Wall clock time and date at job start Mon Mar 30 2020 01:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46819 * 2 1 4 4 C 1.52999 * 110.37802 * 302.41250 * 3 2 1 5 5 C 1.53004 * 109.47358 * 187.48737 * 4 3 2 6 6 C 1.53752 * 110.42819 * 64.80022 * 3 2 1 7 7 N 1.46526 * 105.19442 * 118.76083 * 6 3 2 8 8 C 1.34779 * 124.93645 * 179.97438 * 7 6 3 9 9 O 1.21748 * 119.99762 * 174.78998 * 8 7 6 10 10 C 1.46169 * 120.00492 * 354.79261 * 8 7 6 11 11 H 1.08000 * 119.99708 * 5.15551 * 10 8 7 12 12 C 1.40123 * 120.00592 * 185.15580 * 10 8 7 13 13 N 1.30638 * 119.99366 * 359.97438 * 12 10 8 14 14 Si 1.86793 * 120.00350 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47016 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47421 * 120.00314 * 14 12 10 17 17 H 1.48507 * 109.47172 * 240.00256 * 14 12 10 18 18 C 1.39419 * 110.12213 * 359.97438 * 7 6 3 19 19 C 1.39793 * 129.33727 * 179.97438 * 18 7 6 20 20 C 1.37793 * 120.26782 * 180.02562 * 19 18 7 21 21 C 1.38342 * 120.24342 * 359.97438 * 20 19 18 22 22 C 1.38280 * 119.84997 * 0.02562 * 21 20 19 23 23 C 1.38120 * 120.15894 * 359.97438 * 22 21 20 24 24 H 1.09000 * 109.47458 * 55.23078 * 1 2 3 25 25 H 1.09005 * 109.46632 * 175.22318 * 1 2 3 26 26 H 1.09001 * 109.47485 * 295.22240 * 1 2 3 27 27 H 1.09000 * 109.47485 * 239.99748 * 2 1 3 28 28 H 1.09003 * 109.47020 * 119.99529 * 2 1 3 29 29 H 1.09006 * 109.47437 * 307.48494 * 4 3 2 30 30 H 1.08994 * 109.47519 * 67.48651 * 4 3 2 31 31 H 1.08993 * 109.47224 * 185.07780 * 5 4 3 32 32 H 1.08997 * 109.46689 * 305.07601 * 5 4 3 33 33 H 1.09001 * 109.46610 * 65.07112 * 5 4 3 34 34 H 1.08996 * 110.29821 * 359.82811 * 6 3 2 35 35 H 1.09000 * 110.29417 * 237.69075 * 6 3 2 36 36 H 0.97005 * 119.99552 * 179.97438 * 13 12 10 37 37 H 1.08000 * 119.86710 * 0.02562 * 19 18 7 38 38 H 1.07994 * 119.87690 * 180.02562 * 20 19 18 39 39 H 1.08000 * 120.07837 * 180.02562 * 21 20 19 40 40 H 1.08003 * 119.92535 * 179.72653 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.4927 2.2011 -1.2108 5 6 2.1583 3.5762 -1.2948 6 6 1.6404 2.1530 1.3037 7 7 2.9059 2.5240 1.9423 8 6 3.0158 3.1730 3.1184 9 8 4.1132 3.3534 3.6138 10 6 1.8176 3.6601 3.7992 11 1 0.8398 3.4283 3.4035 12 6 1.9375 4.4278 4.9653 13 7 3.1202 4.7078 5.4442 14 14 0.4062 5.0497 5.8357 15 1 -0.8006 4.5984 5.0973 16 1 0.3704 4.5120 7.2194 17 1 0.4313 6.5339 5.8819 18 6 3.9797 2.1082 1.1563 19 6 5.3516 2.2541 1.3816 20 6 6.2612 1.7664 0.4686 21 6 5.8235 1.1280 -0.6780 22 6 4.4681 0.9796 -0.9084 23 6 3.5519 1.4665 0.0033 24 1 -0.3634 0.5860 -0.8442 25 1 -0.3633 -1.0242 -0.0856 26 1 -0.3634 0.4379 0.9297 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.7063 1.6380 -2.1194 30 1 0.4149 2.3251 -1.1052 31 1 1.7046 4.1508 -2.1022 32 1 2.0211 4.1044 -0.3513 33 1 3.2235 3.4527 -1.4905 34 1 1.0770 1.4760 1.9459 35 1 1.0522 3.0440 1.0838 36 1 3.2032 5.2396 6.2512 37 1 5.7001 2.7511 2.2749 38 1 7.3196 1.8822 0.6493 39 1 6.5387 0.7463 -1.3916 40 1 4.1250 0.4853 -1.8053 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334774676.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:03 Heat of formation + Delta-G solvation = -22.419994 kcal Electronic energy + Delta-G solvation = -21819.908811 eV Core-core repulsion = 18791.774317 eV Total energy + Delta-G solvation = -3028.134494 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.66615 -36.99873 -36.63068 -33.84211 -32.63274 -31.63723 -30.07438 -29.29676 -27.24409 -26.32340 -24.21185 -22.73476 -22.42635 -21.37642 -19.50835 -18.57560 -16.94521 -15.84711 -15.49196 -15.34336 -15.14441 -14.55954 -14.16035 -14.05972 -13.44106 -13.26374 -13.19404 -12.93108 -12.44113 -12.22175 -11.85152 -11.73379 -11.67157 -11.52648 -11.40073 -11.27858 -11.11310 -11.00437 -10.75638 -10.56875 -10.33430 -10.29443 -10.17764 -9.90949 -9.33419 -8.95099 -8.18884 -7.82908 -6.75626 -6.40732 -4.86048 1.99724 2.13130 3.02957 3.11130 3.15582 3.91572 4.23552 4.25991 4.51839 4.81981 4.90460 5.11925 5.25997 5.42360 5.48797 5.56019 5.59207 5.62423 5.68390 5.78360 5.91967 5.93101 5.96234 6.08352 6.16307 6.19914 6.23433 6.33835 6.35338 6.37618 6.50936 6.56126 6.64133 6.66528 6.94576 7.09846 7.22669 7.24235 7.32898 7.63536 7.98334 8.27437 8.80319 9.12006 10.30473 10.50833 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.017836 B = 0.006993 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.489500 B = 4002.807704 C = 4991.860397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.104 4.104 3 C -0.022 4.022 4 C -0.101 4.101 5 C -0.153 4.153 6 C 0.124 3.876 7 N -0.564 5.564 8 C 0.552 3.448 9 O -0.554 6.554 10 C -0.531 4.531 11 H 0.074 0.926 12 C 0.086 3.914 13 N -0.758 5.758 14 Si 0.912 3.088 15 H -0.262 1.262 16 H -0.274 1.274 17 H -0.274 1.274 18 C 0.195 3.805 19 C -0.153 4.153 20 C -0.092 4.092 21 C -0.181 4.181 22 C -0.073 4.073 23 C -0.156 4.156 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.272 0.728 37 H 0.138 0.862 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.844 -6.078 -11.740 13.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.142 4.142 3 C -0.023 4.023 4 C -0.139 4.139 5 C -0.211 4.211 6 C 0.000 4.000 7 N -0.285 5.285 8 C 0.361 3.639 9 O -0.435 6.435 10 C -0.567 4.567 11 H 0.092 0.908 12 C -0.136 4.136 13 N -0.387 5.387 14 Si 0.736 3.264 15 H -0.185 1.185 16 H -0.199 1.199 17 H -0.199 1.199 18 C 0.093 3.907 19 C -0.175 4.175 20 C -0.111 4.111 21 C -0.201 4.201 22 C -0.092 4.092 23 C -0.160 4.160 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.156 0.844 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.254 -5.769 -11.102 12.927 hybrid contribution -0.720 0.323 0.469 0.918 sum -3.973 -5.445 -10.633 12.590 Atomic orbital electron populations 1.21888 0.95832 1.01325 1.02306 1.21526 0.95560 0.94926 1.02147 1.20130 0.91420 0.95430 0.95311 1.21528 0.99569 0.96120 0.96644 1.21816 1.01044 0.96524 1.01674 1.21960 0.87431 0.98798 0.91798 1.46550 1.03684 1.56674 1.21601 1.18322 0.91081 0.77302 0.77204 1.90606 1.28975 1.59527 1.64408 1.20913 0.91966 1.34142 1.09669 0.90796 1.25770 0.96937 0.94443 0.96406 1.69989 1.23555 1.27284 1.17825 0.86228 0.81788 0.78911 0.79452 1.18534 1.19892 1.19912 1.18647 0.89697 0.92206 0.90105 1.21057 0.90501 1.04137 1.01784 1.20798 0.98666 0.97677 0.93975 1.20703 0.94919 1.05434 0.99042 1.20099 0.92192 0.99258 0.97644 1.19813 0.94089 1.05535 0.96599 0.92359 0.93025 0.92280 0.91903 0.91786 0.92037 0.91597 0.93401 0.92198 0.92436 0.91189 0.90934 0.91689 0.84400 0.86777 0.87060 0.87293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.39 37.16 0.35 -1.40 16 2 C -0.10 -1.37 4.89 -26.73 -0.13 -1.50 16 3 C -0.02 -0.35 0.58 -155.01 -0.09 -0.44 16 4 C -0.10 -1.33 4.33 -26.73 -0.12 -1.45 16 5 C -0.15 -2.25 9.27 37.16 0.34 -1.91 16 6 C 0.12 2.32 4.49 -3.64 -0.02 2.30 16 7 N -0.56 -13.27 3.12 -114.54 -0.36 -13.63 16 8 C 0.55 15.61 7.70 -13.08 -0.10 15.51 16 9 O -0.55 -17.50 13.21 5.15 0.07 -17.43 16 10 C -0.53 -14.55 9.04 -35.69 -0.32 -14.87 16 11 H 0.07 1.85 7.11 -52.49 -0.37 1.48 16 12 C 0.09 2.31 5.50 -17.35 -0.10 2.21 16 13 N -0.76 -21.97 11.84 55.55 0.66 -21.31 16 14 Si 0.91 19.43 29.56 -169.99 -5.02 14.40 16 15 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 16 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 17 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 18 C 0.19 4.25 6.62 -83.65 -0.55 3.69 16 19 C -0.15 -3.34 9.46 -39.16 -0.37 -3.71 16 20 C -0.09 -1.63 10.02 -39.71 -0.40 -2.03 16 21 C -0.18 -2.83 10.06 -39.53 -0.40 -3.23 16 22 C -0.07 -1.15 9.94 -39.61 -0.39 -1.54 16 23 C -0.16 -2.77 3.37 -104.23 -0.35 -3.12 16 24 H 0.06 0.59 6.37 -51.93 -0.33 0.26 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.70 6.95 -51.93 -0.36 0.34 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.78 6.80 -51.93 -0.35 0.43 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.02 6.72 -51.93 -0.35 0.67 16 33 H 0.06 0.91 7.17 -51.93 -0.37 0.54 16 34 H 0.07 1.28 6.71 -51.93 -0.35 0.94 16 35 H 0.07 1.33 6.75 -51.93 -0.35 0.98 16 36 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 37 H 0.14 3.41 6.28 -52.49 -0.33 3.08 16 38 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 40 H 0.11 1.42 8.06 -52.48 -0.42 0.99 16 LS Contribution 317.76 15.07 4.79 4.79 Total: -1.00 -31.89 317.76 -8.20 -40.08 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -5.69 Total: 4.58 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -2.64 Total: -11.49 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.30 Total: -34.94 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: 0.07 Total: -17.43 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.89 -8.20 -40.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334774676.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.663 kcal (2) G-P(sol) polarization free energy of solvation -31.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds