Wall clock time and date at job start Mon Mar 30 2020 02:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47268 * 2 1 4 4 H 1.08994 * 115.54734 * 29.32548 * 3 2 1 5 5 C 1.53074 * 117.49250 * 243.60562 * 3 2 1 6 6 C 1.52999 * 117.50032 * 175.00025 * 3 2 1 7 7 N 1.46496 * 117.49953 * 359.97438 * 6 3 2 8 8 C 1.34777 * 119.99885 * 149.05671 * 7 6 3 9 9 O 1.21688 * 119.99973 * 4.98865 * 8 7 6 10 10 C 1.46382 * 119.99686 * 184.99092 * 8 7 6 11 11 H 1.07996 * 120.00167 * 0.02562 * 10 8 7 12 12 C 1.40041 * 119.99817 * 179.97438 * 10 8 7 13 13 N 1.30681 * 119.99974 * 359.97438 * 12 10 8 14 14 Si 1.86795 * 120.00259 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47401 * 90.00166 * 14 12 10 16 16 H 1.48497 * 109.47650 * 210.00323 * 14 12 10 17 17 H 1.48497 * 109.47095 * 330.00059 * 14 12 10 18 18 C 1.50701 * 117.49777 * 214.97363 * 6 3 2 19 19 C 1.38265 * 119.99549 * 63.83396 * 18 6 3 20 20 C 1.38206 * 119.99760 * 179.72379 * 19 18 6 21 21 C 1.38266 * 120.00021 * 0.25268 * 20 19 18 22 22 C 1.38208 * 119.99996 * 0.02562 * 21 20 19 23 23 C 1.50700 * 120.00094 * 179.97438 * 22 21 20 24 24 C 1.38205 * 120.00255 * 244.09001 * 18 6 3 25 25 H 1.08998 * 109.46823 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47033 * 299.99949 * 1 2 3 27 27 H 1.09002 * 109.47274 * 60.00398 * 1 2 3 28 28 H 1.09003 * 109.47476 * 239.99549 * 2 1 3 29 29 H 1.09002 * 109.47274 * 119.99602 * 2 1 3 30 30 H 1.08996 * 117.51328 * 145.03329 * 5 3 2 31 31 H 1.09003 * 117.49464 * 359.97438 * 5 3 2 32 32 H 0.97000 * 119.99605 * 329.05202 * 7 6 3 33 33 H 0.97008 * 119.99722 * 179.97438 * 13 12 10 34 34 H 1.07998 * 120.00264 * 359.97438 * 19 18 6 35 35 H 1.07997 * 120.00223 * 180.27799 * 20 19 18 36 36 H 1.07996 * 120.00009 * 180.02562 * 21 20 19 37 37 H 1.08999 * 109.46972 * 90.00081 * 23 22 21 38 38 H 1.09001 * 109.46872 * 210.00062 * 23 22 21 39 39 H 1.08995 * 109.47280 * 330.00212 * 23 22 21 40 40 H 1.08004 * 120.00208 * 0.03931 * 24 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1715 0.4816 5 6 2.8447 1.9075 -1.2163 6 6 3.5502 1.6579 0.1183 7 7 4.3971 0.4672 0.2234 8 6 5.6487 0.4842 -0.2762 9 8 6.1075 1.5146 -0.7329 10 6 6.4560 -0.7368 -0.2696 11 1 6.0486 -1.6514 0.1353 12 6 7.7563 -0.7193 -0.7893 13 7 8.2488 0.3870 -1.2806 14 14 8.7864 -2.2775 -0.7815 15 1 8.5591 -3.0275 -2.0429 16 1 10.2235 -1.9205 -0.6702 17 1 8.3956 -3.1235 0.3746 18 6 4.0228 2.8621 0.8913 19 6 3.7509 2.9662 2.2429 20 6 4.1893 4.0678 2.9531 21 6 4.8952 5.0683 2.3109 22 6 5.1621 4.9669 0.9586 23 6 5.9310 6.0576 0.2584 24 6 4.7234 3.8649 0.2481 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.7225 2.9426 -1.5351 31 1 3.0108 1.1854 -2.0158 32 1 4.0570 -0.3334 0.6527 33 1 9.1496 0.3992 -1.6402 34 1 3.1995 2.1848 2.7446 35 1 3.9808 4.1471 4.0098 36 1 5.2382 5.9289 2.8659 37 1 6.9971 5.8345 0.2998 38 1 5.6122 6.1163 -0.7823 39 1 5.7399 7.0108 0.7513 40 1 4.9317 3.7858 -0.8087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337603922.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:40 Heat of formation + Delta-G solvation = -4.871368 kcal Electronic energy + Delta-G solvation = -21110.010105 eV Core-core repulsion = 18082.636577 eV Total energy + Delta-G solvation = -3027.373528 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.55207 -37.72237 -36.07543 -32.81776 -32.38147 -31.90630 -30.91137 -29.73857 -26.49568 -26.18312 -23.78724 -22.99447 -21.17812 -20.53164 -20.11685 -18.22957 -17.18212 -16.25267 -15.26429 -15.16751 -14.77037 -14.65943 -14.27617 -13.89691 -13.47029 -13.30160 -12.94478 -12.55719 -12.41750 -12.31143 -11.99942 -11.83329 -11.65335 -11.50806 -11.31514 -11.06038 -11.02716 -10.82819 -10.67019 -10.49975 -10.44129 -10.18612 -9.75757 -9.31865 -8.82077 -8.27691 -8.10709 -7.48575 -7.44096 -6.15130 -4.60991 1.86112 1.98072 3.14605 3.21647 3.24732 4.06114 4.16286 4.27499 4.61264 4.78247 4.89280 5.18990 5.28810 5.34224 5.39973 5.43719 5.57063 5.59561 5.69610 5.76727 5.91454 5.92084 5.97370 6.01892 6.11361 6.13019 6.22270 6.27527 6.30677 6.31237 6.43329 6.62155 6.64066 6.70235 6.95293 7.12875 7.28077 7.45280 7.57223 7.93293 8.14988 8.35751 9.05270 9.58122 10.63714 10.84077 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.012512 B = 0.007122 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.308052 B = 3930.465910 C = 5485.925388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.149 4.149 4 H 0.103 0.897 5 C -0.170 4.170 6 C 0.168 3.832 7 N -0.730 5.730 8 C 0.559 3.441 9 O -0.564 6.564 10 C -0.546 4.546 11 H 0.065 0.935 12 C 0.089 3.911 13 N -0.767 5.767 14 Si 0.905 3.095 15 H -0.273 1.273 16 H -0.280 1.280 17 H -0.266 1.266 18 C -0.037 4.037 19 C -0.113 4.113 20 C -0.131 4.131 21 C -0.128 4.128 22 C -0.098 4.098 23 C -0.108 4.108 24 C -0.064 4.064 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.381 0.619 33 H 0.267 0.733 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.733 4.499 4.369 12.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 C -0.168 4.168 4 H 0.121 0.879 5 C -0.208 4.208 6 C 0.079 3.921 7 N -0.385 5.385 8 C 0.362 3.638 9 O -0.445 6.445 10 C -0.583 4.583 11 H 0.083 0.917 12 C -0.130 4.130 13 N -0.396 5.396 14 Si 0.730 3.270 15 H -0.198 1.198 16 H -0.205 1.205 17 H -0.190 1.190 18 C -0.038 4.038 19 C -0.131 4.131 20 C -0.149 4.149 21 C -0.146 4.146 22 C -0.098 4.098 23 C -0.165 4.165 24 C -0.082 4.082 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.214 0.786 33 H 0.078 0.922 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.205 5.333 3.914 12.161 hybrid contribution 0.509 -1.276 0.268 1.400 sum -9.696 4.056 4.182 11.312 Atomic orbital electron populations 1.21730 0.95877 1.01162 1.01543 1.21037 0.95205 0.94403 1.02331 1.22768 0.92858 0.97960 1.03227 0.87928 1.23413 1.03336 1.01739 0.92353 1.18718 0.88073 0.87749 0.97531 1.45705 1.15484 1.11660 1.65634 1.18196 0.78461 0.89788 0.77332 1.90583 1.70561 1.33656 1.49712 1.20852 0.98856 0.95393 1.43177 0.91682 1.25654 0.97676 0.96536 0.93153 1.70022 1.14782 1.26248 1.28504 0.86423 0.79061 0.82383 0.79183 1.19809 1.20513 1.18993 1.19200 0.97767 0.93625 0.93228 1.20854 1.00898 0.97636 0.93753 1.20919 1.00053 0.94858 0.99089 1.20872 1.00384 0.99212 0.94139 1.19872 0.99235 0.96601 0.94070 1.20719 0.99968 0.95827 0.99982 1.20942 0.94758 0.91738 1.00786 0.92993 0.92992 0.92817 0.91414 0.91789 0.89245 0.88636 0.78613 0.92247 0.86861 0.86824 0.86967 0.91279 0.91807 0.92323 0.85591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.87 37.16 0.37 -1.22 16 2 C -0.09 -1.24 5.41 -26.73 -0.14 -1.39 16 3 C -0.15 -2.29 5.40 -90.58 -0.49 -2.78 16 4 H 0.10 1.44 8.07 -51.93 -0.42 1.02 16 5 C -0.17 -3.03 9.46 -26.69 -0.25 -3.28 16 6 C 0.17 3.27 1.81 -132.97 -0.24 3.03 16 7 N -0.73 -16.31 5.14 -50.07 -0.26 -16.57 16 8 C 0.56 15.59 7.64 -12.98 -0.10 15.49 16 9 O -0.56 -17.46 13.16 5.20 0.07 -17.39 16 10 C -0.55 -15.37 9.54 -35.63 -0.34 -15.71 16 11 H 0.06 1.69 7.85 -52.49 -0.41 1.28 16 12 C 0.09 2.49 5.50 -17.37 -0.10 2.40 16 13 N -0.77 -22.87 11.83 55.55 0.66 -22.22 16 14 Si 0.90 20.30 29.56 -169.99 -5.02 15.27 16 15 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 18 C -0.04 -0.73 4.81 -104.62 -0.50 -1.23 16 19 C -0.11 -1.98 9.69 -39.58 -0.38 -2.37 16 20 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 21 C -0.13 -2.06 9.70 -39.58 -0.38 -2.45 16 22 C -0.10 -1.74 5.88 -104.62 -0.62 -2.36 16 23 C -0.11 -1.61 10.01 36.01 0.36 -1.25 16 24 C -0.06 -1.30 7.83 -39.58 -0.31 -1.61 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 29 H 0.06 0.85 7.62 -51.93 -0.40 0.45 16 30 H 0.09 1.50 8.04 -51.93 -0.42 1.08 16 31 H 0.10 1.81 8.03 -51.93 -0.42 1.39 16 32 H 0.38 7.64 7.70 -40.82 -0.31 7.33 16 33 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 34 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 36 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.90 8.09 -51.93 -0.42 0.48 16 39 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 40 H 0.13 2.79 7.61 -52.48 -0.40 2.39 16 LS Contribution 337.59 15.07 5.09 5.09 Total: -1.00 -32.94 337.59 -9.11 -42.05 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -6.12 Total: 10.96 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -3.53 Total: -17.20 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.40 Total: -38.79 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: 0.07 Total: -17.39 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.94 -9.11 -42.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337603922.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.182 kcal (2) G-P(sol) polarization free energy of solvation -32.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds