Wall clock time and date at job start Mon Mar 30 2020 02:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46743 * 2 1 4 4 H 1.08993 * 109.47537 * 54.31598 * 3 2 1 5 5 C 1.50708 * 109.46782 * 174.31571 * 3 2 1 6 6 H 1.08000 * 120.00101 * 93.60636 * 5 3 2 7 7 C 1.37876 * 119.99832 * 273.60512 * 5 3 2 8 8 N 1.31510 * 119.99867 * 174.35082 * 7 5 3 9 9 Si 1.86805 * 120.00160 * 354.35083 * 7 5 3 10 10 H 1.48497 * 109.47193 * 275.38021 * 9 7 5 11 11 H 1.48505 * 109.46960 * 35.37966 * 9 7 5 12 12 H 1.48493 * 109.47215 * 155.37805 * 9 7 5 13 13 N 1.46497 * 109.47426 * 294.31064 * 3 2 1 14 14 C 1.34781 * 119.99603 * 84.99989 * 13 3 2 15 15 O 1.21283 * 120.00394 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99862 * 179.97438 * 14 13 3 17 17 H 1.09003 * 110.26536 * 57.93230 * 16 14 13 18 18 C 1.54347 * 110.30111 * 180.02562 * 16 14 13 19 19 C 1.54343 * 102.38878 * 92.58062 * 18 16 14 20 20 C 1.51374 * 105.17118 * 26.34279 * 19 18 16 21 21 C 1.38501 * 130.39299 * 162.79639 * 20 19 18 22 22 C 1.38096 * 120.21863 * 180.02562 * 21 20 19 23 23 C 1.38253 * 119.93350 * 0.02562 * 22 21 20 24 24 C 1.38107 * 119.93465 * 359.97438 * 23 22 21 25 25 C 1.38215 * 109.76040 * 342.81769 * 20 19 18 26 26 H 1.08994 * 109.47805 * 300.00256 * 1 2 3 27 27 H 1.09001 * 109.47084 * 60.00096 * 1 2 3 28 28 H 1.08996 * 109.47154 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47110 * 240.00019 * 2 1 3 30 30 H 1.09001 * 109.47084 * 119.99904 * 2 1 3 31 31 H 0.97000 * 120.00069 * 180.02562 * 8 7 5 32 32 H 0.96998 * 120.00386 * 265.00822 * 13 3 2 33 33 H 1.09001 * 110.81900 * 210.80314 * 18 16 14 34 34 H 1.08998 * 110.82590 * 334.35425 * 18 16 14 35 35 H 1.08995 * 110.30450 * 145.26953 * 19 18 16 36 36 H 1.08997 * 110.30089 * 267.41959 * 19 18 16 37 37 H 1.08004 * 119.89071 * 0.02562 * 21 20 19 38 38 H 1.07998 * 120.03641 * 179.97438 * 22 21 20 39 39 H 1.08004 * 120.03616 * 179.97438 * 23 22 21 40 40 H 1.08004 * 119.89630 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5959 1.9849 0.8346 5 6 3.5404 1.4448 0.1407 6 1 4.1653 1.4737 -0.7396 7 6 4.1153 1.4102 1.3934 8 7 5.4202 1.3001 1.5152 9 14 3.0409 1.5197 2.9176 10 1 2.7681 2.9457 3.2296 11 1 1.7584 0.8128 2.6710 12 1 3.7420 0.8876 4.0639 13 7 1.6666 2.0925 -1.2587 14 6 0.4506 2.6588 -1.3898 15 8 -0.3344 2.6308 -0.4657 16 6 0.0667 3.3280 -2.6844 17 1 0.1383 2.6207 -3.5107 18 6 -1.3646 3.8976 -2.5890 19 6 -1.1137 5.3472 -2.1220 20 6 0.2761 5.6875 -2.6159 21 6 0.8980 6.9153 -2.7707 22 6 2.1926 6.9837 -3.2467 23 6 2.8707 5.8232 -3.5706 24 6 2.2523 4.5979 -3.4170 25 6 0.9543 4.5274 -2.9392 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.8246 1.2754 2.3965 32 1 2.2944 2.1152 -1.9977 33 1 -1.8530 3.8835 -3.5633 34 1 -1.9516 3.3493 -1.8521 35 1 -1.8479 6.0198 -2.5652 36 1 -1.1535 5.4063 -1.0343 37 1 0.3688 7.8223 -2.5183 38 1 2.6745 7.9427 -3.3666 39 1 3.8830 5.8748 -3.9434 40 1 2.7824 3.6918 -3.6706 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330881596.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:48 Heat of formation + Delta-G solvation = -26.458220 kcal Electronic energy + Delta-G solvation = -21423.164026 eV Core-core repulsion = 18394.854421 eV Total energy + Delta-G solvation = -3028.309605 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.51396 -38.58717 -35.75156 -34.71673 -32.42547 -31.81804 -30.90069 -28.86547 -28.03595 -26.96136 -22.99131 -22.59790 -21.89657 -20.81773 -19.83128 -19.44396 -17.51807 -16.34538 -16.15469 -15.57769 -15.26088 -14.93721 -14.48758 -14.22002 -13.83712 -13.28709 -13.10106 -13.03256 -12.76477 -12.58602 -12.09783 -11.88549 -11.80585 -11.59762 -11.19345 -11.15668 -10.89979 -10.86772 -10.71764 -10.70766 -10.59923 -9.93344 -9.84729 -9.36363 -9.20309 -8.69136 -8.65552 -8.31715 -7.98343 -6.21559 -4.23871 1.42749 1.50246 3.24935 3.29627 3.34908 3.42177 3.80785 4.10679 4.34272 4.47508 4.68290 5.04924 5.08552 5.10580 5.15529 5.19776 5.41063 5.55571 5.61300 5.72549 5.82054 5.84195 6.02749 6.06509 6.09389 6.12548 6.25413 6.26894 6.29889 6.55166 6.61161 6.66539 6.74246 6.78644 6.98549 7.02355 7.09168 7.30484 7.37957 7.57422 8.15969 8.58613 8.78124 9.00259 9.40889 10.90374 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.017925 B = 0.006510 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.695433 B = 4299.733866 C = 5091.551372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.240 3.760 4 H 0.047 0.953 5 C -0.531 4.531 6 H 0.078 0.922 7 C 0.082 3.918 8 N -0.890 5.890 9 Si 0.869 3.131 10 H -0.274 1.274 11 H -0.257 1.257 12 H -0.286 1.286 13 N -0.698 5.698 14 C 0.514 3.486 15 O -0.549 6.549 16 C -0.075 4.075 17 H 0.100 0.900 18 C -0.104 4.104 19 C -0.081 4.081 20 C -0.088 4.088 21 C -0.113 4.113 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.095 4.095 25 C -0.088 4.088 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.029 0.971 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.267 0.733 32 H 0.392 0.608 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.638 7.419 -10.883 16.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C 0.137 3.863 4 H 0.065 0.935 5 C -0.569 4.569 6 H 0.096 0.904 7 C -0.122 4.122 8 N -0.527 5.527 9 Si 0.696 3.304 10 H -0.200 1.200 11 H -0.181 1.181 12 H -0.212 1.212 13 N -0.345 5.345 14 C 0.299 3.701 15 O -0.428 6.428 16 C -0.096 4.096 17 H 0.118 0.882 18 C -0.142 4.142 19 C -0.118 4.118 20 C -0.088 4.088 21 C -0.131 4.131 22 C -0.136 4.136 23 C -0.138 4.138 24 C -0.113 4.113 25 C -0.089 4.089 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.225 0.775 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.011 7.357 -10.056 15.983 hybrid contribution 0.162 0.093 0.522 0.555 sum -9.849 7.450 -9.533 15.601 Atomic orbital electron populations 1.21898 0.97436 0.98800 1.02004 1.22128 0.93691 0.99583 1.01230 1.19104 0.95530 0.88898 0.82725 0.93493 1.21006 0.88656 1.52617 0.94595 0.90415 1.24865 0.94837 0.93701 0.98818 1.69881 1.09753 1.48801 1.24226 0.86984 0.81482 0.79255 0.82680 1.19970 1.18102 1.21230 1.46379 1.14427 1.55725 1.18005 1.20094 0.82723 0.78620 0.88665 1.90630 1.50945 1.60258 1.40978 1.20870 0.95479 0.95799 0.97454 0.88195 1.22205 0.94615 0.95333 1.02031 1.21055 0.92596 0.96555 1.01591 1.20643 0.96788 0.93215 0.98191 1.20571 0.95195 0.96483 1.00859 1.21017 0.94524 0.98381 0.99710 1.21016 0.99771 0.92233 1.00765 1.20665 0.93434 0.98215 0.98972 1.20220 0.94467 0.94373 0.99810 0.93127 0.93160 0.95141 0.92978 0.92133 0.92313 0.77515 0.90863 0.88667 0.90905 0.89739 0.86467 0.86081 0.85795 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.53 37.16 0.32 -2.56 16 2 C -0.13 -2.78 5.26 -26.73 -0.14 -2.92 16 3 C 0.24 5.70 1.79 -69.08 -0.12 5.57 16 4 H 0.05 1.23 5.24 -51.93 -0.27 0.96 16 5 C -0.53 -14.31 9.06 -34.44 -0.31 -14.62 16 6 H 0.08 2.20 8.03 -52.49 -0.42 1.78 16 7 C 0.08 2.30 5.47 -17.82 -0.10 2.21 16 8 N -0.89 -26.36 13.96 55.43 0.77 -25.58 16 9 Si 0.87 21.70 26.27 -169.99 -4.47 17.23 16 10 H -0.27 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.26 -6.24 6.30 56.52 0.36 -5.89 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 N -0.70 -14.02 4.99 -54.93 -0.27 -14.30 16 14 C 0.51 9.70 5.75 -10.98 -0.06 9.64 16 15 O -0.55 -11.86 12.61 5.56 0.07 -11.79 16 16 C -0.07 -1.09 3.27 -91.89 -0.30 -1.39 16 17 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 18 C -0.10 -1.34 6.38 -25.32 -0.16 -1.50 16 19 C -0.08 -1.05 6.76 -26.85 -0.18 -1.23 16 20 C -0.09 -1.25 6.14 -104.20 -0.64 -1.89 16 21 C -0.11 -1.45 10.04 -39.54 -0.40 -1.85 16 22 C -0.12 -1.45 10.05 -39.63 -0.40 -1.85 16 23 C -0.12 -1.54 10.05 -39.62 -0.40 -1.94 16 24 C -0.09 -1.33 9.87 -39.54 -0.39 -1.72 16 25 C -0.09 -1.30 5.41 -104.21 -0.56 -1.86 16 26 H 0.05 1.08 7.89 -51.93 -0.41 0.67 16 27 H 0.05 0.98 5.63 -51.93 -0.29 0.69 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.06 1.38 7.00 -51.93 -0.36 1.01 16 31 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.39 7.11 8.21 -40.82 -0.34 6.78 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.34 6.97 -51.93 -0.36 0.98 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 40 H 0.12 1.54 7.87 -52.48 -0.41 1.13 16 LS Contribution 320.31 15.07 4.83 4.83 Total: -1.00 -31.14 320.31 -8.77 -39.91 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.85 Total: 7.62 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -3.85 Total: -17.92 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.50 Total: -39.88 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.07 Total: -11.79 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.47 Total: 17.23 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.14 -8.77 -39.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330881596.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.453 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds