Wall clock time and date at job start Mon Mar 30 2020 02:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47052 * 2 1 4 4 H 1.08999 * 115.55946 * 30.05590 * 3 2 1 5 5 C 1.52994 * 117.49769 * 244.36641 * 3 2 1 6 6 C 1.52998 * 117.49852 * 175.74251 * 3 2 1 7 7 N 1.46500 * 117.49783 * 214.97633 * 6 3 2 8 8 C 1.34775 * 119.99685 * 185.57988 * 7 6 3 9 9 O 1.21691 * 120.00180 * 4.86058 * 8 7 6 10 10 C 1.46379 * 120.00168 * 184.86235 * 8 7 6 11 11 H 1.08003 * 119.99146 * 359.97438 * 10 8 7 12 12 C 1.40041 * 120.00277 * 179.97438 * 10 8 7 13 13 N 1.30668 * 120.00084 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 119.99943 * 179.97438 * 12 10 8 15 15 H 1.48507 * 109.47136 * 60.00204 * 14 12 10 16 16 H 1.48499 * 109.47107 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47646 * 300.00536 * 14 12 10 18 18 C 1.50700 * 117.49960 * 359.97438 * 6 3 2 19 19 C 1.38257 * 119.99741 * 280.56703 * 18 6 3 20 20 C 1.38219 * 119.99883 * 180.02562 * 19 18 6 21 21 C 1.38255 * 119.99755 * 359.97438 * 20 19 18 22 22 C 1.38206 * 120.00309 * 359.97374 * 21 20 19 23 23 C 1.50699 * 120.00232 * 179.97438 * 22 21 20 24 24 C 1.38216 * 120.00313 * 100.29383 * 18 6 3 25 25 H 1.08998 * 109.46788 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47449 * 299.99939 * 1 2 3 27 27 H 1.08996 * 109.46762 * 60.00235 * 1 2 3 28 28 H 1.08993 * 109.47177 * 239.99810 * 2 1 3 29 29 H 1.09008 * 109.46814 * 119.99352 * 2 1 3 30 30 H 1.08999 * 117.49850 * 145.01998 * 5 3 2 31 31 H 1.09006 * 117.50012 * 0.02562 * 5 3 2 32 32 H 0.96992 * 119.99825 * 5.30637 * 7 6 3 33 33 H 0.96996 * 119.99914 * 180.02562 * 13 12 10 34 34 H 1.07998 * 119.99922 * 359.97438 * 19 18 6 35 35 H 1.08003 * 119.99529 * 179.97438 * 20 19 18 36 36 H 1.08009 * 119.99752 * 179.97438 * 21 20 19 37 37 H 1.09004 * 109.47232 * 89.99756 * 23 22 21 38 38 H 1.09004 * 109.47418 * 210.00374 * 23 22 21 39 39 H 1.09007 * 109.47131 * 330.00184 * 23 22 21 40 40 H 1.07999 * 119.99667 * 359.97438 * 24 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3943 2.1696 0.4925 5 6 2.8290 1.9129 -1.2235 6 6 3.5515 1.6575 0.1008 7 7 4.0201 2.8248 0.8517 8 6 5.3335 3.1260 0.8784 9 8 6.1192 2.4821 0.2083 10 6 5.8150 4.2276 1.7135 11 1 5.1176 4.7992 2.3078 12 6 7.1798 4.5402 1.7416 13 7 8.0235 3.8488 1.0221 14 14 7.7941 5.9464 2.8068 15 1 7.4591 5.6740 4.2277 16 1 9.2667 6.0710 2.6611 17 1 7.1450 7.2116 2.3790 18 6 4.4239 0.4322 0.1930 19 6 4.5633 -0.2279 1.3998 20 6 5.3639 -1.3514 1.4845 21 6 6.0249 -1.8154 0.3624 22 6 5.8847 -1.1562 -0.8442 23 6 6.6057 -1.6616 -2.0672 24 6 5.0803 -0.0350 -0.9301 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.7024 2.9494 -1.5360 31 1 2.9844 1.1947 -2.0287 32 1 3.3847 3.3832 1.3263 33 1 8.9688 4.0651 1.0419 34 1 4.0472 0.1348 2.2764 35 1 5.4730 -1.8668 2.4274 36 1 6.6508 -2.6931 0.4287 37 1 5.9727 -2.3768 -2.5925 38 1 6.8330 -0.8242 -2.7271 39 1 7.5331 -2.1494 -1.7667 40 1 4.9676 0.4778 -1.8738 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337603925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:44 Heat of formation + Delta-G solvation = -1.745898 kcal Electronic energy + Delta-G solvation = -21292.182362 eV Core-core repulsion = 18264.944364 eV Total energy + Delta-G solvation = -3027.237998 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.61850 -37.52152 -36.20693 -32.86634 -32.24985 -32.04839 -30.74447 -29.72938 -26.47362 -26.16241 -23.66753 -22.98261 -21.17769 -20.94040 -19.72589 -18.41071 -17.11762 -16.01940 -15.40636 -15.26783 -14.60300 -14.52785 -14.28750 -13.82736 -13.60505 -13.28159 -12.75782 -12.64129 -12.52566 -12.16153 -12.00669 -11.87178 -11.78624 -11.38556 -11.23530 -11.12103 -11.00551 -10.81326 -10.60467 -10.48722 -10.43267 -10.21202 -9.83201 -9.51576 -8.81375 -8.23124 -7.98671 -7.40946 -7.32015 -6.13814 -4.60965 2.01068 2.08458 3.16584 3.21558 3.23141 4.06136 4.15552 4.35660 4.62034 4.71524 4.97981 5.20539 5.33417 5.35848 5.37170 5.45419 5.54567 5.69842 5.70661 5.79605 5.90421 5.92771 5.96037 5.98943 6.08047 6.16309 6.21390 6.24368 6.27911 6.31403 6.39673 6.61039 6.69579 6.72367 7.08113 7.17889 7.33536 7.45198 7.66782 7.91995 8.12427 8.34654 9.05129 9.56161 10.63954 10.83666 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.015794 B = 0.006532 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.393566 B = 4285.854358 C = 5353.008798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.152 4.152 4 H 0.102 0.898 5 C -0.190 4.190 6 C 0.173 3.827 7 N -0.733 5.733 8 C 0.555 3.445 9 O -0.557 6.557 10 C -0.546 4.546 11 H 0.065 0.935 12 C 0.090 3.910 13 N -0.766 5.766 14 Si 0.905 3.095 15 H -0.269 1.269 16 H -0.281 1.281 17 H -0.269 1.269 18 C -0.002 4.002 19 C -0.107 4.107 20 C -0.123 4.123 21 C -0.130 4.130 22 C -0.093 4.093 23 C -0.108 4.108 24 C -0.079 4.079 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.382 0.618 33 H 0.268 0.732 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.540 -8.566 -2.028 12.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.171 4.171 4 H 0.120 0.880 5 C -0.229 4.229 6 C 0.084 3.916 7 N -0.386 5.386 8 C 0.359 3.641 9 O -0.437 6.437 10 C -0.583 4.583 11 H 0.083 0.917 12 C -0.130 4.130 13 N -0.394 5.394 14 Si 0.730 3.270 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.194 1.194 18 C -0.003 4.003 19 C -0.126 4.126 20 C -0.141 4.141 21 C -0.148 4.148 22 C -0.093 4.093 23 C -0.164 4.164 24 C -0.098 4.098 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.214 0.786 33 H 0.078 0.922 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.710 -9.061 -2.559 12.826 hybrid contribution 0.090 1.280 0.867 1.549 sum -8.620 -7.781 -1.692 11.735 Atomic orbital electron populations 1.21740 0.95907 1.01107 1.01623 1.21070 0.95155 0.94266 1.02236 1.22779 0.93460 0.97907 1.02954 0.87956 1.23606 1.04921 1.01940 0.92468 1.18860 0.89437 0.87801 0.95504 1.45834 1.09653 1.27433 1.55703 1.18218 0.78842 0.84708 0.82329 1.90636 1.53622 1.53822 1.45636 1.20812 0.92953 1.16568 1.27976 0.91712 1.25649 0.96658 0.96170 0.94537 1.70006 1.02958 1.34509 1.31951 0.86481 0.77863 0.81826 0.80846 1.19358 1.20594 1.19358 1.18686 0.95941 0.92399 0.93285 1.20745 0.99446 0.95473 0.96916 1.20896 0.98070 0.97291 0.97812 1.20791 1.00952 1.00286 0.92783 1.19713 0.98164 0.96158 0.95230 1.20711 0.99225 1.00918 0.95594 1.20633 0.95941 0.94876 0.98331 0.93056 0.92885 0.92833 0.91918 0.91539 0.88936 0.89042 0.78603 0.92156 0.87063 0.86954 0.87124 0.92013 0.91717 0.92056 0.86922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.87 37.16 0.37 -1.19 16 2 C -0.09 -1.18 5.28 -26.73 -0.14 -1.32 16 3 C -0.15 -2.30 5.62 -90.62 -0.51 -2.81 16 4 H 0.10 1.44 8.08 -51.93 -0.42 1.02 16 5 C -0.19 -3.21 9.29 -26.73 -0.25 -3.46 16 6 C 0.17 3.38 2.40 -132.97 -0.32 3.06 16 7 N -0.73 -16.48 5.56 -50.08 -0.28 -16.76 16 8 C 0.56 15.60 7.52 -12.99 -0.10 15.51 16 9 O -0.56 -17.43 13.08 5.20 0.07 -17.36 16 10 C -0.55 -15.44 9.54 -35.63 -0.34 -15.78 16 11 H 0.06 1.68 7.85 -52.48 -0.41 1.27 16 12 C 0.09 2.51 5.50 -17.37 -0.10 2.42 16 13 N -0.77 -23.03 11.83 55.55 0.66 -22.37 16 14 Si 0.91 20.35 29.56 -169.99 -5.02 15.33 16 15 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 18 C 0.00 -0.04 2.53 -104.62 -0.26 -0.31 16 19 C -0.11 -2.10 9.07 -39.58 -0.36 -2.46 16 20 C -0.12 -2.18 10.05 -39.58 -0.40 -2.58 16 21 C -0.13 -2.25 9.70 -39.59 -0.38 -2.63 16 22 C -0.09 -1.68 5.88 -104.63 -0.62 -2.29 16 23 C -0.11 -1.56 10.01 36.01 0.36 -1.20 16 24 C -0.08 -1.59 8.25 -39.58 -0.33 -1.91 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.84 7.88 -51.93 -0.41 0.43 16 29 H 0.07 0.91 7.43 -51.92 -0.39 0.53 16 30 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 31 H 0.09 1.45 7.06 -51.93 -0.37 1.09 16 32 H 0.38 7.60 8.76 -40.82 -0.36 7.25 16 33 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 34 H 0.11 2.09 8.06 -52.49 -0.42 1.66 16 35 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 36 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 39 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 40 H 0.11 2.22 7.05 -52.49 -0.37 1.85 16 LS Contribution 335.32 15.07 5.05 5.05 Total: -1.00 -33.55 335.32 -8.97 -42.53 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -6.08 Total: 10.54 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -3.37 Total: -16.96 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.38 Total: -39.13 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.07 Total: -17.36 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.55 -8.97 -42.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337603925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.780 kcal (2) G-P(sol) polarization free energy of solvation -33.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds