Wall clock time and date at job start Mon Mar 30 2020 02:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.47181 * 2 1 4 4 H 1.09001 * 109.87190 * 308.81432 * 3 2 1 5 5 C 1.54321 * 109.88331 * 187.79797 * 3 2 1 6 6 C 1.55159 * 102.94364 * 218.39002 * 5 3 2 7 7 C 1.54915 * 101.58064 * 35.50205 * 6 5 3 8 8 N 1.47022 * 109.88073 * 69.99023 * 3 2 1 9 9 C 1.34777 * 125.64849 * 298.30870 * 8 3 2 10 10 O 1.21551 * 119.99641 * 1.16589 * 9 8 3 11 11 C 1.47883 * 120.00048 * 181.16656 * 9 8 3 12 12 C 1.39922 * 120.02594 * 338.12601 * 11 9 8 13 13 C 1.38326 * 120.35961 * 179.97438 * 12 11 9 14 14 C 1.37752 * 120.41326 * 0.02623 * 13 12 11 15 15 C 1.40750 * 120.03741 * 359.97438 * 14 13 12 16 16 C 1.41445 * 120.17666 * 180.02562 * 15 14 13 17 17 H 1.07992 * 119.99761 * 32.69978 * 16 15 14 18 18 C 1.39931 * 119.99973 * 212.69734 * 16 15 14 19 19 N 1.30829 * 120.00405 * 6.75107 * 18 16 15 20 20 Si 1.86800 * 120.00024 * 186.75058 * 18 16 15 21 21 H 1.48504 * 109.47193 * 90.00190 * 20 18 16 22 22 H 1.48497 * 109.47146 * 209.99810 * 20 18 16 23 23 H 1.48493 * 109.46998 * 330.00087 * 20 18 16 24 24 C 1.38997 * 120.02715 * 157.85645 * 11 9 8 25 25 H 1.08996 * 109.46793 * 155.38239 * 1 2 3 26 26 H 1.08998 * 109.47225 * 275.38682 * 1 2 3 27 27 H 1.08999 * 109.46820 * 35.39035 * 1 2 3 28 28 H 1.09004 * 109.47053 * 119.99435 * 2 1 3 29 29 H 1.09001 * 109.47291 * 240.00011 * 2 1 3 30 30 H 1.09008 * 110.71875 * 336.75155 * 5 3 2 31 31 H 1.08998 * 110.72444 * 100.02139 * 5 3 2 32 32 H 1.08994 * 111.00367 * 153.57469 * 6 5 3 33 33 H 1.08992 * 110.99937 * 277.38965 * 6 5 3 34 34 H 1.08998 * 110.36862 * 81.82758 * 7 6 5 35 35 H 1.09001 * 110.36117 * 204.04643 * 7 6 5 36 36 H 1.07998 * 119.81859 * 0.02562 * 12 11 9 37 37 H 1.07995 * 119.79589 * 179.97438 * 13 12 11 38 38 H 1.08001 * 119.98193 * 180.02562 * 14 13 12 39 39 H 0.96998 * 120.00475 * 180.02562 * 19 18 16 40 40 H 1.07998 * 120.20065 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.5578 2.0061 -0.7987 5 6 3.5706 1.4581 -0.1969 6 6 4.0304 2.6031 0.7438 7 6 3.0401 2.4514 1.9254 8 7 1.7607 2.0716 1.2991 9 6 0.5374 2.2694 1.8293 10 8 -0.4521 1.8960 1.2302 11 6 0.3991 2.9407 3.1397 12 6 1.4765 2.9627 4.0322 13 6 1.3549 3.5891 5.2595 14 6 0.1723 4.1979 5.6176 15 6 -0.9224 4.1860 4.7329 16 6 -2.1379 4.8107 5.0974 17 1 -2.1262 5.6917 5.7217 18 6 -3.3556 4.2870 4.6489 19 7 -3.3806 3.1485 4.0049 20 14 -4.9456 5.2135 4.9698 21 1 -5.2139 6.1417 3.8421 22 1 -6.0659 4.2466 5.0922 23 1 -4.8209 5.9888 6.2301 24 6 -0.7993 3.5552 3.4834 25 1 -0.3633 -0.9342 -0.4281 26 1 -0.3633 0.0965 1.0231 27 1 -0.3633 0.8378 -0.5952 28 1 1.8934 -0.5138 0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 4.0085 0.5080 0.1094 31 1 3.8240 1.6846 -1.2325 32 1 5.0580 2.4493 1.0731 33 1 3.9181 3.5739 0.2613 34 1 3.3771 1.6684 2.6047 35 1 2.9377 3.3968 2.4583 36 1 2.4083 2.4887 3.7611 37 1 2.1921 3.6002 5.9416 38 1 0.0851 4.6853 6.5775 39 1 -4.2246 2.7857 3.6937 40 1 -1.6319 3.5448 2.7956 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336469993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:26 Heat of formation + Delta-G solvation = -18.998114 kcal Electronic energy + Delta-G solvation = -21347.819810 eV Core-core repulsion = 18319.833700 eV Total energy + Delta-G solvation = -3027.986110 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.47822 -39.19388 -38.19971 -35.64520 -34.39905 -32.73976 -31.49761 -31.20091 -29.10572 -27.16048 -25.45994 -24.07424 -22.95839 -22.27846 -21.68000 -20.13224 -19.23077 -17.73542 -17.51019 -17.18465 -16.51533 -16.27749 -15.52733 -15.07142 -15.04482 -14.61151 -14.49246 -14.25105 -14.13085 -13.90003 -13.55640 -13.46641 -13.11637 -12.92256 -12.85835 -12.52447 -12.46052 -12.28781 -11.86503 -11.81453 -11.62788 -11.55184 -11.47657 -11.18023 -11.12084 -10.40842 -9.57784 -9.36869 -9.27180 -8.57340 -6.41855 0.44233 1.00835 1.35137 1.45410 1.50118 2.07037 2.15177 2.20709 2.81139 3.58358 3.65039 3.67823 3.92398 4.07403 4.23357 4.25132 4.37989 4.46427 4.51960 4.62932 4.67961 4.80559 4.87141 4.95504 4.98690 5.03043 5.10360 5.12558 5.15026 5.19540 5.25144 5.31917 5.42341 5.52160 5.59321 5.66576 5.85947 5.95821 6.05661 6.30415 6.52725 6.66920 6.90696 6.95255 7.36792 8.38830 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.023682 B = 0.005423 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.030625 B = 5161.518655 C = 6048.324041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 C 0.125 3.875 4 H 0.055 0.945 5 C -0.115 4.115 6 C -0.125 4.125 7 C 0.083 3.917 8 N -0.611 5.611 9 C 0.559 3.441 10 O -0.564 6.564 11 C -0.138 4.138 12 C -0.203 4.203 13 C -0.103 4.103 14 C -0.208 4.208 15 C 0.065 3.935 16 C -0.504 4.504 17 H 0.082 0.918 18 C 0.024 3.976 19 N -0.843 5.843 20 Si 0.986 3.014 21 H -0.265 1.265 22 H -0.272 1.272 23 H -0.251 1.251 24 C -0.120 4.120 25 H 0.043 0.957 26 H 0.037 0.963 27 H 0.038 0.962 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.153 0.847 37 H 0.140 0.860 38 H 0.109 0.891 39 H 0.282 0.718 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.191 -2.972 -6.145 16.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.159 4.159 3 C 0.022 3.978 4 H 0.073 0.927 5 C -0.152 4.152 6 C -0.163 4.163 7 C -0.039 4.039 8 N -0.344 5.344 9 C 0.351 3.649 10 O -0.445 6.445 11 C -0.142 4.142 12 C -0.222 4.222 13 C -0.121 4.121 14 C -0.227 4.227 15 C 0.063 3.937 16 C -0.534 4.534 17 H 0.100 0.900 18 C -0.188 4.188 19 N -0.470 5.470 20 Si 0.807 3.193 21 H -0.190 1.190 22 H -0.197 1.197 23 H -0.174 1.174 24 C -0.140 4.140 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.134 0.866 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.170 0.830 37 H 0.158 0.842 38 H 0.127 0.873 39 H 0.092 0.908 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 14.451 -3.328 -6.542 16.208 hybrid contribution -1.623 0.301 0.213 1.664 sum 12.828 -3.026 -6.329 14.621 Atomic orbital electron populations 1.21986 0.96760 0.99194 1.01393 1.21906 0.95143 0.96004 1.02850 1.21965 0.98069 0.93145 0.84623 0.92670 1.22715 0.90262 1.00433 1.01835 1.22853 0.99662 0.99115 0.94669 1.22975 0.82397 1.01279 0.97246 1.48437 1.05326 1.59930 1.20736 1.18417 0.82452 0.78544 0.85532 1.90760 1.39142 1.51150 1.63422 1.19829 0.96269 1.03132 0.94926 1.21653 0.98493 1.06566 0.95486 1.20989 0.97097 0.97634 0.96370 1.21525 0.95306 1.06780 0.99125 1.17954 0.93689 0.91542 0.90476 1.19810 0.91049 1.12545 1.30012 0.90029 1.26830 1.04654 0.94859 0.92459 1.69898 1.29580 1.17368 1.30123 0.85138 0.75781 0.78450 0.79919 1.19033 1.19687 1.17433 1.21371 0.94954 1.00957 0.96738 0.93804 0.94462 0.94337 0.92162 0.88491 0.88675 0.88078 0.86633 0.90833 0.89805 0.89930 0.82993 0.84205 0.87307 0.90760 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.87 8.10 71.98 0.58 -4.29 16 2 C -0.12 -3.23 5.41 30.60 0.17 -3.06 16 3 C 0.12 3.32 3.05 45.34 0.14 3.45 16 4 H 0.06 1.64 7.93 -2.39 -0.02 1.62 16 5 C -0.11 -1.79 6.47 31.78 0.21 -1.59 16 6 C -0.13 -1.95 7.09 31.99 0.23 -1.72 16 7 C 0.08 1.97 4.97 86.86 0.43 2.40 16 8 N -0.61 -20.34 3.06 -791.36 -2.43 -22.77 16 9 C 0.56 25.43 7.28 86.80 0.63 26.07 16 10 O -0.56 -29.47 11.47 -3.88 -0.04 -29.52 16 11 C -0.14 -6.76 5.76 -20.13 -0.12 -6.87 16 12 C -0.20 -8.16 8.02 22.70 0.18 -7.98 16 13 C -0.10 -4.13 10.01 22.18 0.22 -3.90 16 14 C -0.21 -9.88 9.78 22.77 0.22 -9.66 16 15 C 0.07 3.65 5.51 -21.32 -0.12 3.53 16 16 C -0.50 -28.25 9.05 23.47 0.21 -28.03 16 17 H 0.08 4.31 7.85 -2.91 -0.02 4.29 16 18 C 0.02 1.32 5.30 85.25 0.45 1.77 16 19 N -0.84 -49.20 10.93 21.82 0.24 -48.96 16 20 Si 0.99 41.20 29.56 68.60 2.03 43.22 16 21 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 22 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.25 -9.85 7.11 99.48 0.71 -9.15 16 24 C -0.12 -6.83 8.17 23.01 0.19 -6.64 16 25 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.04 1.65 5.79 -2.45 -0.01 1.64 16 27 H 0.04 1.51 6.82 -2.39 -0.02 1.50 16 28 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.09 1.19 7.85 -2.38 -0.02 1.17 16 31 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.08 1.75 7.27 -2.39 -0.02 1.73 16 35 H 0.08 2.17 6.07 -2.39 -0.01 2.15 16 36 H 0.15 4.78 4.10 -2.91 -0.01 4.76 16 37 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 38 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 39 H 0.28 15.30 8.30 -92.71 -0.77 14.54 16 40 H 0.09 5.88 6.15 -2.91 -0.02 5.86 16 Total: -1.00 -71.99 313.41 4.46 -67.53 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 1.04 Total: 27.02 kcal Atomic # 6 Polarization: -40.15 SS G_CDS: 3.63 Total: -36.53 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -2.19 Total: -71.73 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.04 Total: -29.52 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.22 kcal Total: -71.99 4.46 -67.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336469993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.534 kcal (2) G-P(sol) polarization free energy of solvation -71.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds