Wall clock time and date at job start Mon Mar 30 2020 01:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47030 * 2 1 4 4 C 1.53001 * 109.47357 * 119.99947 * 2 1 3 5 5 H 1.08998 * 112.73451 * 49.92605 * 4 2 1 6 6 C 1.53497 * 113.52042 * 279.13057 * 4 2 1 7 7 C 1.53753 * 83.25564 * 218.97457 * 6 4 2 8 8 N 1.47060 * 87.88852 * 26.24083 * 7 6 4 9 9 C 1.34786 * 136.05565 * 152.96248 * 8 7 6 10 10 O 1.21544 * 119.99581 * 185.22892 * 9 8 7 11 11 C 1.47881 * 119.99855 * 5.23241 * 9 8 7 12 12 C 1.39916 * 120.02864 * 6.75574 * 11 9 8 13 13 C 1.38334 * 120.35866 * 180.02562 * 12 11 9 14 14 C 1.37751 * 120.41229 * 359.97438 * 13 12 11 15 15 C 1.40744 * 120.04138 * 0.02562 * 14 13 12 16 16 C 1.41437 * 120.18056 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99961 * 332.94785 * 16 15 14 18 18 C 1.39938 * 120.00085 * 152.94281 * 16 15 14 19 19 N 1.30830 * 119.99939 * 343.62926 * 18 16 15 20 20 Si 1.86801 * 120.00093 * 163.63829 * 18 16 15 21 21 H 1.48491 * 109.47160 * 59.99469 * 20 18 16 22 22 H 1.48495 * 109.46985 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46728 * 299.99661 * 20 18 16 24 24 C 1.38995 * 120.02355 * 186.77947 * 11 9 8 25 25 H 1.09001 * 109.47025 * 299.99706 * 1 2 3 26 26 H 1.08998 * 109.47075 * 59.99955 * 1 2 3 27 27 H 1.09002 * 109.46495 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47025 * 240.00294 * 2 1 3 29 29 H 1.09003 * 109.46938 * 291.49043 * 3 2 1 30 30 H 1.09004 * 109.46923 * 51.48243 * 3 2 1 31 31 H 1.08996 * 109.47105 * 171.48212 * 3 2 1 32 32 H 1.08996 * 114.20636 * 332.73137 * 6 4 2 33 33 H 1.09003 * 114.20741 * 105.55736 * 6 4 2 34 34 H 1.09002 * 113.46626 * 271.50217 * 7 6 4 35 35 H 1.09006 * 113.55315 * 140.99061 * 7 6 4 36 36 H 1.07999 * 119.81971 * 0.04670 * 12 11 9 37 37 H 1.08003 * 119.78994 * 179.97438 * 13 12 11 38 38 H 1.08001 * 119.97952 * 180.02562 * 14 13 12 39 39 H 0.96999 * 120.00017 * 179.97438 * 19 18 16 40 40 H 1.08007 * 120.20313 * 0.25323 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.5704 -1.6939 1.3954 6 6 2.0337 0.1562 2.5087 7 6 3.3622 -0.5626 2.7961 8 7 3.5071 -0.7588 1.3458 9 6 4.5328 -0.9117 0.4849 10 8 4.3200 -0.9638 -0.7106 11 6 5.9169 -1.0163 0.9950 12 6 6.1513 -1.0989 2.3719 13 6 7.4433 -1.1964 2.8565 14 6 8.5138 -1.2140 1.9897 15 6 8.2976 -1.1318 0.6014 16 6 9.3945 -1.1501 -0.2913 17 1 10.3614 -0.7954 0.0339 18 6 9.2271 -1.6279 -1.5959 19 7 8.1752 -2.3438 -1.9004 20 14 10.5055 -1.2437 -2.9026 21 1 11.8204 -1.7932 -2.4852 22 1 10.0973 -1.8596 -4.1906 23 1 10.6148 0.2277 -3.0706 24 6 6.9860 -1.0322 0.1069 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8062 1.9106 -0.9563 30 1 1.5577 1.9984 0.8041 31 1 3.1193 1.4463 0.1522 32 1 2.1330 1.2234 2.3103 33 1 1.2378 -0.0809 3.2146 34 1 3.2410 -1.4934 3.3501 35 1 4.1253 0.0873 3.2246 36 1 5.3191 -1.0868 3.0601 37 1 7.6137 -1.2593 3.9212 38 1 9.5195 -1.2907 2.3757 39 1 8.0589 -2.6746 -2.8047 40 1 6.8101 -0.9642 -0.9566 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334398910.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:37 Heat of formation + Delta-G solvation = -1.941847 kcal Electronic energy + Delta-G solvation = -21076.188797 eV Core-core repulsion = 18048.942302 eV Total energy + Delta-G solvation = -3027.246495 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.76020 -39.58551 -38.38492 -35.74741 -35.29107 -32.28993 -31.32514 -30.18865 -28.09736 -27.49196 -26.48678 -24.59042 -22.94122 -22.49764 -21.38542 -19.87158 -18.93198 -17.60356 -17.40301 -17.08183 -16.60290 -16.38241 -15.71587 -15.18945 -15.11863 -14.89587 -14.39266 -14.26059 -13.95157 -13.80840 -13.54223 -13.28266 -13.12544 -12.92656 -12.82449 -12.62600 -12.43406 -12.27021 -12.13577 -11.93616 -11.87858 -11.77255 -11.50128 -11.09677 -10.99016 -10.53971 -9.73755 -9.43823 -9.35633 -8.67449 -6.41584 0.38211 0.98775 1.33119 1.45642 1.47812 1.93642 2.11306 2.18087 2.77682 3.41467 3.66079 3.76131 3.90831 4.02672 4.07471 4.24592 4.35944 4.46350 4.58841 4.61930 4.65407 4.71769 4.77075 4.79926 4.93634 5.02529 5.03474 5.05617 5.11938 5.19382 5.25007 5.30174 5.31962 5.44569 5.49542 5.55216 5.85460 5.93787 6.02227 6.27479 6.55195 6.79757 6.85784 6.92984 7.31901 8.30019 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.023246 B = 0.005098 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.216439 B = 5490.604055 C = 6397.336148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.105 4.105 3 C -0.134 4.134 4 C 0.125 3.875 5 H 0.101 0.899 6 C -0.129 4.129 7 C 0.087 3.913 8 N -0.646 5.646 9 C 0.581 3.419 10 O -0.592 6.592 11 C -0.138 4.138 12 C -0.205 4.205 13 C -0.098 4.098 14 C -0.215 4.215 15 C 0.068 3.932 16 C -0.503 4.503 17 H 0.085 0.915 18 C 0.028 3.972 19 N -0.832 5.832 20 Si 0.984 3.016 21 H -0.250 1.250 22 H -0.273 1.273 23 H -0.260 1.260 24 C -0.132 4.132 25 H 0.082 0.918 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.036 0.964 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.020 0.980 32 H 0.101 0.899 33 H 0.130 0.870 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.147 0.853 37 H 0.141 0.859 38 H 0.110 0.890 39 H 0.285 0.715 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.485 4.755 10.126 17.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.124 4.124 3 C -0.191 4.191 4 C 0.022 3.978 5 H 0.119 0.881 6 C -0.166 4.166 7 C -0.035 4.035 8 N -0.381 5.381 9 C 0.374 3.626 10 O -0.474 6.474 11 C -0.141 4.141 12 C -0.224 4.224 13 C -0.116 4.116 14 C -0.235 4.235 15 C 0.066 3.934 16 C -0.532 4.532 17 H 0.103 0.897 18 C -0.186 4.186 19 N -0.458 5.458 20 Si 0.804 3.196 21 H -0.174 1.174 22 H -0.198 1.198 23 H -0.184 1.184 24 C -0.152 4.152 25 H 0.101 0.899 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.039 0.961 32 H 0.119 0.881 33 H 0.148 0.852 34 H 0.125 0.875 35 H 0.106 0.894 36 H 0.165 0.835 37 H 0.159 0.841 38 H 0.128 0.872 39 H 0.095 0.905 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.535 4.558 9.179 16.977 hybrid contribution 1.018 -0.332 -1.395 1.759 sum -12.517 4.226 7.784 15.333 Atomic orbital electron populations 1.21693 0.91693 1.02463 1.03053 1.21227 0.97789 0.96302 0.97096 1.21768 0.99458 0.95958 1.01945 1.23103 0.78593 0.99665 0.96390 0.88124 1.23647 0.97448 0.99896 0.95592 1.23461 0.98018 1.01294 0.80678 1.49737 1.06518 1.71446 1.10366 1.18303 0.84932 0.74729 0.84589 1.90651 1.85827 1.53413 1.17505 1.19837 0.91463 1.07234 0.95540 1.21378 0.97949 1.10328 0.92737 1.20980 0.92090 0.99127 0.99409 1.21454 0.98703 1.10296 0.93024 1.17931 0.92595 0.89667 0.93191 1.19840 0.97253 1.39288 0.96835 0.89688 1.26880 0.98383 0.91762 1.01565 1.69905 1.28923 1.24982 1.21983 0.85228 0.78468 0.79717 0.76185 1.17359 1.19757 1.18444 1.21374 0.92520 1.03066 0.98259 0.89916 0.92585 0.92149 0.94551 0.93575 0.89457 0.96114 0.88087 0.85231 0.87538 0.89410 0.83531 0.84149 0.87219 0.90454 0.89066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 9.16 71.98 0.66 -1.66 16 2 C -0.10 -2.80 2.65 -10.79 -0.03 -2.83 16 3 C -0.13 -3.60 8.11 71.98 0.58 -3.02 16 4 C 0.12 3.06 3.83 41.79 0.16 3.22 16 5 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 6 C -0.13 -2.02 7.69 31.02 0.24 -1.78 16 7 C 0.09 1.87 6.12 83.26 0.51 2.38 16 8 N -0.65 -21.79 2.95 -836.67 -2.46 -24.25 16 9 C 0.58 27.61 7.50 86.80 0.65 28.26 16 10 O -0.59 -33.09 15.86 -3.85 -0.06 -33.15 16 11 C -0.14 -6.93 5.87 -20.14 -0.12 -7.05 16 12 C -0.20 -8.45 9.15 22.70 0.21 -8.24 16 13 C -0.10 -4.01 10.01 22.18 0.22 -3.79 16 14 C -0.21 -10.37 9.78 22.77 0.22 -10.15 16 15 C 0.07 3.86 5.55 -21.32 -0.12 3.75 16 16 C -0.50 -28.37 9.05 23.47 0.21 -28.16 16 17 H 0.09 4.49 7.90 -2.91 -0.02 4.47 16 18 C 0.03 1.54 5.15 85.25 0.44 1.98 16 19 N -0.83 -48.71 11.05 21.83 0.24 -48.47 16 20 Si 0.98 41.10 29.59 68.60 2.03 43.13 16 21 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 22 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 23 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 24 C -0.13 -7.70 8.21 23.01 0.19 -7.51 16 25 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.04 1.32 7.29 -2.39 -0.02 1.31 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.09 1.69 6.64 -2.38 -0.02 1.67 16 31 H 0.02 0.69 7.16 -2.39 -0.02 0.68 16 32 H 0.10 1.62 5.77 -2.39 -0.01 1.60 16 33 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.11 1.82 8.13 -2.39 -0.02 1.80 16 35 H 0.09 1.90 6.74 -2.38 -0.02 1.88 16 36 H 0.15 4.67 4.15 -2.91 -0.01 4.66 16 37 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 38 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 39 H 0.29 15.46 8.30 -92.71 -0.77 14.69 16 40 H 0.09 5.97 5.91 -2.91 -0.02 5.95 16 Total: -1.00 -76.19 321.53 4.81 -71.38 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 1.04 Total: 25.98 kcal Atomic # 6 Polarization: -38.65 SS G_CDS: 4.03 Total: -34.62 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -2.22 Total: -72.72 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -0.06 Total: -33.15 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -76.19 4.81 -71.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334398910.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.440 kcal (2) G-P(sol) polarization free energy of solvation -76.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds