Wall clock time and date at job start Mon Mar 30 2020 02:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47150 * 2 1 4 4 H 1.08999 * 109.47559 * 54.99645 * 3 2 1 5 5 C 1.50706 * 109.47032 * 175.00093 * 3 2 1 6 6 H 1.08001 * 119.99930 * 119.99860 * 5 3 2 7 7 C 1.37871 * 119.99762 * 299.99926 * 5 3 2 8 8 N 1.31518 * 120.00279 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99682 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47299 * 60.00109 * 9 7 5 11 11 H 1.48506 * 109.47208 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47183 * 299.99603 * 9 7 5 13 13 N 1.46506 * 109.46824 * 294.99772 * 3 2 1 14 14 C 1.34777 * 119.99873 * 85.00531 * 13 3 2 15 15 O 1.21284 * 119.99754 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00137 * 179.97438 * 14 13 3 17 17 H 1.09000 * 110.26900 * 300.69965 * 16 14 13 18 18 C 1.54344 * 110.30418 * 178.62128 * 16 14 13 19 19 C 1.54343 * 102.39136 * 214.72447 * 18 16 14 20 20 C 1.51366 * 105.17136 * 26.34959 * 19 18 16 21 21 C 1.38500 * 130.39785 * 162.81666 * 20 19 18 22 22 C 1.38520 * 120.10285 * 179.83366 * 21 20 19 23 23 C 1.38249 * 119.98242 * 0.15562 * 22 21 20 24 24 C 1.38107 * 119.93661 * 359.88529 * 23 22 21 25 25 C 1.38383 * 109.78658 * 342.73074 * 20 19 18 26 26 H 1.09004 * 109.47334 * 60.00501 * 1 2 3 27 27 H 1.09007 * 109.47386 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47158 * 300.00283 * 1 2 3 29 29 H 1.09000 * 109.47158 * 239.99717 * 2 1 3 30 30 H 1.09004 * 109.47130 * 120.00013 * 2 1 3 31 31 H 0.96995 * 120.00082 * 180.02562 * 8 7 5 32 32 H 0.96995 * 120.00050 * 264.72646 * 13 3 2 33 33 H 1.08991 * 110.82486 * 332.95238 * 18 16 14 34 34 H 1.09000 * 110.82068 * 96.50563 * 18 16 14 35 35 H 1.09003 * 110.30154 * 145.27312 * 19 18 16 36 36 H 1.09000 * 110.30536 * 267.32619 * 19 18 16 37 37 H 1.08005 * 119.88942 * 0.02562 * 21 20 19 38 38 H 1.08001 * 119.98537 * 180.02562 * 22 21 20 39 39 H 1.08001 * 120.03177 * 179.85530 * 23 22 21 40 40 H 1.07996 * 119.89194 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1432 0.8783 1.2279 8 7 3.4061 0.3374 2.1733 9 14 6.0049 0.8812 1.3817 10 1 6.4994 2.2814 1.3821 11 1 6.3978 0.2177 2.6509 12 1 6.5975 0.1471 0.2348 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3670 15 8 -0.3396 2.6319 -0.4344 16 6 0.0366 3.3385 -2.6545 17 1 0.7276 4.1492 -2.8859 18 6 -1.4062 3.8771 -2.5528 19 6 -1.9366 3.6766 -3.9883 20 6 -1.1284 2.5277 -4.5523 21 6 -1.3661 1.7165 -5.6494 22 6 -0.4684 0.7148 -5.9803 23 6 0.6652 0.5218 -5.2128 24 6 0.9023 1.3300 -4.1182 25 6 0.0078 2.3339 -3.7865 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8292 -0.0604 2.9502 32 1 2.2734 2.1265 -1.9965 33 1 -1.9882 3.2936 -1.8396 34 1 -1.4074 4.9333 -2.2834 35 1 -2.9957 3.4197 -3.9677 36 1 -1.7782 4.5785 -4.5795 37 1 -2.2515 1.8679 -6.2490 38 1 -0.6554 0.0835 -6.8364 39 1 1.3645 -0.2605 -5.4687 40 1 1.7878 1.1783 -3.5190 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330881595.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:44 Heat of formation + Delta-G solvation = -41.870455 kcal Electronic energy + Delta-G solvation = -21385.298754 eV Core-core repulsion = 18356.320825 eV Total energy + Delta-G solvation = -3028.977929 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.65421 -39.91292 -37.18180 -36.13842 -34.36759 -33.10639 -32.02807 -29.86818 -29.33711 -28.24117 -25.08043 -23.59841 -23.16192 -21.86507 -21.35238 -20.93973 -18.89198 -17.70836 -17.45270 -17.14938 -16.46359 -16.17634 -15.91933 -15.61253 -15.26874 -14.62571 -14.52262 -14.13536 -14.00731 -13.70168 -13.57012 -13.30682 -13.18987 -12.95480 -12.67054 -12.58680 -12.48175 -12.19923 -12.10693 -12.01246 -11.83076 -11.65762 -11.58630 -11.06620 -10.70548 -10.51852 -9.68852 -9.61248 -9.40299 -8.16384 -6.34146 0.41926 0.50081 1.43972 1.45699 1.53522 1.85736 2.35607 2.63593 2.89918 3.12812 3.43706 3.60195 3.95136 4.07263 4.17828 4.23312 4.37122 4.40800 4.46838 4.54282 4.65741 4.71442 4.74759 4.81925 4.90479 5.04348 5.05521 5.15849 5.22937 5.26791 5.33474 5.42105 5.54782 5.56353 5.62668 5.64463 5.72674 5.77815 5.91687 6.12653 6.16151 6.73579 6.98454 7.32936 7.57766 8.88756 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.023478 B = 0.005224 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.300539 B = 5358.475554 C = 5760.841563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.117 4.117 3 C 0.279 3.721 4 H -0.002 1.002 5 C -0.549 4.549 6 H 0.069 0.931 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.265 1.265 13 N -0.703 5.703 14 C 0.506 3.494 15 O -0.584 6.584 16 C -0.069 4.069 17 H 0.124 0.876 18 C -0.103 4.103 19 C -0.072 4.072 20 C -0.101 4.101 21 C -0.114 4.114 22 C -0.118 4.118 23 C -0.129 4.129 24 C -0.119 4.119 25 C -0.108 4.108 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.025 0.975 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.265 0.735 32 H 0.398 0.602 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.139 0.861 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.112 3.701 -17.573 19.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.156 4.156 3 C 0.175 3.825 4 H 0.015 0.985 5 C -0.587 4.587 6 H 0.087 0.913 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.190 1.190 13 N -0.352 5.352 14 C 0.293 3.707 15 O -0.465 6.465 16 C -0.090 4.090 17 H 0.141 0.859 18 C -0.141 4.141 19 C -0.109 4.109 20 C -0.101 4.101 21 C -0.132 4.132 22 C -0.135 4.135 23 C -0.147 4.147 24 C -0.138 4.138 25 C -0.108 4.108 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.234 0.766 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.123 0.877 37 H 0.165 0.835 38 H 0.169 0.831 39 H 0.157 0.843 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.625 3.576 -16.715 18.717 hybrid contribution 1.417 -0.229 0.557 1.540 sum -6.208 3.347 -16.158 17.631 Atomic orbital electron populations 1.21655 0.97203 0.98895 1.00102 1.21745 0.93507 0.99267 1.01074 1.18355 0.93605 0.89095 0.81419 0.98458 1.21531 0.91406 1.39076 1.06724 0.91263 1.25753 1.03270 0.94305 0.94965 1.70042 1.37137 1.38283 1.09815 0.85442 0.79140 0.78445 0.77569 1.19678 1.21133 1.18957 1.46382 1.15468 1.55992 1.17388 1.20953 0.81659 0.78367 0.89682 1.90629 1.52299 1.61297 1.42300 1.20992 1.01161 0.97260 0.89557 0.85883 1.22242 0.92131 1.02198 0.97544 1.21081 0.99521 0.96204 0.94085 1.20922 0.95608 0.97828 0.95746 1.21049 1.00528 0.95123 0.96454 1.21505 0.93796 0.98048 1.00187 1.21295 0.98837 0.99570 0.94949 1.20894 0.99370 0.95499 0.98007 1.20324 0.96828 0.97097 0.96573 0.94041 0.93877 0.95545 0.94369 0.91002 0.92586 0.76630 0.91802 0.88670 0.89188 0.87748 0.83528 0.83110 0.84326 0.86954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.71 8.51 71.98 0.61 -5.10 16 2 C -0.12 -5.92 5.45 30.59 0.17 -5.76 16 3 C 0.28 14.56 2.24 44.24 0.10 14.66 16 4 H 0.00 -0.15 7.58 -2.39 -0.02 -0.17 16 5 C -0.55 -29.37 8.73 25.60 0.22 -29.14 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.45 16 7 C 0.02 0.94 5.29 84.65 0.45 1.38 16 8 N -0.91 -52.75 11.29 21.45 0.24 -52.50 16 9 Si 0.97 42.28 29.54 68.60 2.03 44.30 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 12 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 13 N -0.70 -29.91 4.48 -446.09 -2.00 -31.91 16 14 C 0.51 20.59 5.68 87.66 0.50 21.09 16 15 O -0.58 -28.26 12.64 -3.04 -0.04 -28.30 16 16 C -0.07 -2.05 3.26 -11.62 -0.04 -2.09 16 17 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 18 C -0.10 -2.68 6.34 31.51 0.20 -2.48 16 19 C -0.07 -1.41 6.77 30.52 0.21 -1.21 16 20 C -0.10 -2.39 6.14 -19.56 -0.12 -2.51 16 21 C -0.11 -2.27 10.06 22.40 0.23 -2.04 16 22 C -0.12 -2.30 10.06 22.34 0.22 -2.08 16 23 C -0.13 -3.00 10.05 22.24 0.22 -2.78 16 24 C -0.12 -3.37 9.49 22.30 0.21 -3.16 16 25 C -0.11 -3.05 5.60 -19.55 -0.11 -3.16 16 26 H 0.04 1.92 5.65 -2.38 -0.01 1.90 16 27 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.03 1.32 7.85 -2.39 -0.02 1.30 16 29 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.07 4.05 5.95 -2.38 -0.01 4.03 16 31 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 32 H 0.40 14.87 6.66 -92.71 -0.62 14.25 16 33 H 0.06 2.03 7.04 -2.39 -0.02 2.01 16 34 H 0.09 2.08 8.14 -2.39 -0.02 2.07 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 38 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 39 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 40 H 0.11 3.35 6.01 -2.91 -0.02 3.33 16 Total: -1.00 -66.99 318.73 3.73 -63.26 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: 0.42 Total: 29.52 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: 3.07 Total: -24.38 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -1.75 Total: -84.41 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.04 Total: -28.30 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -66.99 3.73 -63.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330881595.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.393 kcal (2) G-P(sol) polarization free energy of solvation -66.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds