 35 H 0.147 0.853 36 H 0.111 0.889 37 H 0.155 0.845 38 H 0.171 0.829 39 H 0.168 0.832 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.417 5.333 18.025 18.803 hybrid contribution 0.180 -0.224 -1.418 1.447 sum 0.598 5.109 16.607 17.385 Atomic orbital electron populations 1.21660 0.96928 0.98734 1.00424 1.18365 0.93393 0.92999 0.90240 1.21653 0.97768 0.97886 1.00365 1.21263 1.31788 1.12174 0.91609 0.93855 1.25437 0.95121 0.95571 1.00917 1.69902 1.36943 1.23222 1.23623 0.85767 0.78643 0.78523 0.79918 1.20421 1.20759 1.20182 1.21284 0.96790 0.95221 0.84337 1.46115 1.52629 1.31588 1.05245 1.20767 0.79618 0.83921 0.85191 1.90636 1.40259 1.28511 1.87296 1.21383 1.02374 0.91685 0.92757 0.83902 1.21745 0.99112 0.94294 0.93948 1.22578 0.97718 0.97198 0.95929 1.20867 0.97277 0.94796 1.00071 1.21373 0.99790 0.94807 0.97348 1.21368 0.97377 1.00954 0.94554 1.20533 0.97937 0.92754 1.00424 1.21380 1.00643 0.94604 0.98055 0.94412 0.91858 0.96219 0.96541 0.91803 0.94528 0.92998 0.94777 0.94100 0.75429 0.85305 0.88892 0.84462 0.82900 0.83182 0.85597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 2 C 0.05 2.36 0.50 -52.93 -0.03 2.33 16 3 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 4 C -0.53 -28.23 8.01 25.60 0.21 -28.02 16 5 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 6 C 0.03 1.55 5.15 84.65 0.44 1.99 16 7 N -0.90 -47.83 9.35 21.45 0.20 -47.63 16 8 Si 0.94 42.71 29.54 68.60 2.03 44.74 16 9 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 C 0.15 6.39 4.50 86.38 0.39 6.78 16 13 N -0.71 -24.84 4.96 -463.05 -2.30 -27.14 16 14 C 0.52 17.88 7.33 87.65 0.64 18.52 16 15 O -0.59 -24.85 15.66 -3.04 -0.05 -24.90 16 16 C -0.06 -1.54 4.14 -14.66 -0.06 -1.60 16 17 H 0.14 2.72 8.14 -2.39 -0.02 2.70 16 18 C -0.05 -1.22 7.91 30.04 0.24 -0.98 16 19 C -0.13 -3.22 7.32 -21.79 -0.16 -3.38 16 20 C -0.11 -2.28 10.05 22.38 0.22 -2.06 16 21 C -0.12 -2.08 10.03 22.21 0.22 -1.86 16 22 C -0.12 -2.44 10.06 22.26 0.22 -2.22 16 23 C -0.10 -2.33 10.04 22.25 0.22 -2.10 16 24 C -0.15 -3.74 7.06 -19.82 -0.14 -3.88 16 25 H 0.04 1.39 6.87 -2.39 -0.02 1.37 16 26 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 27 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 30 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 31 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 32 H 0.03 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.41 12.59 6.16 -92.71 -0.57 12.02 16 35 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.09 2.47 7.02 -2.39 -0.02 2.46 16 37 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 38 H 0.15 1.79 8.06 -2.92 -0.02 1.77 16 39 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 40 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -63.33 325.26 3.93 -59.40 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.47 Total: 21.45 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 3.58 Total: -25.92 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: -2.10 Total: -74.76 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.05 Total: -24.90 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -63.33 3.93 -59.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315880497.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.422 kcal (2) G-P(sol) polarization free energy of solvation -63.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds