Wall clock time and date at job start Mon Mar 30 2020 01:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47038 * 2 1 4 4 C 1.52991 * 109.47262 * 120.00009 * 2 1 3 5 5 H 1.09008 * 112.73866 * 293.80014 * 4 2 1 6 6 C 1.53490 * 113.47024 * 64.62380 * 4 2 1 7 7 C 1.53488 * 83.34751 * 140.84872 * 6 4 2 8 8 N 1.47065 * 87.98675 * 333.93084 * 7 6 4 9 9 C 1.34780 * 136.06273 * 207.15176 * 8 7 6 10 10 O 1.21581 * 120.00042 * 183.03063 * 9 8 7 11 11 C 1.47646 * 119.99654 * 3.03139 * 9 8 7 12 12 C 1.40017 * 119.89549 * 351.99414 * 11 9 8 13 13 C 1.36320 * 120.10491 * 179.71872 * 12 11 9 14 14 C 1.40893 * 119.88784 * 0.52998 * 13 12 11 15 15 C 1.41111 * 120.09698 * 179.71865 * 14 13 12 16 16 H 1.07997 * 119.99512 * 214.19779 * 15 14 13 17 17 C 1.40227 * 120.00188 * 34.20465 * 15 14 13 18 18 N 1.30644 * 119.99843 * 5.62827 * 17 15 14 19 19 Si 1.86796 * 119.99874 * 185.62735 * 17 15 14 20 20 H 1.48497 * 109.47359 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47370 * 120.00002 * 19 17 15 22 22 H 1.48507 * 109.46975 * 239.99995 * 19 17 15 23 23 C 1.40889 * 119.79309 * 359.74591 * 14 13 12 24 24 C 1.36312 * 119.89381 * 359.97438 * 23 14 13 25 25 H 1.08997 * 109.46872 * 299.99892 * 1 2 3 26 26 H 1.09006 * 109.47001 * 60.00233 * 1 2 3 27 27 H 1.08995 * 109.46736 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47207 * 240.00219 * 2 1 3 29 29 H 1.09000 * 109.47531 * 72.28899 * 3 2 1 30 30 H 1.09002 * 109.47345 * 192.29278 * 3 2 1 31 31 H 1.09000 * 109.47078 * 312.28559 * 3 2 1 32 32 H 1.09000 * 114.20823 * 254.43649 * 6 4 2 33 33 H 1.09003 * 114.20591 * 27.26085 * 6 4 2 34 34 H 1.09003 * 113.47240 * 219.15193 * 7 6 4 35 35 H 1.08998 * 113.52461 * 88.72209 * 7 6 4 36 36 H 1.08000 * 119.94255 * 0.02562 * 12 11 9 37 37 H 1.07991 * 120.05341 * 180.29814 * 13 12 11 38 38 H 0.96999 * 119.99687 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.04786 * 180.02562 * 23 14 13 40 40 H 1.08002 * 119.94534 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7980 -0.1908 2.1702 6 6 1.6749 -2.2116 1.2864 7 6 3.0889 -2.3604 1.8647 8 7 3.4520 -1.1226 1.1583 9 6 4.5814 -0.5906 0.6504 10 8 4.5607 0.5188 0.1534 11 6 5.8436 -1.3550 0.6976 12 6 5.9061 -2.5554 1.4157 13 6 7.0677 -3.2676 1.4575 14 6 8.2097 -2.7882 0.7857 15 6 9.4160 -3.5188 0.8309 16 1 10.3624 -2.9985 0.8393 17 6 9.3861 -4.9203 0.8648 18 7 8.2493 -5.5525 0.7438 19 14 10.9718 -5.8833 1.0830 20 1 12.1127 -4.9395 1.1956 21 1 10.8857 -6.7059 2.3164 22 1 11.1776 -6.7703 -0.0901 23 6 8.1434 -1.5768 0.0693 24 6 6.9758 -0.8746 0.0286 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3632 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8664 1.8893 0.9789 30 1 3.1078 1.4504 -0.2188 31 1 1.5092 2.0155 -0.7603 32 1 0.8773 -2.4590 1.9869 33 1 1.5441 -2.6644 0.3036 34 1 3.6175 -3.2404 1.4981 35 1 3.1270 -2.2679 2.9501 36 1 5.0311 -2.9201 1.9333 37 1 7.1136 -4.1957 2.0076 38 1 8.2285 -6.5220 0.7676 39 1 9.0161 -1.2057 -0.4474 40 1 6.9239 0.0539 -0.5207 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334306901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:33 Heat of formation + Delta-G solvation = 3.432356 kcal Electronic energy + Delta-G solvation = -20842.416549 eV Core-core repulsion = 17815.403097 eV Total energy + Delta-G solvation = -3027.013452 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.64734 -39.55817 -38.36234 -35.77373 -35.36361 -32.27769 -31.37297 -30.41597 -28.08899 -27.39228 -26.59918 -24.05754 -22.85747 -22.33478 -21.56899 -20.00945 -19.31497 -18.10515 -17.49140 -16.86832 -16.59117 -15.76689 -15.57078 -15.11959 -15.01929 -14.92626 -14.43321 -14.15759 -13.88163 -13.63224 -13.54291 -13.33029 -13.29754 -13.00961 -12.85405 -12.72618 -12.61416 -12.39781 -12.29108 -11.78969 -11.68188 -11.60541 -11.33696 -11.18004 -10.89529 -10.27529 -9.65859 -9.58565 -9.26280 -8.69779 -6.50904 0.42255 1.10551 1.39880 1.41233 1.54725 2.02707 2.14551 2.20329 2.80703 3.43793 3.63224 3.82733 3.92329 4.07144 4.13549 4.23690 4.31339 4.41101 4.52742 4.61416 4.65531 4.76292 4.82584 4.92665 4.95319 4.97874 5.03951 5.08939 5.10339 5.18312 5.28754 5.29724 5.33983 5.53671 5.61427 5.66063 5.87173 5.96965 5.99918 6.23214 6.55299 6.79552 6.85369 6.90119 7.50836 8.26487 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.035683 B = 0.004138 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.499617 B = 6765.411278 C = 7356.069500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.094 4.094 3 C -0.174 4.174 4 C 0.131 3.869 5 H 0.099 0.901 6 C -0.127 4.127 7 C 0.082 3.918 8 N -0.652 5.652 9 C 0.592 3.408 10 O -0.587 6.587 11 C -0.276 4.276 12 C -0.074 4.074 13 C -0.184 4.184 14 C 0.103 3.897 15 C -0.487 4.487 16 H 0.081 0.919 17 C 0.035 3.965 18 N -0.818 5.818 19 Si 0.990 3.010 20 H -0.259 1.259 21 H -0.260 1.260 22 H -0.266 1.266 23 C -0.243 4.243 24 C -0.042 4.042 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.127 0.873 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.140 0.860 37 H 0.112 0.888 38 H 0.293 0.707 39 H 0.105 0.895 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.040 0.240 3.500 13.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.113 4.113 3 C -0.231 4.231 4 C 0.028 3.972 5 H 0.117 0.883 6 C -0.165 4.165 7 C -0.040 4.040 8 N -0.386 5.386 9 C 0.388 3.612 10 O -0.472 6.472 11 C -0.280 4.280 12 C -0.093 4.093 13 C -0.203 4.203 14 C 0.100 3.900 15 C -0.515 4.515 16 H 0.099 0.901 17 C -0.181 4.181 18 N -0.443 5.443 19 Si 0.811 3.189 20 H -0.183 1.183 21 H -0.185 1.185 22 H -0.191 1.191 23 C -0.263 4.263 24 C -0.061 4.061 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.145 0.855 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.157 0.843 37 H 0.130 0.870 38 H 0.104 0.896 39 H 0.123 0.877 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.972 0.665 3.154 13.367 hybrid contribution 1.111 -0.169 -0.218 1.145 sum -11.861 0.496 2.936 12.230 Atomic orbital electron populations 1.21708 0.91980 1.02923 1.02411 1.21209 0.97525 0.95978 0.96611 1.22324 1.04137 0.95851 1.00740 1.23024 0.78306 0.97268 0.98557 0.88303 1.23457 0.96389 0.93401 1.03232 1.23397 0.94755 0.87386 0.98417 1.49704 1.07671 1.23691 1.57534 1.17985 0.82417 0.84291 0.76488 1.90407 1.85239 1.21440 1.50112 1.19310 0.93980 1.00717 1.13971 1.21436 0.98176 0.92783 0.96878 1.21055 0.93992 1.01363 1.03921 1.18180 0.94169 0.90777 0.86903 1.20034 0.93995 0.92309 1.45187 0.90065 1.26848 1.01588 0.98645 0.91043 1.69734 1.28905 1.11276 1.34375 0.85025 0.76982 0.77858 0.79080 1.18273 1.18457 1.19060 1.20973 0.97742 1.00376 1.07170 1.20536 0.92349 0.97254 0.95935 0.91493 0.92516 0.90904 0.93589 0.93514 0.90907 0.93143 0.85525 0.88948 0.90221 0.87787 0.84316 0.86982 0.89605 0.87724 0.87872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 9.01 71.98 0.65 -1.63 16 2 C -0.09 -2.41 2.62 -10.80 -0.03 -2.44 16 3 C -0.17 -5.23 8.91 71.98 0.64 -4.59 16 4 C 0.13 3.19 3.38 41.78 0.14 3.34 16 5 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 6 C -0.13 -2.27 7.26 30.92 0.22 -2.05 16 7 C 0.08 2.00 6.48 83.17 0.54 2.54 16 8 N -0.65 -21.68 3.56 -837.42 -2.98 -24.66 16 9 C 0.59 25.72 7.88 86.73 0.68 26.40 16 10 O -0.59 -27.95 13.06 -3.97 -0.05 -28.00 16 11 C -0.28 -13.02 5.89 -19.93 -0.12 -13.13 16 12 C -0.07 -3.36 9.11 22.25 0.20 -3.16 16 13 C -0.18 -9.30 8.57 22.47 0.19 -9.11 16 14 C 0.10 5.47 5.51 -21.28 -0.12 5.36 16 15 C -0.49 -25.33 9.03 23.46 0.21 -25.11 16 16 H 0.08 4.08 7.86 -2.91 -0.02 4.06 16 17 C 0.03 1.67 5.31 85.35 0.45 2.12 16 18 N -0.82 -40.22 10.95 21.87 0.24 -39.98 16 19 Si 0.99 36.10 29.56 68.60 2.03 38.13 16 20 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 21 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 22 H -0.27 -9.36 7.11 99.48 0.71 -8.65 16 23 C -0.24 -12.40 9.73 22.47 0.22 -12.19 16 24 C -0.04 -2.05 9.52 22.25 0.21 -1.84 16 25 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 27 H 0.07 1.01 7.59 -2.39 -0.02 0.99 16 28 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.05 1.31 8.09 -2.39 -0.02 1.29 16 30 H 0.07 2.85 4.27 -9.36 -0.04 2.81 16 31 H 0.05 1.35 8.09 -2.39 -0.02 1.33 16 32 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.72 8.12 -2.39 -0.02 1.70 16 34 H 0.08 2.13 6.13 -2.39 -0.01 2.12 16 35 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.14 5.19 3.82 -2.91 -0.01 5.18 16 37 H 0.11 5.75 6.45 -2.91 -0.02 5.73 16 38 H 0.29 12.84 8.29 -92.71 -0.77 12.07 16 39 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16 40 H 0.10 4.94 7.65 -2.91 -0.02 4.92 16 Total: -1.00 -63.94 319.94 4.35 -59.59 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: 1.01 Total: 30.41 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 4.11 Total: -35.49 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: -2.74 Total: -64.64 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.05 Total: -28.00 kcal Atomic # 14 Polarization: 36.10 SS G_CDS: 2.03 Total: 38.13 kcal Total: -63.94 4.35 -59.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334306901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.021 kcal (2) G-P(sol) polarization free energy of solvation -63.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds