Wall clock time and date at job start Mon Mar 30 2020 01:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47227 * 2 1 4 4 C 1.53005 * 109.47009 * 120.00184 * 2 1 3 5 5 H 1.08994 * 112.78185 * 50.62150 * 4 2 1 6 6 C 1.53497 * 113.46531 * 279.83539 * 4 2 1 7 7 C 1.53757 * 83.25974 * 218.98599 * 6 4 2 8 8 N 1.47064 * 87.88674 * 26.24127 * 7 6 4 9 9 C 1.34779 * 136.05886 * 152.96087 * 8 7 6 10 10 O 1.21587 * 120.00227 * 176.86116 * 9 8 7 11 11 C 1.47648 * 119.99590 * 356.59189 * 9 8 7 12 12 C 1.40006 * 119.89572 * 8.16813 * 11 9 8 13 13 C 1.36322 * 120.10928 * 179.71816 * 12 11 9 14 14 C 1.40891 * 119.88599 * 0.57681 * 13 12 11 15 15 C 1.41104 * 120.10538 * 179.67269 * 14 13 12 16 16 H 1.08001 * 120.00553 * 208.48530 * 15 14 13 17 17 C 1.40228 * 119.99740 * 28.48761 * 15 14 13 18 18 N 1.30647 * 120.00080 * 11.17172 * 17 15 14 19 19 Si 1.86804 * 120.00126 * 191.17511 * 17 15 14 20 20 H 1.48496 * 109.47158 * 89.99769 * 19 17 15 21 21 H 1.48500 * 109.47089 * 209.99928 * 19 17 15 22 22 H 1.48498 * 109.46929 * 329.99860 * 19 17 15 23 23 C 1.40897 * 119.79277 * 359.70052 * 14 13 12 24 24 C 1.36310 * 119.88862 * 359.97438 * 23 14 13 25 25 H 1.08999 * 109.46803 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46965 * 299.99678 * 1 2 3 27 27 H 1.08998 * 109.46989 * 60.00345 * 1 2 3 28 28 H 1.09000 * 109.47078 * 239.99812 * 2 1 3 29 29 H 1.08997 * 109.47102 * 171.95206 * 3 2 1 30 30 H 1.08992 * 109.46862 * 291.95547 * 3 2 1 31 31 H 1.08999 * 109.46787 * 51.95685 * 3 2 1 32 32 H 1.09001 * 114.21008 * 332.74541 * 6 4 2 33 33 H 1.09009 * 114.20497 * 105.36848 * 6 4 2 34 34 H 1.08998 * 113.46575 * 271.50459 * 7 6 4 35 35 H 1.08999 * 113.55180 * 140.99272 * 7 6 4 36 36 H 1.08003 * 119.94903 * 0.02562 * 12 11 9 37 37 H 1.07996 * 120.06283 * 180.25371 * 13 12 11 38 38 H 0.97004 * 119.99957 * 180.02562 * 18 17 15 39 39 H 1.07997 * 120.05215 * 179.97438 * 23 14 13 40 40 H 1.08009 * 119.94104 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.5796 -1.6992 1.3895 6 6 2.0169 0.1519 2.5114 7 6 3.3511 -0.5540 2.8047 8 7 3.5067 -0.7440 1.3547 9 6 4.5391 -0.8834 0.4995 10 8 4.3279 -1.0863 -0.6806 11 6 5.9265 -0.7839 0.9947 12 6 6.1729 -0.7164 2.3713 13 6 7.4525 -0.6302 2.8335 14 6 8.5271 -0.5968 1.9230 15 6 9.8530 -0.5006 2.3961 16 1 10.6105 -0.0288 1.7880 17 6 10.1870 -1.0178 3.6560 18 7 9.3377 -1.7759 4.2971 19 14 11.8462 -0.6228 4.4179 20 1 11.7356 0.6150 5.2308 21 1 12.2727 -1.7491 5.2867 22 1 12.8493 -0.4204 3.3418 23 6 8.2737 -0.6591 0.5384 24 6 6.9911 -0.7518 0.0861 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1205 1.4459 0.1439 30 1 1.7989 1.9131 -0.9531 31 1 1.5640 1.9961 0.8093 32 1 2.1063 1.2207 2.3172 33 1 1.2171 -0.0936 3.2102 34 1 3.2362 -1.4878 3.3550 35 1 4.1046 0.1024 3.2399 36 1 5.3482 -0.7377 3.0684 37 1 7.6419 -0.5823 3.8957 38 1 9.5686 -2.1333 5.1688 39 1 9.0942 -0.6334 -0.1633 40 1 6.7959 -0.7992 -0.9751 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334306895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:31 Heat of formation + Delta-G solvation = 14.941673 kcal Electronic energy + Delta-G solvation = -20877.629645 eV Core-core repulsion = 17851.115274 eV Total energy + Delta-G solvation = -3026.514370 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.40938 -37.89564 -36.64250 -34.37660 -33.75453 -30.51501 -29.45276 -28.89101 -27.12700 -26.08750 -25.28003 -22.73732 -21.38598 -20.80950 -20.03982 -18.12178 -17.48309 -16.46545 -15.94503 -15.67520 -15.25803 -14.53521 -14.05472 -13.62762 -13.50928 -13.30573 -12.95039 -12.85574 -12.50653 -12.38269 -12.24280 -11.93180 -11.81418 -11.41265 -11.37358 -11.26880 -11.17637 -10.95793 -10.87658 -10.72205 -10.57848 -10.10926 -9.87980 -9.44698 -9.33139 -8.81585 -8.21818 -7.68926 -7.46645 -6.94925 -4.59105 2.25297 2.94132 2.96837 3.00161 3.04845 3.37833 3.77125 3.88818 4.47203 4.58497 4.91797 5.04264 5.10825 5.19326 5.32110 5.51885 5.56468 5.59071 5.66835 5.71906 5.75237 5.84873 5.93889 5.98382 6.15492 6.20569 6.28945 6.33278 6.40190 6.50286 6.61714 6.80691 6.87444 7.06931 7.16923 7.48302 7.70182 7.85944 7.89338 8.10275 8.38826 8.44142 8.66804 8.78113 9.09190 9.96728 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.036519 B = 0.004116 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.546375 B = 6800.738188 C = 7244.340393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 C -0.140 4.140 4 C 0.137 3.863 5 H 0.082 0.918 6 C -0.159 4.159 7 C 0.095 3.905 8 N -0.644 5.644 9 C 0.600 3.400 10 O -0.571 6.571 11 C -0.273 4.273 12 C -0.080 4.080 13 C -0.174 4.174 14 C 0.128 3.872 15 C -0.447 4.447 16 H 0.083 0.917 17 C 0.073 3.927 18 N -0.782 5.782 19 Si 0.916 3.084 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.260 1.260 23 C -0.235 4.235 24 C -0.027 4.027 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.122 0.878 38 H 0.285 0.715 39 H 0.098 0.902 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.567 3.508 1.832 12.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 C -0.197 4.197 4 C 0.034 3.966 5 H 0.100 0.900 6 C -0.197 4.197 7 C -0.029 4.029 8 N -0.380 5.380 9 C 0.399 3.601 10 O -0.452 6.452 11 C -0.277 4.277 12 C -0.098 4.098 13 C -0.193 4.193 14 C 0.125 3.875 15 C -0.476 4.476 16 H 0.101 0.899 17 C -0.147 4.147 18 N -0.406 5.406 19 Si 0.740 3.260 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.184 1.184 23 C -0.254 4.254 24 C -0.046 4.046 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.117 0.883 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.124 0.876 37 H 0.140 0.860 38 H 0.096 0.904 39 H 0.116 0.884 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.485 3.220 1.269 11.996 hybrid contribution 0.808 -0.151 0.494 0.959 sum -10.677 3.069 1.763 11.249 Atomic orbital electron populations 1.21754 0.94998 1.01483 1.01624 1.21225 0.95138 0.96953 0.98801 1.21807 1.01874 0.95284 1.00745 1.22601 0.81556 0.97763 0.94722 0.90024 1.23712 0.97825 1.00773 0.97404 1.23092 0.96310 0.99742 0.83711 1.49552 1.05404 1.74746 1.08293 1.18203 0.83870 0.74034 0.84037 1.90631 1.85624 1.52163 1.16799 1.18902 0.90300 1.24453 0.94038 1.21111 0.97165 0.97878 0.93692 1.21062 0.91023 1.07124 1.00118 1.17824 0.93464 0.85270 0.90926 1.19821 0.95325 1.31988 1.00423 0.89896 1.26061 0.99507 0.92694 0.96454 1.69720 1.35922 1.21879 1.13107 0.86175 0.81240 0.79072 0.79531 1.19051 1.20051 1.18387 1.20759 0.95028 1.14014 0.95616 1.20366 0.92081 0.94777 0.97422 0.92869 0.92682 0.92692 0.89833 0.92170 0.93254 0.92835 0.88310 0.90069 0.90303 0.89317 0.87638 0.86023 0.90421 0.88383 0.88211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.16 37.16 0.34 -1.07 16 2 C -0.10 -1.37 2.72 -90.62 -0.25 -1.62 16 3 C -0.14 -1.88 8.15 37.16 0.30 -1.57 16 4 C 0.14 1.87 3.82 -72.38 -0.28 1.60 16 5 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 6 C -0.16 -1.74 7.68 -26.08 -0.20 -1.94 16 7 C 0.09 1.30 6.50 -8.37 -0.05 1.24 16 8 N -0.64 -11.26 2.96 -178.46 -0.53 -11.79 16 9 C 0.60 13.28 7.38 -12.42 -0.09 13.19 16 10 O -0.57 -13.96 16.05 5.29 0.08 -13.87 16 11 C -0.27 -6.44 5.89 -104.73 -0.62 -7.05 16 12 C -0.08 -1.81 9.10 -39.61 -0.36 -2.18 16 13 C -0.17 -4.33 8.60 -39.27 -0.34 -4.67 16 14 C 0.13 3.32 5.56 -106.80 -0.59 2.73 16 15 C -0.45 -11.31 9.05 -37.75 -0.34 -11.65 16 16 H 0.08 2.00 7.87 -52.49 -0.41 1.59 16 17 C 0.07 1.72 5.25 -17.31 -0.09 1.63 16 18 N -0.78 -19.05 10.83 55.56 0.60 -18.45 16 19 Si 0.92 17.59 29.58 -169.99 -5.03 12.56 16 20 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 21 H -0.28 -5.19 7.11 56.52 0.40 -4.78 16 22 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 23 C -0.23 -5.80 9.73 -39.27 -0.38 -6.18 16 24 C -0.03 -0.66 9.52 -39.61 -0.38 -1.04 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 1.39 7.38 -51.93 -0.38 1.00 16 29 H 0.06 0.99 7.10 -51.93 -0.37 0.62 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.60 6.60 -51.93 -0.34 0.26 16 32 H 0.10 1.08 5.76 -51.93 -0.30 0.78 16 33 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.09 1.26 6.12 -51.93 -0.32 0.94 16 36 H 0.11 2.06 3.82 -52.48 -0.20 1.86 16 37 H 0.12 3.06 6.20 -52.49 -0.33 2.74 16 38 H 0.28 6.25 8.29 -40.82 -0.34 5.91 16 39 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 40 H 0.10 2.34 7.65 -52.48 -0.40 1.94 16 LS Contribution 320.69 15.07 4.83 4.83 Total: -1.00 -29.01 320.69 -8.93 -37.94 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.57 Total: 7.37 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -3.33 Total: -18.59 kcal Atomic # 7 Polarization: -30.31 SS G_CDS: 0.07 Total: -30.24 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.08 Total: -13.87 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.56 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.01 -8.93 -37.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334306895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.879 kcal (2) G-P(sol) polarization free energy of solvation -29.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds