Wall clock time and date at job start Mon Mar 30 2020 02:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47150 * 2 1 4 4 H 1.08999 * 109.47559 * 54.99645 * 3 2 1 5 5 C 1.50706 * 109.47032 * 175.00093 * 3 2 1 6 6 H 1.08001 * 119.99930 * 119.99860 * 5 3 2 7 7 C 1.37871 * 119.99762 * 299.99926 * 5 3 2 8 8 N 1.31518 * 120.00279 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99682 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47299 * 60.00109 * 9 7 5 11 11 H 1.48506 * 109.47208 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47183 * 299.99603 * 9 7 5 13 13 N 1.46506 * 109.46824 * 294.99772 * 3 2 1 14 14 C 1.34777 * 119.99873 * 85.00531 * 13 3 2 15 15 O 1.21284 * 119.99754 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00137 * 179.97438 * 14 13 3 17 17 H 1.09000 * 110.26900 * 300.69965 * 16 14 13 18 18 C 1.54344 * 110.30418 * 178.62128 * 16 14 13 19 19 C 1.54343 * 102.39136 * 214.72447 * 18 16 14 20 20 C 1.51366 * 105.17136 * 26.34959 * 19 18 16 21 21 C 1.38500 * 130.39785 * 162.81666 * 20 19 18 22 22 C 1.38520 * 120.10285 * 179.83366 * 21 20 19 23 23 C 1.38249 * 119.98242 * 0.15562 * 22 21 20 24 24 C 1.38107 * 119.93661 * 359.88529 * 23 22 21 25 25 C 1.38383 * 109.78658 * 342.73074 * 20 19 18 26 26 H 1.09004 * 109.47334 * 60.00501 * 1 2 3 27 27 H 1.09007 * 109.47386 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47158 * 300.00283 * 1 2 3 29 29 H 1.09000 * 109.47158 * 239.99717 * 2 1 3 30 30 H 1.09004 * 109.47130 * 120.00013 * 2 1 3 31 31 H 0.96995 * 120.00082 * 180.02562 * 8 7 5 32 32 H 0.96995 * 120.00050 * 264.72646 * 13 3 2 33 33 H 1.08991 * 110.82486 * 332.95238 * 18 16 14 34 34 H 1.09000 * 110.82068 * 96.50563 * 18 16 14 35 35 H 1.09003 * 110.30154 * 145.27312 * 19 18 16 36 36 H 1.09000 * 110.30536 * 267.32619 * 19 18 16 37 37 H 1.08005 * 119.88942 * 0.02562 * 21 20 19 38 38 H 1.08001 * 119.98537 * 180.02562 * 22 21 20 39 39 H 1.08001 * 120.03177 * 179.85530 * 23 22 21 40 40 H 1.07996 * 119.89194 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1432 0.8783 1.2279 8 7 3.4061 0.3374 2.1733 9 14 6.0049 0.8812 1.3817 10 1 6.4994 2.2814 1.3821 11 1 6.3978 0.2177 2.6509 12 1 6.5975 0.1471 0.2348 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3670 15 8 -0.3396 2.6319 -0.4344 16 6 0.0366 3.3385 -2.6545 17 1 0.7276 4.1492 -2.8859 18 6 -1.4062 3.8771 -2.5528 19 6 -1.9366 3.6766 -3.9883 20 6 -1.1284 2.5277 -4.5523 21 6 -1.3661 1.7165 -5.6494 22 6 -0.4684 0.7148 -5.9803 23 6 0.6652 0.5218 -5.2128 24 6 0.9023 1.3300 -4.1182 25 6 0.0078 2.3339 -3.7865 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8292 -0.0604 2.9502 32 1 2.2734 2.1265 -1.9965 33 1 -1.9882 3.2936 -1.8396 34 1 -1.4074 4.9333 -2.2834 35 1 -2.9957 3.4197 -3.9677 36 1 -1.7782 4.5785 -4.5795 37 1 -2.2515 1.8679 -6.2490 38 1 -0.6554 0.0835 -6.8364 39 1 1.3645 -0.2605 -5.4687 40 1 1.7878 1.1783 -3.5190 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330881595.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:45 Heat of formation + Delta-G solvation = -25.471596 kcal Electronic energy + Delta-G solvation = -21384.587646 eV Core-core repulsion = 18356.320825 eV Total energy + Delta-G solvation = -3028.266821 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.44274 -38.47142 -35.67013 -34.71105 -32.52200 -31.53038 -30.58844 -28.87213 -27.87430 -26.61683 -23.14883 -22.60421 -21.73309 -20.83578 -19.73244 -19.28261 -17.21105 -16.51404 -15.83635 -15.42654 -15.15892 -14.99321 -14.41938 -14.20891 -13.86762 -13.19988 -13.15303 -12.69021 -12.66333 -12.55637 -12.06665 -11.60185 -11.44606 -11.41725 -11.17362 -11.11838 -10.97253 -10.84268 -10.80733 -10.63959 -10.31714 -10.12075 -9.59868 -9.11908 -9.02232 -8.69659 -8.49627 -8.35956 -7.78665 -6.11218 -4.20882 1.39474 1.45890 3.25555 3.31125 3.31980 3.41114 3.81182 4.13617 4.38056 4.45673 4.68866 5.02619 5.06009 5.13029 5.19575 5.25104 5.34015 5.54621 5.60206 5.68828 5.81117 5.84522 6.02406 6.07936 6.23535 6.40048 6.42654 6.49708 6.50335 6.59097 6.70115 6.71656 7.05414 7.08454 7.22559 7.40109 7.49166 7.63443 7.75061 7.92038 8.20133 8.69429 8.79050 9.16380 9.46740 10.93967 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.023478 B = 0.005224 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.300539 B = 5358.475554 C = 5760.841563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.125 4.125 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.707 5.707 14 C 0.511 3.489 15 O -0.545 6.545 16 C -0.077 4.077 17 H 0.105 0.895 18 C -0.103 4.103 19 C -0.082 4.082 20 C -0.093 4.093 21 C -0.113 4.113 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.098 4.098 25 C -0.083 4.083 26 H 0.039 0.961 27 H 0.021 0.979 28 H 0.048 0.952 29 H 0.030 0.970 30 H 0.098 0.902 31 H 0.265 0.735 32 H 0.386 0.614 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.041 3.471 -14.737 16.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.164 4.164 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.355 5.355 14 C 0.295 3.705 15 O -0.424 6.424 16 C -0.098 4.098 17 H 0.123 0.877 18 C -0.141 4.141 19 C -0.119 4.119 20 C -0.093 4.093 21 C -0.131 4.131 22 C -0.140 4.140 23 C -0.137 4.137 24 C -0.116 4.116 25 C -0.084 4.084 26 H 0.059 0.941 27 H 0.040 0.960 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.219 0.781 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.556 3.332 -13.837 16.114 hybrid contribution 1.445 -0.147 -0.306 1.485 sum -6.111 3.185 -14.144 15.733 Atomic orbital electron populations 1.21835 0.98382 0.97958 1.01245 1.21910 0.92584 0.99793 1.02136 1.18779 0.94096 0.89208 0.81080 0.93357 1.21195 0.90756 1.39080 1.06281 0.92233 1.24875 0.98513 0.94807 0.95390 1.69887 1.35181 1.37554 1.09304 0.86534 0.84971 0.78293 0.77444 1.20213 1.21139 1.20185 1.46589 1.14529 1.55915 1.18453 1.20085 0.82756 0.79226 0.88415 1.90649 1.51394 1.59986 1.40379 1.20979 0.99732 0.96874 0.92205 0.87685 1.22230 0.93706 1.01822 0.96297 1.21083 0.99165 0.95718 0.95902 1.20624 0.96154 0.97116 0.95450 1.20665 0.99651 0.95882 0.96867 1.21106 0.94778 0.98177 0.99912 1.21034 0.97818 0.99508 0.95355 1.20829 0.99387 0.94459 0.96969 1.20305 0.95494 0.96467 0.96096 0.94148 0.96008 0.93250 0.95153 0.88389 0.92528 0.78104 0.88992 0.90371 0.90669 0.90315 0.86433 0.86124 0.85826 0.85619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.51 37.16 0.32 -2.82 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.78 2.24 -69.08 -0.15 6.62 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -14.03 8.73 -34.44 -0.30 -14.33 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.69 11.29 55.43 0.63 -24.06 16 9 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 13 N -0.71 -14.60 4.48 -54.93 -0.25 -14.85 16 14 C 0.51 10.11 5.68 -10.99 -0.06 10.05 16 15 O -0.55 -12.62 12.64 5.55 0.07 -12.55 16 16 C -0.08 -1.16 3.26 -91.89 -0.30 -1.46 16 17 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 18 C -0.10 -1.39 6.34 -25.32 -0.16 -1.55 16 19 C -0.08 -0.92 6.77 -26.85 -0.18 -1.10 16 20 C -0.09 -1.23 6.14 -104.14 -0.64 -1.86 16 21 C -0.11 -1.32 10.06 -39.38 -0.40 -1.72 16 22 C -0.12 -1.39 10.06 -39.47 -0.40 -1.79 16 23 C -0.12 -1.51 10.05 -39.63 -0.40 -1.90 16 24 C -0.10 -1.42 9.49 -39.54 -0.38 -1.80 16 25 C -0.08 -1.22 5.60 -104.14 -0.58 -1.81 16 26 H 0.04 0.91 5.65 -51.93 -0.29 0.62 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.39 7.07 6.66 -40.82 -0.27 6.80 16 33 H 0.09 1.45 7.04 -51.93 -0.37 1.08 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 38 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 39 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.13 1.86 6.01 -52.49 -0.32 1.54 16 LS Contribution 318.73 15.07 4.80 4.80 Total: -1.00 -29.92 318.73 -9.34 -39.26 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -5.70 Total: 8.87 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -3.87 Total: -16.99 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.38 Total: -38.91 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.07 Total: -12.55 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.92 -9.34 -39.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330881595.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.786 kcal (2) G-P(sol) polarization free energy of solvation -29.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds