Wall clock time and date at job start Mon Mar 30 2020 02:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47183 * 2 1 4 4 H 1.09005 * 109.47141 * 304.99660 * 3 2 1 5 5 C 1.50694 * 109.47265 * 185.00042 * 3 2 1 6 6 H 1.08002 * 120.00179 * 239.99421 * 5 3 2 7 7 C 1.37879 * 120.00472 * 59.99739 * 5 3 2 8 8 N 1.31514 * 119.99350 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00608 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47339 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 300.00306 * 9 7 5 12 12 H 1.48504 * 109.46636 * 59.99865 * 9 7 5 13 13 N 1.46500 * 109.47436 * 64.99278 * 3 2 1 14 14 C 1.34774 * 120.00476 * 275.00648 * 13 3 2 15 15 O 1.21276 * 119.99690 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00074 * 179.97438 * 14 13 3 17 17 H 1.09003 * 110.26675 * 300.69977 * 16 14 13 18 18 C 1.54339 * 110.30180 * 178.62640 * 16 14 13 19 19 C 1.54599 * 102.27275 * 267.38721 * 18 16 14 20 20 C 1.51370 * 105.18672 * 333.64804 * 19 18 16 21 21 C 1.38499 * 130.38581 * 197.18041 * 20 19 18 22 22 C 1.38108 * 120.21087 * 180.02562 * 21 20 19 23 23 C 1.38252 * 119.93688 * 0.02562 * 22 21 20 24 24 C 1.38102 * 119.93371 * 359.97438 * 23 22 21 25 25 C 1.38216 * 109.76206 * 17.20002 * 20 19 18 26 26 H 1.08997 * 109.47414 * 60.00416 * 1 2 3 27 27 H 1.09006 * 109.46777 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46964 * 300.00053 * 1 2 3 29 29 H 1.08995 * 109.47402 * 239.99392 * 2 1 3 30 30 H 1.09005 * 109.47290 * 119.99877 * 2 1 3 31 31 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 32 32 H 0.97008 * 119.99239 * 95.00725 * 13 3 2 33 33 H 1.09000 * 110.82420 * 25.64725 * 18 16 14 34 34 H 1.09001 * 110.82142 * 149.19923 * 18 16 14 35 35 H 1.08996 * 110.28635 * 214.72220 * 19 18 16 36 36 H 1.09004 * 110.38709 * 92.62420 * 19 18 16 37 37 H 1.08001 * 119.89450 * 0.02562 * 21 20 19 38 38 H 1.08003 * 120.03197 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.03052 * 180.02562 * 23 22 21 40 40 H 1.08003 * 119.89252 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8890 0.6522 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3365 -2.1728 9 14 6.0049 0.8813 -1.3818 10 1 6.3978 0.2167 -2.6502 11 1 6.4994 2.2814 -1.3822 12 1 6.5975 0.1474 -0.2348 13 7 1.6523 2.0976 1.2517 14 6 0.4350 2.6645 1.3668 15 8 -0.3393 2.6326 0.4340 16 6 0.0361 3.3378 2.6547 17 1 0.0747 2.6270 3.4801 18 6 -1.3809 3.9366 2.5293 19 6 -1.0867 5.3840 2.0726 20 6 0.2984 5.6924 2.5996 21 6 0.9432 6.9059 2.7723 22 6 2.2281 6.9444 3.2773 23 6 2.8737 5.7683 3.6112 24 6 2.2323 4.5574 3.4397 25 6 0.9436 4.5167 2.9340 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0613 -2.9497 32 1 2.2719 2.1233 1.9977 33 1 -1.9623 3.4022 1.7780 34 1 -1.8909 3.9299 3.4926 35 1 -1.8161 6.0712 2.5014 36 1 -1.1007 5.4492 0.9846 37 1 0.4397 7.8249 2.5113 38 1 2.7283 7.8922 3.4105 39 1 3.8783 5.7967 4.0067 40 1 2.7371 3.6391 3.7012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330881598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:54 Heat of formation + Delta-G solvation = -26.699497 kcal Electronic energy + Delta-G solvation = -21337.081366 eV Core-core repulsion = 18308.761299 eV Total energy + Delta-G solvation = -3028.320067 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.44954 -38.45375 -35.63270 -34.62121 -32.45235 -31.51570 -30.62719 -28.83971 -27.82740 -26.58282 -23.19780 -22.59751 -21.75008 -20.79505 -19.73839 -19.21007 -17.34374 -16.22353 -15.93660 -15.36012 -15.20027 -14.93248 -14.35137 -14.18836 -13.89706 -13.18989 -12.96807 -12.92867 -12.68508 -12.53206 -11.86159 -11.57109 -11.53206 -11.27240 -11.14356 -11.07263 -10.92279 -10.85567 -10.75207 -10.65190 -10.32002 -10.12560 -9.61915 -9.25675 -9.03056 -8.65926 -8.48478 -8.26761 -7.77013 -6.10520 -4.19618 1.43467 1.49810 3.26048 3.31367 3.32453 3.41261 3.83609 4.18066 4.40709 4.51803 4.72931 5.07471 5.09105 5.14659 5.20625 5.22544 5.43201 5.59787 5.66214 5.76844 5.86213 5.86562 6.06750 6.14752 6.29970 6.32869 6.40475 6.47040 6.56258 6.59930 6.67658 6.75927 7.05429 7.09035 7.21528 7.38983 7.49856 7.63978 7.75727 7.93116 8.20436 8.71291 8.80124 9.17674 9.47753 10.94802 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.017604 B = 0.006179 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.200400 B = 4530.279997 C = 5701.125781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.286 1.286 11 H -0.277 1.277 12 H -0.276 1.276 13 N -0.704 5.704 14 C 0.514 3.486 15 O -0.545 6.545 16 C -0.076 4.076 17 H 0.099 0.901 18 C -0.104 4.104 19 C -0.081 4.081 20 C -0.087 4.087 21 C -0.112 4.112 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.097 4.097 25 C -0.086 4.086 26 H 0.049 0.951 27 H 0.022 0.978 28 H 0.038 0.962 29 H 0.099 0.901 30 H 0.030 0.970 31 H 0.265 0.735 32 H 0.386 0.614 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.770 8.833 12.016 15.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.211 1.211 11 H -0.202 1.202 12 H -0.202 1.202 13 N -0.351 5.351 14 C 0.298 3.702 15 O -0.424 6.424 16 C -0.098 4.098 17 H 0.117 0.883 18 C -0.142 4.142 19 C -0.118 4.118 20 C -0.088 4.088 21 C -0.130 4.130 22 C -0.138 4.138 23 C -0.139 4.139 24 C -0.115 4.115 25 C -0.086 4.086 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.117 0.883 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.218 0.782 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.288 8.683 11.120 15.067 hybrid contribution 1.534 -0.026 0.263 1.557 sum -3.754 8.658 11.383 14.786 Atomic orbital electron populations 1.21837 0.98364 0.97985 1.01223 1.21935 0.92616 0.99857 1.02235 1.18762 0.94127 0.89102 0.81072 0.93414 1.21196 0.90785 1.38898 1.06260 0.92241 1.24874 0.98509 0.94842 0.95397 1.69887 1.35159 1.37635 1.09345 0.86538 0.85010 0.78301 0.77448 1.21119 1.20213 1.20169 1.46451 1.14512 1.55723 1.18415 1.19973 0.82860 0.78847 0.88502 1.90638 1.51529 1.60190 1.40067 1.20897 0.95273 0.95861 0.97747 0.88345 1.22245 0.94771 0.95094 1.02071 1.21101 0.92472 0.96738 1.01498 1.20657 0.96887 0.93195 0.98018 1.20577 0.95104 0.96685 1.00684 1.21006 0.94777 0.98204 0.99776 1.20992 0.99732 0.92270 1.00943 1.20654 0.93485 0.98273 0.99132 1.20258 0.94517 0.94511 0.99306 0.93157 0.95895 0.94288 0.88312 0.95098 0.92545 0.78180 0.88558 0.90952 0.90946 0.89673 0.86455 0.86132 0.85917 0.86076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.87 2.24 -69.09 -0.15 6.71 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -14.19 8.73 -34.44 -0.30 -14.49 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.88 11.29 55.43 0.63 -24.26 16 9 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 13 N -0.70 -14.76 4.96 -54.93 -0.27 -15.03 16 14 C 0.51 10.18 5.73 -10.99 -0.06 10.11 16 15 O -0.55 -12.47 12.60 5.56 0.07 -12.40 16 16 C -0.08 -1.16 3.26 -91.89 -0.30 -1.46 16 17 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 18 C -0.10 -1.40 6.41 -25.19 -0.16 -1.57 16 19 C -0.08 -1.08 6.76 -26.71 -0.18 -1.26 16 20 C -0.09 -1.25 6.14 -104.20 -0.64 -1.89 16 21 C -0.11 -1.44 10.04 -39.53 -0.40 -1.84 16 22 C -0.12 -1.44 10.05 -39.62 -0.40 -1.84 16 23 C -0.12 -1.53 10.05 -39.63 -0.40 -1.93 16 24 C -0.10 -1.35 9.75 -39.54 -0.39 -1.74 16 25 C -0.09 -1.28 5.38 -104.21 -0.56 -1.84 16 26 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.04 0.84 5.65 -51.93 -0.29 0.54 16 29 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.39 7.21 7.99 -40.82 -0.33 6.89 16 33 H 0.10 1.44 6.95 -51.93 -0.36 1.08 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.12 1.50 7.81 -52.48 -0.41 1.09 16 LS Contribution 322.35 15.07 4.86 4.86 Total: -1.00 -30.14 322.35 -9.45 -39.59 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -5.85 Total: 8.79 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -3.86 Total: -17.30 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.35 Total: -39.29 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.07 Total: -12.40 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.14 -9.45 -39.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330881598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.891 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds