Wall clock time and date at job start Mon Mar 30 2020 02:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.47181 * 2 1 4 4 H 1.09001 * 109.87190 * 308.81432 * 3 2 1 5 5 C 1.54321 * 109.88331 * 187.79797 * 3 2 1 6 6 C 1.55159 * 102.94364 * 218.39002 * 5 3 2 7 7 C 1.54915 * 101.58064 * 35.50205 * 6 5 3 8 8 N 1.47022 * 109.88073 * 69.99023 * 3 2 1 9 9 C 1.34777 * 125.64849 * 298.30870 * 8 3 2 10 10 O 1.21551 * 119.99641 * 1.16589 * 9 8 3 11 11 C 1.47883 * 120.00048 * 181.16656 * 9 8 3 12 12 C 1.39922 * 120.02594 * 338.12601 * 11 9 8 13 13 C 1.38326 * 120.35961 * 179.97438 * 12 11 9 14 14 C 1.37752 * 120.41326 * 0.02623 * 13 12 11 15 15 C 1.40750 * 120.03741 * 359.97438 * 14 13 12 16 16 C 1.41445 * 120.17666 * 180.02562 * 15 14 13 17 17 H 1.07992 * 119.99761 * 32.69978 * 16 15 14 18 18 C 1.39931 * 119.99973 * 212.69734 * 16 15 14 19 19 N 1.30829 * 120.00405 * 6.75107 * 18 16 15 20 20 Si 1.86800 * 120.00024 * 186.75058 * 18 16 15 21 21 H 1.48504 * 109.47193 * 90.00190 * 20 18 16 22 22 H 1.48497 * 109.47146 * 209.99810 * 20 18 16 23 23 H 1.48493 * 109.46998 * 330.00087 * 20 18 16 24 24 C 1.38997 * 120.02715 * 157.85645 * 11 9 8 25 25 H 1.08996 * 109.46793 * 155.38239 * 1 2 3 26 26 H 1.08998 * 109.47225 * 275.38682 * 1 2 3 27 27 H 1.08999 * 109.46820 * 35.39035 * 1 2 3 28 28 H 1.09004 * 109.47053 * 119.99435 * 2 1 3 29 29 H 1.09001 * 109.47291 * 240.00011 * 2 1 3 30 30 H 1.09008 * 110.71875 * 336.75155 * 5 3 2 31 31 H 1.08998 * 110.72444 * 100.02139 * 5 3 2 32 32 H 1.08994 * 111.00367 * 153.57469 * 6 5 3 33 33 H 1.08992 * 110.99937 * 277.38965 * 6 5 3 34 34 H 1.08998 * 110.36862 * 81.82758 * 7 6 5 35 35 H 1.09001 * 110.36117 * 204.04643 * 7 6 5 36 36 H 1.07998 * 119.81859 * 0.02562 * 12 11 9 37 37 H 1.07995 * 119.79589 * 179.97438 * 13 12 11 38 38 H 1.08001 * 119.98193 * 180.02562 * 14 13 12 39 39 H 0.96998 * 120.00475 * 180.02562 * 19 18 16 40 40 H 1.07998 * 120.20065 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.5578 2.0061 -0.7987 5 6 3.5706 1.4581 -0.1969 6 6 4.0304 2.6031 0.7438 7 6 3.0401 2.4514 1.9254 8 7 1.7607 2.0716 1.2991 9 6 0.5374 2.2694 1.8293 10 8 -0.4521 1.8960 1.2302 11 6 0.3991 2.9407 3.1397 12 6 1.4765 2.9627 4.0322 13 6 1.3549 3.5891 5.2595 14 6 0.1723 4.1979 5.6176 15 6 -0.9224 4.1860 4.7329 16 6 -2.1379 4.8107 5.0974 17 1 -2.1262 5.6917 5.7217 18 6 -3.3556 4.2870 4.6489 19 7 -3.3806 3.1485 4.0049 20 14 -4.9456 5.2135 4.9698 21 1 -5.2139 6.1417 3.8421 22 1 -6.0659 4.2466 5.0922 23 1 -4.8209 5.9888 6.2301 24 6 -0.7993 3.5552 3.4834 25 1 -0.3633 -0.9342 -0.4281 26 1 -0.3633 0.0965 1.0231 27 1 -0.3633 0.8378 -0.5952 28 1 1.8934 -0.5138 0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 4.0085 0.5080 0.1094 31 1 3.8240 1.6846 -1.2325 32 1 5.0580 2.4493 1.0731 33 1 3.9181 3.5739 0.2613 34 1 3.3771 1.6684 2.6047 35 1 2.9377 3.3968 2.4583 36 1 2.4083 2.4887 3.7611 37 1 2.1921 3.6002 5.9416 38 1 0.0851 4.6853 6.5775 39 1 -4.2246 2.7857 3.6937 40 1 -1.6319 3.5448 2.7956 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336469993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:27 Heat of formation + Delta-G solvation = -2.727643 kcal Electronic energy + Delta-G solvation = -21347.114269 eV Core-core repulsion = 18319.833700 eV Total energy + Delta-G solvation = -3027.280570 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.04454 -37.54496 -36.61172 -33.83891 -33.01137 -31.42807 -29.74941 -29.40454 -27.90015 -25.27002 -24.06227 -22.61900 -21.53810 -20.74418 -20.32322 -18.63174 -17.50513 -16.40346 -15.91731 -15.40897 -14.80290 -14.61881 -14.25252 -13.69615 -13.41771 -13.20770 -12.93867 -12.90623 -12.72202 -12.50549 -12.23709 -11.85546 -11.64047 -11.36250 -11.16911 -11.11637 -10.90369 -10.75176 -10.60935 -10.51610 -10.28723 -10.19088 -9.85146 -9.54325 -9.22712 -8.72442 -8.08431 -7.58364 -7.39104 -6.66354 -4.40347 2.27239 2.84029 3.11035 3.13501 3.16706 3.48675 3.84125 3.97928 4.60497 4.64242 4.68682 4.91106 5.23679 5.35748 5.45763 5.56470 5.58052 5.58571 5.72045 5.75644 5.90028 5.95376 6.08239 6.13414 6.16778 6.24160 6.32758 6.38977 6.61860 6.67299 6.85533 7.03548 7.06796 7.08901 7.26830 7.42352 7.70004 7.82643 7.94142 8.12825 8.21485 8.54451 8.86440 8.87440 9.00350 10.28367 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.023682 B = 0.005423 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.030625 B = 5161.518655 C = 6048.324041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.137 3.863 4 H 0.070 0.930 5 C -0.129 4.129 6 C -0.138 4.138 7 C 0.098 3.902 8 N -0.616 5.616 9 C 0.570 3.430 10 O -0.525 6.525 11 C -0.126 4.126 12 C -0.224 4.224 13 C -0.106 4.106 14 C -0.202 4.202 15 C 0.099 3.901 16 C -0.468 4.468 17 H 0.078 0.922 18 C 0.071 3.929 19 N -0.798 5.798 20 Si 0.913 3.087 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.084 4.084 25 H 0.027 0.973 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.282 0.718 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.472 -2.524 -6.076 13.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C 0.033 3.967 4 H 0.088 0.912 5 C -0.167 4.167 6 C -0.176 4.176 7 C -0.025 4.025 8 N -0.352 5.352 9 C 0.363 3.637 10 O -0.403 6.403 11 C -0.130 4.130 12 C -0.244 4.244 13 C -0.125 4.125 14 C -0.222 4.222 15 C 0.097 3.903 16 C -0.498 4.498 17 H 0.096 0.904 18 C -0.146 4.146 19 N -0.423 5.423 20 Si 0.738 3.262 21 H -0.194 1.194 22 H -0.203 1.203 23 H -0.187 1.187 24 C -0.104 4.104 25 H 0.046 0.954 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.128 0.872 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.093 0.907 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 10.659 -2.885 -6.473 12.800 hybrid contribution -0.681 0.222 0.233 0.753 sum 9.978 -2.663 -6.240 12.066 Atomic orbital electron populations 1.22153 0.93835 0.99409 1.04533 1.21930 0.97989 0.95539 1.01154 1.21647 0.94652 0.93748 0.86646 0.91172 1.22705 0.94382 0.99342 1.00226 1.22863 0.99066 0.99077 0.96586 1.22673 0.83257 1.01350 0.95208 1.48422 1.05760 1.61278 1.19705 1.18549 0.81091 0.78264 0.85779 1.90762 1.37287 1.49543 1.62707 1.19478 0.96464 1.03822 0.93199 1.21117 0.98089 1.08589 0.96572 1.20490 0.96780 0.99441 0.95763 1.21230 0.95116 1.06827 0.99032 1.17605 0.92365 0.90500 0.89855 1.19520 0.90015 1.11713 1.28538 0.90351 1.25902 1.01202 0.94353 0.93166 1.69755 1.28886 1.15432 1.28256 0.86238 0.80414 0.79864 0.79730 1.19386 1.20278 1.18727 1.21610 0.94391 0.97787 0.96602 0.95433 0.90215 0.92032 0.92269 0.92070 0.90704 0.90511 0.90206 0.90725 0.91655 0.88863 0.87189 0.88930 0.88630 0.90690 0.85139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.10 37.16 0.30 -2.17 16 2 C -0.13 -1.82 5.41 -26.73 -0.14 -1.97 16 3 C 0.14 1.95 3.05 -66.95 -0.20 1.75 16 4 H 0.07 1.06 7.93 -51.93 -0.41 0.65 16 5 C -0.13 -1.32 6.47 -24.90 -0.16 -1.48 16 6 C -0.14 -1.42 7.09 -24.58 -0.17 -1.59 16 7 C 0.10 1.35 4.97 -2.53 -0.01 1.33 16 8 N -0.62 -10.58 3.06 -164.10 -0.50 -11.08 16 9 C 0.57 12.51 7.28 -12.31 -0.09 12.42 16 10 O -0.53 -12.75 11.47 5.32 0.06 -12.69 16 11 C -0.13 -3.00 5.76 -105.04 -0.60 -3.60 16 12 C -0.22 -4.70 8.02 -38.92 -0.31 -5.02 16 13 C -0.11 -2.26 10.01 -39.73 -0.40 -2.66 16 14 C -0.20 -4.81 9.78 -38.81 -0.38 -5.19 16 15 C 0.10 2.63 5.51 -106.87 -0.59 2.05 16 16 C -0.47 -12.44 9.05 -37.73 -0.34 -12.79 16 17 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 18 C 0.07 1.82 5.30 -17.35 -0.09 1.73 16 19 N -0.80 -21.64 10.93 55.55 0.61 -21.04 16 20 Si 0.91 19.21 29.56 -169.99 -5.03 14.19 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 24 C -0.08 -2.24 8.17 -38.44 -0.31 -2.55 16 25 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 1.67 5.79 -51.93 -0.30 1.37 16 27 H 0.06 1.15 6.82 -51.93 -0.35 0.79 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.70 7.85 -51.92 -0.41 0.29 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.85 7.27 -51.93 -0.38 0.47 16 35 H 0.09 1.37 6.07 -51.93 -0.32 1.06 16 36 H 0.11 1.94 4.10 -52.49 -0.22 1.72 16 37 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 39 H 0.28 7.09 8.30 -40.82 -0.34 6.75 16 40 H 0.13 3.78 6.15 -52.49 -0.32 3.46 16 LS Contribution 313.41 15.07 4.72 4.72 Total: -1.00 -29.28 313.41 -9.29 -38.57 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.63 Total: 7.06 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -3.52 Total: -19.74 kcal Atomic # 7 Polarization: -32.22 SS G_CDS: 0.10 Total: -32.12 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.06 Total: -12.69 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.28 -9.29 -38.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336469993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.844 kcal (2) G-P(sol) polarization free energy of solvation -29.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds