Wall clock time and date at job start Mon Mar 30 2020 02:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47183 * 2 1 4 4 H 1.09005 * 109.47141 * 304.99660 * 3 2 1 5 5 C 1.50694 * 109.47265 * 185.00042 * 3 2 1 6 6 H 1.08002 * 120.00179 * 239.99421 * 5 3 2 7 7 C 1.37879 * 120.00472 * 59.99739 * 5 3 2 8 8 N 1.31514 * 119.99350 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00608 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47339 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 300.00306 * 9 7 5 12 12 H 1.48504 * 109.46636 * 59.99865 * 9 7 5 13 13 N 1.46500 * 109.47436 * 64.99278 * 3 2 1 14 14 C 1.34774 * 120.00476 * 275.00648 * 13 3 2 15 15 O 1.21276 * 119.99690 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00074 * 179.97438 * 14 13 3 17 17 H 1.09003 * 110.26675 * 300.69977 * 16 14 13 18 18 C 1.54339 * 110.30180 * 178.62640 * 16 14 13 19 19 C 1.54599 * 102.27275 * 267.38721 * 18 16 14 20 20 C 1.51370 * 105.18672 * 333.64804 * 19 18 16 21 21 C 1.38499 * 130.38581 * 197.18041 * 20 19 18 22 22 C 1.38108 * 120.21087 * 180.02562 * 21 20 19 23 23 C 1.38252 * 119.93688 * 0.02562 * 22 21 20 24 24 C 1.38102 * 119.93371 * 359.97438 * 23 22 21 25 25 C 1.38216 * 109.76206 * 17.20002 * 20 19 18 26 26 H 1.08997 * 109.47414 * 60.00416 * 1 2 3 27 27 H 1.09006 * 109.46777 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46964 * 300.00053 * 1 2 3 29 29 H 1.08995 * 109.47402 * 239.99392 * 2 1 3 30 30 H 1.09005 * 109.47290 * 119.99877 * 2 1 3 31 31 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 32 32 H 0.97008 * 119.99239 * 95.00725 * 13 3 2 33 33 H 1.09000 * 110.82420 * 25.64725 * 18 16 14 34 34 H 1.09001 * 110.82142 * 149.19923 * 18 16 14 35 35 H 1.08996 * 110.28635 * 214.72220 * 19 18 16 36 36 H 1.09004 * 110.38709 * 92.62420 * 19 18 16 37 37 H 1.08001 * 119.89450 * 0.02562 * 21 20 19 38 38 H 1.08003 * 120.03197 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.03052 * 180.02562 * 23 22 21 40 40 H 1.08003 * 119.89252 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8890 0.6522 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3365 -2.1728 9 14 6.0049 0.8813 -1.3818 10 1 6.3978 0.2167 -2.6502 11 1 6.4994 2.2814 -1.3822 12 1 6.5975 0.1474 -0.2348 13 7 1.6523 2.0976 1.2517 14 6 0.4350 2.6645 1.3668 15 8 -0.3393 2.6326 0.4340 16 6 0.0361 3.3378 2.6547 17 1 0.0747 2.6270 3.4801 18 6 -1.3809 3.9366 2.5293 19 6 -1.0867 5.3840 2.0726 20 6 0.2984 5.6924 2.5996 21 6 0.9432 6.9059 2.7723 22 6 2.2281 6.9444 3.2773 23 6 2.8737 5.7683 3.6112 24 6 2.2323 4.5574 3.4397 25 6 0.9436 4.5167 2.9340 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0613 -2.9497 32 1 2.2719 2.1233 1.9977 33 1 -1.9623 3.4022 1.7780 34 1 -1.8909 3.9299 3.4926 35 1 -1.8161 6.0712 2.5014 36 1 -1.1007 5.4492 0.9846 37 1 0.4397 7.8249 2.5113 38 1 2.7283 7.8922 3.4105 39 1 3.8783 5.7967 4.0067 40 1 2.7371 3.6391 3.7012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330881598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:54 Heat of formation + Delta-G solvation = -43.468693 kcal Electronic energy + Delta-G solvation = -21337.808533 eV Core-core repulsion = 18308.761299 eV Total energy + Delta-G solvation = -3029.047234 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.68137 -39.89688 -37.17846 -36.05690 -34.33156 -33.04864 -32.07451 -29.86814 -29.34254 -28.19868 -25.09730 -23.69368 -23.13498 -21.84030 -21.43296 -20.84226 -18.97081 -17.71058 -17.31272 -17.15926 -16.43667 -16.13099 -15.92247 -15.66009 -15.28326 -14.62674 -14.49686 -14.23340 -14.05032 -13.65241 -13.50133 -13.33696 -13.17655 -12.92676 -12.67048 -12.62015 -12.24705 -12.20426 -12.14852 -11.95628 -11.85710 -11.66333 -11.57342 -11.06760 -10.80089 -10.52567 -9.70083 -9.59831 -9.37786 -8.16571 -6.33915 0.41091 0.50226 1.42865 1.44731 1.52483 1.87375 2.35669 2.63312 2.93619 3.12495 3.45292 3.60878 3.97488 4.07538 4.20420 4.21924 4.36574 4.43263 4.49061 4.57634 4.64282 4.70597 4.76674 4.82568 4.88211 5.03889 5.07319 5.14571 5.24194 5.26735 5.30620 5.44141 5.56004 5.57203 5.62796 5.64342 5.73408 5.79895 5.93628 6.12773 6.17487 6.73978 7.00911 7.33125 7.59917 8.88524 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.017604 B = 0.006179 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.200400 B = 4530.279997 C = 5701.125781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.280 3.720 4 H -0.006 1.006 5 C -0.548 4.548 6 H 0.068 0.932 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.285 1.285 11 H -0.273 1.273 12 H -0.263 1.263 13 N -0.703 5.703 14 C 0.510 3.490 15 O -0.582 6.582 16 C -0.068 4.068 17 H 0.122 0.878 18 C -0.101 4.101 19 C -0.080 4.080 20 C -0.105 4.105 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.128 4.128 24 C -0.111 4.111 25 C -0.108 4.108 26 H 0.024 0.976 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.265 0.735 32 H 0.399 0.601 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.060 0.940 37 H 0.138 0.862 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.809 9.884 14.217 17.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.012 0.988 5 C -0.587 4.587 6 H 0.086 0.914 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.211 1.211 11 H -0.198 1.198 12 H -0.188 1.188 13 N -0.351 5.351 14 C 0.297 3.703 15 O -0.463 6.463 16 C -0.089 4.089 17 H 0.140 0.860 18 C -0.139 4.139 19 C -0.117 4.117 20 C -0.105 4.105 21 C -0.139 4.139 22 C -0.137 4.137 23 C -0.146 4.146 24 C -0.129 4.129 25 C -0.108 4.108 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.233 0.767 33 H 0.095 0.905 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.079 0.921 37 H 0.156 0.844 38 H 0.167 0.833 39 H 0.163 0.837 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.329 9.746 13.361 17.095 hybrid contribution 1.219 -0.283 -0.428 1.323 sum -3.110 9.463 12.933 16.324 Atomic orbital electron populations 1.21673 0.96858 0.99178 1.00301 1.21780 0.93883 0.99074 1.01251 1.18330 0.93521 0.89149 0.81345 0.98796 1.21539 0.91535 1.38893 1.06694 0.91361 1.25752 1.03241 0.94372 0.94999 1.70043 1.37095 1.38330 1.09841 0.85467 0.79241 0.78396 0.77677 1.21063 1.19827 1.18781 1.46239 1.15526 1.55925 1.17366 1.20828 0.81756 0.77913 0.89852 1.90622 1.52427 1.61239 1.41977 1.20870 0.96388 0.96374 0.95286 0.86026 1.22278 0.93685 0.94763 1.03155 1.21088 0.93176 0.97342 1.00086 1.20898 0.97326 0.93793 0.98465 1.20920 0.95612 0.97013 1.00317 1.21414 0.94497 0.99363 0.98398 1.21354 1.00753 0.91986 1.00507 1.20914 0.93320 0.99419 0.99289 1.20321 0.95226 0.94339 1.00911 0.95643 0.93508 0.93585 0.91059 0.94068 0.92599 0.76702 0.90490 0.87687 0.88169 0.92133 0.84378 0.83281 0.83664 0.85202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 8.51 71.98 0.61 -4.96 16 2 C -0.12 -6.03 5.45 30.59 0.17 -5.87 16 3 C 0.28 14.63 2.24 44.24 0.10 14.73 16 4 H -0.01 -0.37 7.58 -2.38 -0.02 -0.38 16 5 C -0.55 -29.51 8.73 25.60 0.22 -29.29 16 6 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 7 C 0.02 0.90 5.29 84.66 0.45 1.34 16 8 N -0.91 -52.94 11.29 21.45 0.24 -52.70 16 9 Si 0.97 42.49 29.54 68.60 2.03 44.52 16 10 H -0.29 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 13 N -0.70 -29.76 4.96 -446.11 -2.21 -31.97 16 14 C 0.51 20.44 5.73 87.66 0.50 20.94 16 15 O -0.58 -27.63 12.60 -3.02 -0.04 -27.67 16 16 C -0.07 -2.00 3.26 -11.62 -0.04 -2.04 16 17 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 18 C -0.10 -2.62 6.41 31.59 0.20 -2.42 16 19 C -0.08 -2.05 6.76 30.61 0.21 -1.84 16 20 C -0.10 -2.85 6.14 -19.59 -0.12 -2.97 16 21 C -0.12 -2.82 10.04 22.30 0.22 -2.59 16 22 C -0.12 -2.53 10.05 22.24 0.22 -2.30 16 23 C -0.13 -2.90 10.05 22.24 0.22 -2.67 16 24 C -0.11 -2.89 9.75 22.30 0.22 -2.68 16 25 C -0.11 -3.07 5.38 -19.60 -0.11 -3.17 16 26 H 0.02 1.24 7.85 -2.39 -0.02 1.22 16 27 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 28 H 0.05 1.99 5.65 -2.39 -0.01 1.98 16 29 H 0.07 3.98 5.95 -2.39 -0.01 3.96 16 30 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16 32 H 0.40 14.73 7.99 -92.70 -0.74 13.99 16 33 H 0.08 2.31 6.95 -2.39 -0.02 2.29 16 34 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 38 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 39 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 40 H 0.13 3.00 7.81 -2.91 -0.02 2.98 16 Total: -1.00 -67.09 322.35 3.40 -63.69 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: 0.30 Total: 29.93 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: 3.09 Total: -25.80 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -1.97 Total: -84.67 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.04 Total: -27.67 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -67.09 3.40 -63.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330881598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.225 kcal (2) G-P(sol) polarization free energy of solvation -67.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds