Wall clock time and date at job start Mon Mar 30 2020 01:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46819 * 2 1 4 4 C 1.52999 * 110.37802 * 302.41250 * 3 2 1 5 5 C 1.53004 * 109.47358 * 187.48737 * 4 3 2 6 6 C 1.53752 * 110.42819 * 64.80022 * 3 2 1 7 7 N 1.46526 * 105.19442 * 118.76083 * 6 3 2 8 8 C 1.34779 * 124.93645 * 179.97438 * 7 6 3 9 9 O 1.21748 * 119.99762 * 174.78998 * 8 7 6 10 10 C 1.46169 * 120.00492 * 354.79261 * 8 7 6 11 11 H 1.08000 * 119.99708 * 5.15551 * 10 8 7 12 12 C 1.40123 * 120.00592 * 185.15580 * 10 8 7 13 13 N 1.30638 * 119.99366 * 359.97438 * 12 10 8 14 14 Si 1.86793 * 120.00350 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47016 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47421 * 120.00314 * 14 12 10 17 17 H 1.48507 * 109.47172 * 240.00256 * 14 12 10 18 18 C 1.39419 * 110.12213 * 359.97438 * 7 6 3 19 19 C 1.39793 * 129.33727 * 179.97438 * 18 7 6 20 20 C 1.37793 * 120.26782 * 180.02562 * 19 18 7 21 21 C 1.38342 * 120.24342 * 359.97438 * 20 19 18 22 22 C 1.38280 * 119.84997 * 0.02562 * 21 20 19 23 23 C 1.38120 * 120.15894 * 359.97438 * 22 21 20 24 24 H 1.09000 * 109.47458 * 55.23078 * 1 2 3 25 25 H 1.09005 * 109.46632 * 175.22318 * 1 2 3 26 26 H 1.09001 * 109.47485 * 295.22240 * 1 2 3 27 27 H 1.09000 * 109.47485 * 239.99748 * 2 1 3 28 28 H 1.09003 * 109.47020 * 119.99529 * 2 1 3 29 29 H 1.09006 * 109.47437 * 307.48494 * 4 3 2 30 30 H 1.08994 * 109.47519 * 67.48651 * 4 3 2 31 31 H 1.08993 * 109.47224 * 185.07780 * 5 4 3 32 32 H 1.08997 * 109.46689 * 305.07601 * 5 4 3 33 33 H 1.09001 * 109.46610 * 65.07112 * 5 4 3 34 34 H 1.08996 * 110.29821 * 359.82811 * 6 3 2 35 35 H 1.09000 * 110.29417 * 237.69075 * 6 3 2 36 36 H 0.97005 * 119.99552 * 179.97438 * 13 12 10 37 37 H 1.08000 * 119.86710 * 0.02562 * 19 18 7 38 38 H 1.07994 * 119.87690 * 180.02562 * 20 19 18 39 39 H 1.08000 * 120.07837 * 180.02562 * 21 20 19 40 40 H 1.08003 * 119.92535 * 179.72653 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.4927 2.2011 -1.2108 5 6 2.1583 3.5762 -1.2948 6 6 1.6404 2.1530 1.3037 7 7 2.9059 2.5240 1.9423 8 6 3.0158 3.1730 3.1184 9 8 4.1132 3.3534 3.6138 10 6 1.8176 3.6601 3.7992 11 1 0.8398 3.4283 3.4035 12 6 1.9375 4.4278 4.9653 13 7 3.1202 4.7078 5.4442 14 14 0.4062 5.0497 5.8357 15 1 -0.8006 4.5984 5.0973 16 1 0.3704 4.5120 7.2194 17 1 0.4313 6.5339 5.8819 18 6 3.9797 2.1082 1.1563 19 6 5.3516 2.2541 1.3816 20 6 6.2612 1.7664 0.4686 21 6 5.8235 1.1280 -0.6780 22 6 4.4681 0.9796 -0.9084 23 6 3.5519 1.4665 0.0033 24 1 -0.3634 0.5860 -0.8442 25 1 -0.3633 -1.0242 -0.0856 26 1 -0.3634 0.4379 0.9297 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.7063 1.6380 -2.1194 30 1 0.4149 2.3251 -1.1052 31 1 1.7046 4.1508 -2.1022 32 1 2.0211 4.1044 -0.3513 33 1 3.2235 3.4527 -1.4905 34 1 1.0770 1.4760 1.9459 35 1 1.0522 3.0440 1.0838 36 1 3.2032 5.2396 6.2512 37 1 5.7001 2.7511 2.2749 38 1 7.3196 1.8822 0.6493 39 1 6.5387 0.7463 -1.3916 40 1 4.1250 0.4853 -1.8053 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334774676.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:02 Heat of formation + Delta-G solvation = -41.403222 kcal Electronic energy + Delta-G solvation = -21820.731985 eV Core-core repulsion = 18791.774317 eV Total energy + Delta-G solvation = -3028.957668 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.14359 -38.92818 -37.96817 -35.52393 -34.71040 -32.68777 -31.45795 -30.90417 -28.65984 -28.25576 -25.56504 -24.04745 -23.78852 -22.79237 -21.27478 -19.88325 -18.79570 -17.76762 -17.12165 -16.76931 -16.48111 -16.22529 -15.46099 -15.28698 -14.96540 -14.82204 -14.70513 -14.33947 -14.04729 -13.45058 -13.38996 -13.27722 -13.11599 -12.86668 -12.81476 -12.69751 -12.64679 -12.49326 -12.24841 -12.03933 -11.87604 -11.47149 -11.36075 -11.15490 -11.10111 -10.81902 -9.96356 -9.60332 -8.44835 -8.43319 -7.00751 0.56799 0.63461 1.33968 1.34912 1.53104 2.14135 2.30983 2.58776 2.97320 3.46679 3.55536 3.62590 4.00792 4.06414 4.24813 4.27254 4.41938 4.52269 4.54724 4.59725 4.63052 4.69318 4.76831 4.81181 4.85723 5.00256 5.08542 5.13804 5.17602 5.20058 5.23429 5.27517 5.41234 5.42812 5.49044 5.57226 5.66830 5.76239 5.80850 5.91456 6.16396 6.48235 6.70289 7.18758 8.23324 8.49769 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.017836 B = 0.006993 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.489500 B = 4002.807704 C = 4991.860397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.099 4.099 3 C -0.015 4.015 4 C -0.094 4.094 5 C -0.151 4.151 6 C 0.119 3.881 7 N -0.577 5.577 8 C 0.533 3.467 9 O -0.608 6.608 10 C -0.556 4.556 11 H 0.091 0.909 12 C 0.028 3.972 13 N -0.814 5.814 14 Si 1.002 2.998 15 H -0.243 1.243 16 H -0.266 1.266 17 H -0.265 1.265 18 C 0.143 3.857 19 C -0.191 4.191 20 C -0.096 4.096 21 C -0.160 4.160 22 C -0.068 4.068 23 C -0.141 4.141 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.044 0.956 27 H 0.089 0.911 28 H 0.040 0.960 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.022 0.978 33 H 0.041 0.959 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.279 0.721 37 H 0.087 0.913 38 H 0.134 0.866 39 H 0.157 0.843 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.025 -7.795 -15.282 18.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.136 4.136 3 C -0.016 4.016 4 C -0.132 4.132 5 C -0.208 4.208 6 C -0.003 4.003 7 N -0.299 5.299 8 C 0.343 3.657 9 O -0.494 6.494 10 C -0.592 4.592 11 H 0.109 0.891 12 C -0.188 4.188 13 N -0.443 5.443 14 Si 0.820 3.180 15 H -0.166 1.166 16 H -0.190 1.190 17 H -0.190 1.190 18 C 0.044 3.956 19 C -0.213 4.213 20 C -0.114 4.114 21 C -0.179 4.179 22 C -0.086 4.086 23 C -0.145 4.145 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.063 0.937 27 H 0.108 0.892 28 H 0.059 0.941 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.041 0.959 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.152 0.848 39 H 0.175 0.825 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.437 -7.525 -14.713 17.397 hybrid contribution 0.099 0.795 1.447 1.654 sum -5.339 -6.731 -13.266 15.805 Atomic orbital electron populations 1.21875 0.94062 1.02726 1.02371 1.21510 0.97077 0.92750 1.02310 1.20213 0.89934 0.97061 0.94358 1.21558 1.00377 0.94818 0.96402 1.21784 1.00567 0.97840 1.00604 1.22188 0.85660 0.98969 0.93458 1.46251 1.06088 1.56593 1.20949 1.18731 0.90804 0.77564 0.78637 1.90553 1.30554 1.61765 1.66550 1.21399 0.92429 1.34744 1.10603 0.89105 1.27090 1.00983 0.93925 0.96830 1.70160 1.26910 1.28463 1.18758 0.84913 0.76799 0.78355 0.77957 1.16587 1.19021 1.18963 1.19030 0.89359 0.95041 0.92146 1.20962 0.92051 1.06458 1.01813 1.21044 0.98991 0.97375 0.94039 1.21233 0.96053 1.02603 0.98013 1.20646 0.91757 0.97944 0.98237 1.20182 0.95839 1.03538 0.94924 0.90525 0.91290 0.93711 0.89213 0.94089 0.88760 0.89636 0.90883 0.95852 0.93947 0.91580 0.91252 0.91111 0.89431 0.84799 0.82525 0.82614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.39 71.98 0.68 -2.20 16 2 C -0.10 -2.30 4.89 30.59 0.15 -2.15 16 3 C -0.02 -0.44 0.58 -52.51 -0.03 -0.47 16 4 C -0.09 -2.13 4.33 30.60 0.13 -2.00 16 5 C -0.15 -4.17 9.27 71.98 0.67 -3.50 16 6 C 0.12 4.60 4.49 86.63 0.39 4.98 16 7 N -0.58 -29.10 3.12 -634.49 -1.98 -31.08 16 8 C 0.53 32.74 7.70 86.30 0.66 33.41 16 9 O -0.61 -42.39 13.21 -4.50 -0.06 -42.45 16 10 C -0.56 -32.20 9.04 24.79 0.22 -31.98 16 11 H 0.09 4.72 7.11 -2.91 -0.02 4.70 16 12 C 0.03 1.56 5.50 85.33 0.47 2.03 16 13 N -0.81 -50.21 11.84 21.85 0.26 -49.95 16 14 Si 1.00 40.78 29.56 68.60 2.03 42.80 16 15 H -0.24 -9.06 7.11 99.48 0.71 -8.35 16 16 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 17 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 18 C 0.14 6.58 6.62 38.43 0.25 6.84 16 19 C -0.19 -9.00 9.46 22.54 0.21 -8.79 16 20 C -0.10 -3.40 10.02 22.19 0.22 -3.17 16 21 C -0.16 -4.42 10.06 22.30 0.22 -4.20 16 22 C -0.07 -1.85 9.94 22.25 0.22 -1.62 16 23 C -0.14 -4.82 3.37 -19.61 -0.07 -4.89 16 24 H 0.08 1.17 6.37 -2.39 -0.02 1.16 16 25 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.04 0.97 6.95 -2.39 -0.02 0.95 16 27 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.09 1.65 6.80 -2.39 -0.02 1.63 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.02 0.79 6.72 -2.39 -0.02 0.78 16 33 H 0.04 1.27 7.17 -2.39 -0.02 1.26 16 34 H 0.07 2.51 6.71 -2.39 -0.02 2.50 16 35 H 0.07 2.63 6.75 -2.39 -0.02 2.62 16 36 H 0.28 15.43 8.29 -92.70 -0.77 14.66 16 37 H 0.09 4.94 6.28 -2.91 -0.02 4.92 16 38 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 39 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 40 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -79.64 317.76 5.69 -73.95 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 1.03 Total: 24.43 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: 4.41 Total: -17.72 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -1.72 Total: -81.02 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -0.06 Total: -42.45 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.80 kcal Total: -79.64 5.69 -73.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334774676.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.548 kcal (2) G-P(sol) polarization free energy of solvation -79.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds