Wall clock time and date at job start Mon Mar 30 2020 02:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46743 * 2 1 4 4 H 1.08993 * 109.47537 * 54.31598 * 3 2 1 5 5 C 1.50708 * 109.46782 * 174.31571 * 3 2 1 6 6 H 1.08000 * 120.00101 * 93.60636 * 5 3 2 7 7 C 1.37876 * 119.99832 * 273.60512 * 5 3 2 8 8 N 1.31510 * 119.99867 * 174.35082 * 7 5 3 9 9 Si 1.86805 * 120.00160 * 354.35083 * 7 5 3 10 10 H 1.48497 * 109.47193 * 275.38021 * 9 7 5 11 11 H 1.48505 * 109.46960 * 35.37966 * 9 7 5 12 12 H 1.48493 * 109.47215 * 155.37805 * 9 7 5 13 13 N 1.46497 * 109.47426 * 294.31064 * 3 2 1 14 14 C 1.34781 * 119.99603 * 84.99989 * 13 3 2 15 15 O 1.21283 * 120.00394 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99862 * 179.97438 * 14 13 3 17 17 H 1.09003 * 110.26536 * 57.93230 * 16 14 13 18 18 C 1.54347 * 110.30111 * 180.02562 * 16 14 13 19 19 C 1.54343 * 102.38878 * 92.58062 * 18 16 14 20 20 C 1.51374 * 105.17118 * 26.34279 * 19 18 16 21 21 C 1.38501 * 130.39299 * 162.79639 * 20 19 18 22 22 C 1.38096 * 120.21863 * 180.02562 * 21 20 19 23 23 C 1.38253 * 119.93350 * 0.02562 * 22 21 20 24 24 C 1.38107 * 119.93465 * 359.97438 * 23 22 21 25 25 C 1.38215 * 109.76040 * 342.81769 * 20 19 18 26 26 H 1.08994 * 109.47805 * 300.00256 * 1 2 3 27 27 H 1.09001 * 109.47084 * 60.00096 * 1 2 3 28 28 H 1.08996 * 109.47154 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47110 * 240.00019 * 2 1 3 30 30 H 1.09001 * 109.47084 * 119.99904 * 2 1 3 31 31 H 0.97000 * 120.00069 * 180.02562 * 8 7 5 32 32 H 0.96998 * 120.00386 * 265.00822 * 13 3 2 33 33 H 1.09001 * 110.81900 * 210.80314 * 18 16 14 34 34 H 1.08998 * 110.82590 * 334.35425 * 18 16 14 35 35 H 1.08995 * 110.30450 * 145.26953 * 19 18 16 36 36 H 1.08997 * 110.30089 * 267.41959 * 19 18 16 37 37 H 1.08004 * 119.89071 * 0.02562 * 21 20 19 38 38 H 1.07998 * 120.03641 * 179.97438 * 22 21 20 39 39 H 1.08004 * 120.03616 * 179.97438 * 23 22 21 40 40 H 1.08004 * 119.89630 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5959 1.9849 0.8346 5 6 3.5404 1.4448 0.1407 6 1 4.1653 1.4737 -0.7396 7 6 4.1153 1.4102 1.3934 8 7 5.4202 1.3001 1.5152 9 14 3.0409 1.5197 2.9176 10 1 2.7681 2.9457 3.2296 11 1 1.7584 0.8128 2.6710 12 1 3.7420 0.8876 4.0639 13 7 1.6666 2.0925 -1.2587 14 6 0.4506 2.6588 -1.3898 15 8 -0.3344 2.6308 -0.4657 16 6 0.0667 3.3280 -2.6844 17 1 0.1383 2.6207 -3.5107 18 6 -1.3646 3.8976 -2.5890 19 6 -1.1137 5.3472 -2.1220 20 6 0.2761 5.6875 -2.6159 21 6 0.8980 6.9153 -2.7707 22 6 2.1926 6.9837 -3.2467 23 6 2.8707 5.8232 -3.5706 24 6 2.2523 4.5979 -3.4170 25 6 0.9543 4.5274 -2.9392 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.8246 1.2754 2.3965 32 1 2.2944 2.1152 -1.9977 33 1 -1.8530 3.8835 -3.5633 34 1 -1.9516 3.3493 -1.8521 35 1 -1.8479 6.0198 -2.5652 36 1 -1.1535 5.4063 -1.0343 37 1 0.3688 7.8223 -2.5183 38 1 2.6745 7.9427 -3.3666 39 1 3.8830 5.8748 -3.9434 40 1 2.7824 3.6918 -3.6706 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330881596.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:47 Heat of formation + Delta-G solvation = -44.801959 kcal Electronic energy + Delta-G solvation = -21423.959470 eV Core-core repulsion = 18394.854421 eV Total energy + Delta-G solvation = -3029.105049 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.71969 -39.96425 -37.24152 -36.07010 -34.41416 -33.36145 -32.13475 -29.88655 -29.64730 -28.37526 -24.80222 -23.71415 -23.20488 -21.85547 -21.41948 -20.98304 -19.23149 -17.95425 -17.35978 -17.30486 -16.41510 -16.08664 -16.02677 -15.67663 -15.28384 -14.82744 -14.61705 -14.29190 -14.07594 -13.77613 -13.71852 -13.59535 -13.41048 -12.93966 -12.66413 -12.62264 -12.43784 -12.17458 -12.07943 -11.88876 -11.83999 -11.69003 -11.62834 -11.23649 -10.85401 -10.81419 -9.74531 -9.66173 -9.39254 -8.39807 -6.44079 0.39787 0.49270 1.26390 1.30914 1.41642 1.81127 2.25478 2.49026 2.88457 3.01573 3.44791 3.60100 3.94137 4.07318 4.19343 4.20973 4.31493 4.33038 4.41731 4.43485 4.57081 4.64034 4.70420 4.81514 4.83640 4.87963 5.05203 5.10449 5.14576 5.23878 5.26509 5.27369 5.30978 5.42042 5.55887 5.56416 5.62562 5.71518 5.76619 6.11650 6.13473 6.59064 6.92058 7.20528 7.48740 8.75368 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.017925 B = 0.006510 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.695433 B = 4299.733866 C = 5091.551372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.125 4.125 3 C 0.246 3.754 4 H 0.023 0.977 5 C -0.527 4.527 6 H 0.055 0.945 7 C 0.034 3.966 8 N -0.930 5.930 9 Si 0.920 3.080 10 H -0.279 1.279 11 H -0.249 1.249 12 H -0.277 1.277 13 N -0.701 5.701 14 C 0.513 3.487 15 O -0.577 6.577 16 C -0.068 4.068 17 H 0.124 0.876 18 C -0.100 4.100 19 C -0.080 4.080 20 C -0.104 4.104 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.131 4.131 24 C -0.111 4.111 25 C -0.109 4.109 26 H 0.032 0.968 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.269 0.731 32 H 0.401 0.599 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.139 0.861 38 H 0.148 0.852 39 H 0.142 0.858 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.067 8.129 -12.021 18.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.164 4.164 3 C 0.142 3.858 4 H 0.041 0.959 5 C -0.565 4.565 6 H 0.073 0.927 7 C -0.166 4.166 8 N -0.569 5.569 9 Si 0.745 3.255 10 H -0.205 1.205 11 H -0.173 1.173 12 H -0.203 1.203 13 N -0.349 5.349 14 C 0.300 3.700 15 O -0.458 6.458 16 C -0.089 4.089 17 H 0.142 0.858 18 C -0.138 4.138 19 C -0.117 4.117 20 C -0.104 4.104 21 C -0.139 4.139 22 C -0.137 4.137 23 C -0.149 4.149 24 C -0.129 4.129 25 C -0.109 4.109 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.235 0.765 33 H 0.123 0.877 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.081 0.919 37 H 0.157 0.843 38 H 0.166 0.834 39 H 0.159 0.841 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.452 8.069 -11.219 17.948 hybrid contribution 0.645 -0.062 0.792 1.023 sum -10.807 8.007 -10.427 17.019 Atomic orbital electron populations 1.21767 0.95634 1.00353 1.01270 1.22031 0.95215 0.97977 1.01182 1.18820 0.93154 0.90135 0.83718 0.95876 1.21234 0.90370 1.51204 0.93699 0.92680 1.25515 0.95711 0.93886 1.01462 1.69977 1.11207 1.50791 1.24953 0.86175 0.80430 0.78898 0.80025 1.20530 1.17265 1.20264 1.46204 1.15492 1.56129 1.17045 1.20821 0.81580 0.77673 0.89946 1.90615 1.51616 1.61075 1.42532 1.20876 0.96540 0.96123 0.95342 0.85819 1.22242 0.93388 0.94832 1.03289 1.21059 0.92947 0.97300 1.00370 1.20928 0.97391 0.93674 0.98437 1.20920 0.95617 0.96953 1.00397 1.21403 0.94396 0.99396 0.98507 1.21348 1.00719 0.92173 1.00632 1.20904 0.93541 0.99112 0.99364 1.20323 0.94967 0.94540 1.01075 0.94859 0.92874 0.92384 0.91909 0.93309 0.92132 0.76490 0.87719 0.90081 0.88177 0.91885 0.84291 0.83406 0.84054 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 8.53 71.98 0.61 -4.48 16 2 C -0.12 -5.35 5.26 30.59 0.16 -5.19 16 3 C 0.25 11.66 1.79 44.25 0.08 11.74 16 4 H 0.02 1.22 5.24 -2.39 -0.01 1.21 16 5 C -0.53 -28.82 9.06 25.60 0.23 -28.59 16 6 H 0.06 3.20 8.03 -2.91 -0.02 3.18 16 7 C 0.03 1.96 5.47 84.65 0.46 2.42 16 8 N -0.93 -56.05 13.96 21.45 0.30 -55.76 16 9 Si 0.92 45.17 26.27 68.60 1.80 46.97 16 10 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 11 H -0.25 -11.79 6.30 99.48 0.63 -11.17 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 N -0.70 -27.91 4.99 -446.09 -2.23 -30.14 16 14 C 0.51 18.97 5.75 87.66 0.50 19.47 16 15 O -0.58 -24.77 12.61 -3.04 -0.04 -24.81 16 16 C -0.07 -1.87 3.27 -11.62 -0.04 -1.90 16 17 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 18 C -0.10 -2.37 6.38 31.51 0.20 -2.17 16 19 C -0.08 -1.92 6.76 30.52 0.21 -1.72 16 20 C -0.10 -2.78 6.14 -19.59 -0.12 -2.90 16 21 C -0.12 -2.84 10.04 22.30 0.22 -2.62 16 22 C -0.12 -2.65 10.05 22.24 0.22 -2.42 16 23 C -0.13 -3.16 10.05 22.24 0.22 -2.93 16 24 C -0.11 -2.99 9.87 22.30 0.22 -2.77 16 25 C -0.11 -3.05 5.41 -19.60 -0.11 -3.16 16 26 H 0.03 1.37 7.89 -2.39 -0.02 1.35 16 27 H 0.05 1.99 5.63 -2.39 -0.01 1.97 16 28 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.05 2.18 7.00 -2.39 -0.02 2.16 16 31 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 32 H 0.40 14.46 8.21 -92.71 -0.76 13.70 16 33 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.08 2.18 6.97 -2.39 -0.02 2.16 16 35 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 40 H 0.13 3.13 7.87 -2.91 -0.02 3.11 16 Total: -1.00 -67.27 320.31 3.12 -64.15 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 0.20 Total: 26.81 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: 3.09 Total: -27.22 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -1.93 Total: -85.89 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.04 Total: -24.81 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.80 Total: 46.97 kcal Total: -67.27 3.12 -64.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330881596.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.349 kcal (2) G-P(sol) polarization free energy of solvation -67.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds