Wall clock time and date at job start Mon Mar 30 2020 01:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47030 * 2 1 4 4 C 1.53001 * 109.47357 * 119.99947 * 2 1 3 5 5 H 1.08998 * 112.73451 * 49.92605 * 4 2 1 6 6 C 1.53497 * 113.52042 * 279.13057 * 4 2 1 7 7 C 1.53753 * 83.25564 * 218.97457 * 6 4 2 8 8 N 1.47060 * 87.88852 * 26.24083 * 7 6 4 9 9 C 1.34786 * 136.05565 * 152.96248 * 8 7 6 10 10 O 1.21544 * 119.99581 * 185.22892 * 9 8 7 11 11 C 1.47881 * 119.99855 * 5.23241 * 9 8 7 12 12 C 1.39916 * 120.02864 * 6.75574 * 11 9 8 13 13 C 1.38334 * 120.35866 * 180.02562 * 12 11 9 14 14 C 1.37751 * 120.41229 * 359.97438 * 13 12 11 15 15 C 1.40744 * 120.04138 * 0.02562 * 14 13 12 16 16 C 1.41437 * 120.18056 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99961 * 332.94785 * 16 15 14 18 18 C 1.39938 * 120.00085 * 152.94281 * 16 15 14 19 19 N 1.30830 * 119.99939 * 343.62926 * 18 16 15 20 20 Si 1.86801 * 120.00093 * 163.63829 * 18 16 15 21 21 H 1.48491 * 109.47160 * 59.99469 * 20 18 16 22 22 H 1.48495 * 109.46985 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46728 * 299.99661 * 20 18 16 24 24 C 1.38995 * 120.02355 * 186.77947 * 11 9 8 25 25 H 1.09001 * 109.47025 * 299.99706 * 1 2 3 26 26 H 1.08998 * 109.47075 * 59.99955 * 1 2 3 27 27 H 1.09002 * 109.46495 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47025 * 240.00294 * 2 1 3 29 29 H 1.09003 * 109.46938 * 291.49043 * 3 2 1 30 30 H 1.09004 * 109.46923 * 51.48243 * 3 2 1 31 31 H 1.08996 * 109.47105 * 171.48212 * 3 2 1 32 32 H 1.08996 * 114.20636 * 332.73137 * 6 4 2 33 33 H 1.09003 * 114.20741 * 105.55736 * 6 4 2 34 34 H 1.09002 * 113.46626 * 271.50217 * 7 6 4 35 35 H 1.09006 * 113.55315 * 140.99061 * 7 6 4 36 36 H 1.07999 * 119.81971 * 0.04670 * 12 11 9 37 37 H 1.08003 * 119.78994 * 179.97438 * 13 12 11 38 38 H 1.08001 * 119.97952 * 180.02562 * 14 13 12 39 39 H 0.96999 * 120.00017 * 179.97438 * 19 18 16 40 40 H 1.08007 * 120.20313 * 0.25323 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.5704 -1.6939 1.3954 6 6 2.0337 0.1562 2.5087 7 6 3.3622 -0.5626 2.7961 8 7 3.5071 -0.7588 1.3458 9 6 4.5328 -0.9117 0.4849 10 8 4.3200 -0.9638 -0.7106 11 6 5.9169 -1.0163 0.9950 12 6 6.1513 -1.0989 2.3719 13 6 7.4433 -1.1964 2.8565 14 6 8.5138 -1.2140 1.9897 15 6 8.2976 -1.1318 0.6014 16 6 9.3945 -1.1501 -0.2913 17 1 10.3614 -0.7954 0.0339 18 6 9.2271 -1.6279 -1.5959 19 7 8.1752 -2.3438 -1.9004 20 14 10.5055 -1.2437 -2.9026 21 1 11.8204 -1.7932 -2.4852 22 1 10.0973 -1.8596 -4.1906 23 1 10.6148 0.2277 -3.0706 24 6 6.9860 -1.0322 0.1069 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8062 1.9106 -0.9563 30 1 1.5577 1.9984 0.8041 31 1 3.1193 1.4463 0.1522 32 1 2.1330 1.2234 2.3103 33 1 1.2378 -0.0809 3.2146 34 1 3.2410 -1.4934 3.3501 35 1 4.1253 0.0873 3.2246 36 1 5.3191 -1.0868 3.0601 37 1 7.6137 -1.2593 3.9212 38 1 9.5195 -1.2907 2.3757 39 1 8.0589 -2.6746 -2.8047 40 1 6.8101 -0.9642 -0.9566 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334398910.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:38 Heat of formation + Delta-G solvation = 15.807378 kcal Electronic energy + Delta-G solvation = -21075.419133 eV Core-core repulsion = 18048.942302 eV Total energy + Delta-G solvation = -3026.476831 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.46401 -37.89463 -36.59899 -34.40071 -33.61966 -30.50411 -29.44795 -28.76251 -27.11925 -25.96522 -24.99585 -23.11206 -21.44608 -20.84117 -19.98386 -18.29483 -17.37052 -16.12031 -15.81105 -15.63600 -14.96142 -14.68742 -14.37173 -13.70451 -13.51961 -13.27708 -13.02623 -12.79534 -12.50034 -12.45246 -12.23449 -12.10499 -11.66744 -11.47322 -11.28649 -11.14168 -11.05207 -10.87513 -10.73374 -10.68321 -10.47546 -10.12639 -9.83791 -9.58256 -9.19296 -8.86257 -8.26569 -7.59546 -7.47530 -6.75850 -4.39323 2.24311 2.84111 3.09044 3.10929 3.17962 3.29162 3.87654 3.94808 4.42910 4.65051 4.90993 5.02049 5.07738 5.16639 5.26631 5.46513 5.55188 5.62096 5.63310 5.70563 5.71812 5.82609 5.94240 5.98491 6.06775 6.19889 6.25117 6.31846 6.38449 6.50164 6.56288 6.78289 7.01814 7.06711 7.23880 7.40742 7.72467 7.83986 7.95298 8.19124 8.27363 8.52764 8.83281 8.85618 8.99220 10.19750 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.023246 B = 0.005098 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.216439 B = 5490.604055 C = 6397.336148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 C -0.139 4.139 4 C 0.137 3.863 5 H 0.084 0.916 6 C -0.160 4.160 7 C 0.100 3.900 8 N -0.643 5.643 9 C 0.592 3.408 10 O -0.541 6.541 11 C -0.124 4.124 12 C -0.224 4.224 13 C -0.102 4.102 14 C -0.209 4.209 15 C 0.100 3.900 16 C -0.465 4.465 17 H 0.080 0.920 18 C 0.074 3.926 19 N -0.787 5.787 20 Si 0.910 3.090 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.091 4.091 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.284 0.716 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.649 4.130 6.669 14.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.196 4.196 4 C 0.034 3.966 5 H 0.102 0.898 6 C -0.198 4.198 7 C -0.023 4.023 8 N -0.379 5.379 9 C 0.386 3.614 10 O -0.418 6.418 11 C -0.127 4.127 12 C -0.243 4.243 13 C -0.120 4.120 14 C -0.229 4.229 15 C 0.097 3.903 16 C -0.494 4.494 17 H 0.098 0.902 18 C -0.145 4.145 19 N -0.412 5.412 20 Si 0.734 3.266 21 H -0.190 1.190 22 H -0.203 1.203 23 H -0.188 1.188 24 C -0.111 4.111 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.662 3.922 5.642 13.536 hybrid contribution 0.620 -0.161 -0.530 0.832 sum -11.042 3.761 5.112 12.736 Atomic orbital electron populations 1.21760 0.94984 1.01499 1.01632 1.21245 0.95139 0.97031 0.98781 1.21799 1.01794 0.95243 1.00778 1.22638 0.81300 0.97840 0.94858 0.89798 1.23726 0.97870 1.00739 0.97426 1.23009 0.96391 0.99456 0.83482 1.49607 1.05623 1.74240 1.08451 1.18451 0.84117 0.74238 0.84546 1.90692 1.85052 1.50839 1.15238 1.19447 0.90872 1.08090 0.94340 1.20848 0.96275 1.13627 0.93599 1.20469 0.93029 1.01203 0.97307 1.21135 0.96906 1.11065 0.93819 1.17576 0.92576 0.88654 0.91451 1.19529 0.96866 1.37561 0.95432 0.90180 1.25940 0.96338 0.92650 0.99569 1.69784 1.26556 1.23251 1.21568 0.86334 0.80961 0.79978 0.79284 1.18984 1.20256 1.18765 1.21582 0.90880 0.99239 0.99395 0.92708 0.92648 0.92851 0.89651 0.93172 0.92924 0.92213 0.88260 0.89985 0.90296 0.89635 0.87887 0.88981 0.88662 0.90454 0.85189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.16 37.16 0.34 -1.10 16 2 C -0.10 -1.41 2.65 -90.62 -0.24 -1.65 16 3 C -0.14 -1.90 8.11 37.16 0.30 -1.59 16 4 C 0.14 1.86 3.83 -72.41 -0.28 1.58 16 5 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 6 C -0.16 -1.67 7.69 -26.08 -0.20 -1.87 16 7 C 0.10 1.30 6.12 -8.39 -0.05 1.24 16 8 N -0.64 -11.18 2.95 -178.42 -0.53 -11.71 16 9 C 0.59 13.50 7.50 -12.31 -0.09 13.41 16 10 O -0.54 -13.93 15.86 5.33 0.08 -13.85 16 11 C -0.12 -3.04 5.87 -105.04 -0.62 -3.65 16 12 C -0.22 -4.84 9.15 -38.92 -0.36 -5.19 16 13 C -0.10 -2.21 10.01 -39.72 -0.40 -2.61 16 14 C -0.21 -5.07 9.78 -38.81 -0.38 -5.45 16 15 C 0.10 2.69 5.55 -106.87 -0.59 2.10 16 16 C -0.46 -12.44 9.05 -37.73 -0.34 -12.79 16 17 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 18 C 0.07 1.90 5.15 -17.34 -0.09 1.82 16 19 N -0.79 -21.40 11.05 55.55 0.61 -20.79 16 20 Si 0.91 19.15 29.59 -169.99 -5.03 14.12 16 21 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 24 C -0.09 -2.48 8.21 -38.44 -0.32 -2.80 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.09 1.46 7.29 -51.93 -0.38 1.08 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.59 6.64 -51.93 -0.34 0.24 16 31 H 0.06 1.00 7.16 -51.93 -0.37 0.63 16 32 H 0.10 1.04 5.77 -51.93 -0.30 0.74 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.91 8.13 -51.93 -0.42 0.48 16 35 H 0.09 1.12 6.74 -51.93 -0.35 0.77 16 36 H 0.10 1.86 4.15 -52.49 -0.22 1.64 16 37 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 38 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 39 H 0.28 7.14 8.30 -40.82 -0.34 6.80 16 40 H 0.13 3.84 5.91 -52.48 -0.31 3.53 16 LS Contribution 321.53 15.07 4.85 4.85 Total: -1.00 -30.56 321.53 -8.95 -39.50 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -5.63 Total: 6.42 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -3.31 Total: -18.55 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.09 Total: -32.49 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.08 Total: -13.85 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.56 -8.95 -39.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334398910.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.311 kcal (2) G-P(sol) polarization free energy of solvation -30.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds