Wall clock time and date at job start Mon Mar 30 2020 01:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47038 * 2 1 4 4 C 1.52991 * 109.47262 * 120.00009 * 2 1 3 5 5 H 1.09008 * 112.73866 * 293.80014 * 4 2 1 6 6 C 1.53490 * 113.47024 * 64.62380 * 4 2 1 7 7 C 1.53488 * 83.34751 * 140.84872 * 6 4 2 8 8 N 1.47065 * 87.98675 * 333.93084 * 7 6 4 9 9 C 1.34780 * 136.06273 * 207.15176 * 8 7 6 10 10 O 1.21581 * 120.00042 * 183.03063 * 9 8 7 11 11 C 1.47646 * 119.99654 * 3.03139 * 9 8 7 12 12 C 1.40017 * 119.89549 * 351.99414 * 11 9 8 13 13 C 1.36320 * 120.10491 * 179.71872 * 12 11 9 14 14 C 1.40893 * 119.88784 * 0.52998 * 13 12 11 15 15 C 1.41111 * 120.09698 * 179.71865 * 14 13 12 16 16 H 1.07997 * 119.99512 * 214.19779 * 15 14 13 17 17 C 1.40227 * 120.00188 * 34.20465 * 15 14 13 18 18 N 1.30644 * 119.99843 * 5.62827 * 17 15 14 19 19 Si 1.86796 * 119.99874 * 185.62735 * 17 15 14 20 20 H 1.48497 * 109.47359 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47370 * 120.00002 * 19 17 15 22 22 H 1.48507 * 109.46975 * 239.99995 * 19 17 15 23 23 C 1.40889 * 119.79309 * 359.74591 * 14 13 12 24 24 C 1.36312 * 119.89381 * 359.97438 * 23 14 13 25 25 H 1.08997 * 109.46872 * 299.99892 * 1 2 3 26 26 H 1.09006 * 109.47001 * 60.00233 * 1 2 3 27 27 H 1.08995 * 109.46736 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47207 * 240.00219 * 2 1 3 29 29 H 1.09000 * 109.47531 * 72.28899 * 3 2 1 30 30 H 1.09002 * 109.47345 * 192.29278 * 3 2 1 31 31 H 1.09000 * 109.47078 * 312.28559 * 3 2 1 32 32 H 1.09000 * 114.20823 * 254.43649 * 6 4 2 33 33 H 1.09003 * 114.20591 * 27.26085 * 6 4 2 34 34 H 1.09003 * 113.47240 * 219.15193 * 7 6 4 35 35 H 1.08998 * 113.52461 * 88.72209 * 7 6 4 36 36 H 1.08000 * 119.94255 * 0.02562 * 12 11 9 37 37 H 1.07991 * 120.05341 * 180.29814 * 13 12 11 38 38 H 0.96999 * 119.99687 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.04786 * 180.02562 * 23 14 13 40 40 H 1.08002 * 119.94534 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7980 -0.1908 2.1702 6 6 1.6749 -2.2116 1.2864 7 6 3.0889 -2.3604 1.8647 8 7 3.4520 -1.1226 1.1583 9 6 4.5814 -0.5906 0.6504 10 8 4.5607 0.5188 0.1534 11 6 5.8436 -1.3550 0.6976 12 6 5.9061 -2.5554 1.4157 13 6 7.0677 -3.2676 1.4575 14 6 8.2097 -2.7882 0.7857 15 6 9.4160 -3.5188 0.8309 16 1 10.3624 -2.9985 0.8393 17 6 9.3861 -4.9203 0.8648 18 7 8.2493 -5.5525 0.7438 19 14 10.9718 -5.8833 1.0830 20 1 12.1127 -4.9395 1.1956 21 1 10.8857 -6.7059 2.3164 22 1 11.1776 -6.7703 -0.0901 23 6 8.1434 -1.5768 0.0693 24 6 6.9758 -0.8746 0.0286 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3632 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8664 1.8893 0.9789 30 1 3.1078 1.4504 -0.2188 31 1 1.5092 2.0155 -0.7603 32 1 0.8773 -2.4590 1.9869 33 1 1.5441 -2.6644 0.3036 34 1 3.6175 -3.2404 1.4981 35 1 3.1270 -2.2679 2.9501 36 1 5.0311 -2.9201 1.9333 37 1 7.1136 -4.1957 2.0076 38 1 8.2285 -6.5220 0.7676 39 1 9.0161 -1.2057 -0.4474 40 1 6.9239 0.0539 -0.5207 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334306901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:34 Heat of formation + Delta-G solvation = 17.897715 kcal Electronic energy + Delta-G solvation = -20841.789284 eV Core-core repulsion = 17815.403097 eV Total energy + Delta-G solvation = -3026.386187 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.34688 -37.88109 -36.68396 -34.50223 -33.70776 -30.54570 -29.50426 -28.99823 -26.93870 -25.86310 -25.34141 -22.55803 -21.19649 -20.82337 -20.26595 -18.66385 -17.46458 -16.59579 -15.84618 -15.42837 -15.21322 -14.34316 -14.06218 -13.66113 -13.57392 -13.33895 -12.99928 -12.70815 -12.48831 -12.29439 -12.15111 -11.89137 -11.85868 -11.76011 -11.51805 -11.27226 -11.23755 -10.95191 -10.65079 -10.60492 -10.44759 -10.06449 -9.86470 -9.43060 -9.35514 -8.67411 -8.26347 -7.70990 -7.42013 -6.91103 -4.60135 2.21597 2.93440 2.98118 3.01438 3.03678 3.34306 3.78847 3.87207 4.46777 4.58783 4.91041 5.08177 5.10077 5.26961 5.32488 5.52898 5.54415 5.55394 5.67230 5.78166 5.80369 5.89146 5.99803 6.08628 6.14033 6.26167 6.29806 6.30325 6.38484 6.60573 6.77618 6.90039 6.99781 7.06370 7.14660 7.48489 7.67306 7.82919 7.88850 8.10190 8.34490 8.43908 8.67268 8.76539 9.10958 10.02247 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.035683 B = 0.004138 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.499617 B = 6765.411278 C = 7356.069500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.095 4.095 3 C -0.176 4.176 4 C 0.138 3.862 5 H 0.082 0.918 6 C -0.154 4.154 7 C 0.094 3.906 8 N -0.644 5.644 9 C 0.600 3.400 10 O -0.561 6.561 11 C -0.266 4.266 12 C -0.082 4.082 13 C -0.167 4.167 14 C 0.130 3.870 15 C -0.453 4.453 16 H 0.083 0.917 17 C 0.072 3.928 18 N -0.791 5.791 19 Si 0.916 3.084 20 H -0.259 1.259 21 H -0.271 1.271 22 H -0.272 1.272 23 C -0.230 4.230 24 C -0.029 4.029 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.112 0.888 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.120 0.880 38 H 0.283 0.717 39 H 0.099 0.901 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.950 1.439 2.364 11.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 C -0.232 4.232 4 C 0.035 3.965 5 H 0.100 0.900 6 C -0.192 4.192 7 C -0.030 4.030 8 N -0.380 5.380 9 C 0.399 3.601 10 O -0.444 6.444 11 C -0.271 4.271 12 C -0.101 4.101 13 C -0.186 4.186 14 C 0.127 3.873 15 C -0.482 4.482 16 H 0.101 0.899 17 C -0.146 4.146 18 N -0.415 5.415 19 Si 0.740 3.260 20 H -0.183 1.183 21 H -0.196 1.196 22 H -0.198 1.198 23 C -0.249 4.249 24 C -0.049 4.049 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.130 0.870 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.124 0.876 37 H 0.138 0.862 38 H 0.094 0.906 39 H 0.117 0.883 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.830 1.875 2.002 11.172 hybrid contribution 0.601 -0.616 0.146 0.873 sum -10.230 1.260 2.149 10.529 Atomic orbital electron populations 1.21773 0.95141 1.01430 1.01557 1.21218 0.94994 0.97626 0.97529 1.22429 1.06561 0.94083 1.00169 1.22645 0.80842 0.95046 0.97986 0.89993 1.23522 0.97033 0.96280 1.02389 1.23063 0.93245 0.89477 0.97184 1.49566 1.07347 1.22302 1.58762 1.18221 0.81606 0.84590 0.75684 1.90380 1.84512 1.20571 1.48909 1.18919 0.93006 1.00404 1.14734 1.21132 0.97762 0.93573 0.97596 1.21035 0.93242 1.01090 1.03215 1.17840 0.93200 0.90081 0.86136 1.19799 0.94149 0.91004 1.43254 0.89921 1.26014 0.98100 0.98426 0.92101 1.69700 1.26966 1.10400 1.34472 0.86121 0.81543 0.79544 0.78755 1.18283 1.19606 1.19752 1.20834 0.97157 1.00195 1.06717 1.20386 0.91953 0.97050 0.95480 0.92879 0.92765 0.92734 0.91103 0.94079 0.87040 0.94175 0.89884 0.88894 0.89151 0.90243 0.87582 0.86244 0.90587 0.88273 0.88057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.01 37.16 0.33 -1.13 16 2 C -0.09 -1.30 2.62 -90.62 -0.24 -1.54 16 3 C -0.18 -2.70 8.91 37.16 0.33 -2.37 16 4 C 0.14 1.89 3.38 -72.41 -0.25 1.65 16 5 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 6 C -0.15 -1.71 7.26 -26.22 -0.19 -1.90 16 7 C 0.09 1.28 6.48 -8.52 -0.06 1.22 16 8 N -0.64 -11.15 3.56 -178.66 -0.64 -11.79 16 9 C 0.60 12.92 7.88 -12.42 -0.10 12.82 16 10 O -0.56 -12.97 13.06 5.29 0.07 -12.90 16 11 C -0.27 -6.16 5.89 -104.73 -0.62 -6.78 16 12 C -0.08 -1.84 9.11 -39.61 -0.36 -2.20 16 13 C -0.17 -4.11 8.57 -39.27 -0.34 -4.44 16 14 C 0.13 3.35 5.51 -106.80 -0.59 2.77 16 15 C -0.45 -11.45 9.03 -37.75 -0.34 -11.79 16 16 H 0.08 2.01 7.86 -52.49 -0.41 1.59 16 17 C 0.07 1.71 5.31 -17.31 -0.09 1.62 16 18 N -0.79 -19.29 10.95 55.56 0.61 -18.68 16 19 Si 0.92 17.71 29.56 -169.99 -5.03 12.69 16 20 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 21 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 22 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 23 C -0.23 -5.60 9.73 -39.27 -0.38 -5.99 16 24 C -0.03 -0.70 9.52 -39.61 -0.38 -1.08 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.50 7.59 -51.93 -0.39 0.10 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.04 0.60 8.09 -51.93 -0.42 0.18 16 30 H 0.11 2.14 4.27 -52.37 -0.22 1.91 16 31 H 0.04 0.55 8.09 -51.93 -0.42 0.13 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.04 8.12 -51.93 -0.42 0.62 16 34 H 0.09 1.31 6.13 -51.93 -0.32 0.99 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.11 2.04 3.82 -52.49 -0.20 1.84 16 37 H 0.12 2.99 6.45 -52.49 -0.34 2.65 16 38 H 0.28 6.24 8.29 -40.82 -0.34 5.90 16 39 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 40 H 0.10 2.31 7.65 -52.49 -0.40 1.91 16 LS Contribution 319.94 15.07 4.82 4.82 Total: -1.00 -28.08 319.94 -9.06 -37.14 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -5.64 Total: 7.85 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -3.25 Total: -19.13 kcal Atomic # 7 Polarization: -30.44 SS G_CDS: -0.03 Total: -30.47 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.07 Total: -12.90 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.08 -9.06 -37.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334306901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.038 kcal (2) G-P(sol) polarization free energy of solvation -28.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds