Wall clock time and date at job start Mon Mar 30 2020 02:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47052 * 2 1 4 4 H 1.08999 * 115.55946 * 30.05590 * 3 2 1 5 5 C 1.52994 * 117.49769 * 244.36641 * 3 2 1 6 6 C 1.52998 * 117.49852 * 175.74251 * 3 2 1 7 7 N 1.46500 * 117.49783 * 214.97633 * 6 3 2 8 8 C 1.34775 * 119.99685 * 185.57988 * 7 6 3 9 9 O 1.21691 * 120.00180 * 4.86058 * 8 7 6 10 10 C 1.46379 * 120.00168 * 184.86235 * 8 7 6 11 11 H 1.08003 * 119.99146 * 359.97438 * 10 8 7 12 12 C 1.40041 * 120.00277 * 179.97438 * 10 8 7 13 13 N 1.30668 * 120.00084 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 119.99943 * 179.97438 * 12 10 8 15 15 H 1.48507 * 109.47136 * 60.00204 * 14 12 10 16 16 H 1.48499 * 109.47107 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47646 * 300.00536 * 14 12 10 18 18 C 1.50700 * 117.49960 * 359.97438 * 6 3 2 19 19 C 1.38257 * 119.99741 * 280.56703 * 18 6 3 20 20 C 1.38219 * 119.99883 * 180.02562 * 19 18 6 21 21 C 1.38255 * 119.99755 * 359.97438 * 20 19 18 22 22 C 1.38206 * 120.00309 * 359.97374 * 21 20 19 23 23 C 1.50699 * 120.00232 * 179.97438 * 22 21 20 24 24 C 1.38216 * 120.00313 * 100.29383 * 18 6 3 25 25 H 1.08998 * 109.46788 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47449 * 299.99939 * 1 2 3 27 27 H 1.08996 * 109.46762 * 60.00235 * 1 2 3 28 28 H 1.08993 * 109.47177 * 239.99810 * 2 1 3 29 29 H 1.09008 * 109.46814 * 119.99352 * 2 1 3 30 30 H 1.08999 * 117.49850 * 145.01998 * 5 3 2 31 31 H 1.09006 * 117.50012 * 0.02562 * 5 3 2 32 32 H 0.96992 * 119.99825 * 5.30637 * 7 6 3 33 33 H 0.96996 * 119.99914 * 180.02562 * 13 12 10 34 34 H 1.07998 * 119.99922 * 359.97438 * 19 18 6 35 35 H 1.08003 * 119.99529 * 179.97438 * 20 19 18 36 36 H 1.08009 * 119.99752 * 179.97438 * 21 20 19 37 37 H 1.09004 * 109.47232 * 89.99756 * 23 22 21 38 38 H 1.09004 * 109.47418 * 210.00374 * 23 22 21 39 39 H 1.09007 * 109.47131 * 330.00184 * 23 22 21 40 40 H 1.07999 * 119.99667 * 359.97438 * 24 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3943 2.1696 0.4925 5 6 2.8290 1.9129 -1.2235 6 6 3.5515 1.6575 0.1008 7 7 4.0201 2.8248 0.8517 8 6 5.3335 3.1260 0.8784 9 8 6.1192 2.4821 0.2083 10 6 5.8150 4.2276 1.7135 11 1 5.1176 4.7992 2.3078 12 6 7.1798 4.5402 1.7416 13 7 8.0235 3.8488 1.0221 14 14 7.7941 5.9464 2.8068 15 1 7.4591 5.6740 4.2277 16 1 9.2667 6.0710 2.6611 17 1 7.1450 7.2116 2.3790 18 6 4.4239 0.4322 0.1930 19 6 4.5633 -0.2279 1.3998 20 6 5.3639 -1.3514 1.4845 21 6 6.0249 -1.8154 0.3624 22 6 5.8847 -1.1562 -0.8442 23 6 6.6057 -1.6616 -2.0672 24 6 5.0803 -0.0350 -0.9301 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.7024 2.9494 -1.5360 31 1 2.9844 1.1947 -2.0287 32 1 3.3847 3.3832 1.3263 33 1 8.9688 4.0651 1.0419 34 1 4.0472 0.1348 2.2764 35 1 5.4730 -1.8668 2.4274 36 1 6.6508 -2.6931 0.4287 37 1 5.9727 -2.3768 -2.5925 38 1 6.8330 -0.8242 -2.7271 39 1 7.5331 -2.1494 -1.7667 40 1 4.9676 0.4778 -1.8738 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337603925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:43 Heat of formation + Delta-G solvation = -21.999766 kcal Electronic energy + Delta-G solvation = -21293.060636 eV Core-core repulsion = 18264.944364 eV Total energy + Delta-G solvation = -3028.116272 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.08928 -39.09659 -38.01136 -34.70462 -33.93724 -33.43577 -32.33289 -31.10277 -28.32343 -27.70344 -24.75091 -24.47488 -22.75365 -22.43939 -21.21284 -19.98010 -19.08483 -17.51156 -17.31626 -16.91765 -16.05075 -16.01677 -15.55795 -15.33947 -14.94054 -14.61325 -14.40296 -14.37868 -13.89748 -13.67678 -13.46660 -13.13230 -12.97000 -12.94960 -12.76670 -12.64620 -12.56967 -12.28618 -12.07935 -12.01411 -11.90566 -11.78727 -11.30570 -10.88290 -10.86351 -9.96251 -9.43056 -9.30353 -9.10953 -8.22741 -6.80855 0.58490 0.63660 1.38130 1.41463 1.52207 2.23555 2.49026 2.79013 2.83549 3.21013 3.63642 3.70285 3.97134 4.00213 4.10224 4.23023 4.27588 4.32669 4.38255 4.54161 4.55680 4.71332 4.77917 4.82025 4.84726 4.91241 4.95569 5.00573 5.18477 5.22445 5.29123 5.30740 5.33043 5.35980 5.51935 5.64901 5.76993 5.85978 5.92156 6.23619 6.29115 6.37778 6.90543 7.61037 8.56751 8.74949 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.015794 B = 0.006532 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.393566 B = 4285.854358 C = 5353.008798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 C -0.115 4.115 4 H 0.119 0.881 5 C -0.189 4.189 6 C 0.132 3.868 7 N -0.724 5.724 8 C 0.544 3.456 9 O -0.598 6.598 10 C -0.577 4.577 11 H 0.080 0.920 12 C 0.034 3.966 13 N -0.818 5.818 14 Si 0.991 3.009 15 H -0.257 1.257 16 H -0.275 1.275 17 H -0.256 1.256 18 C -0.014 4.014 19 C -0.132 4.132 20 C -0.126 4.126 21 C -0.137 4.137 22 C -0.102 4.102 23 C -0.105 4.105 24 C -0.107 4.107 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.392 0.608 33 H 0.271 0.729 34 H 0.110 0.890 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.514 -8.879 -1.166 13.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 C -0.134 4.134 4 H 0.137 0.863 5 C -0.228 4.228 6 C 0.044 3.956 7 N -0.377 5.377 8 C 0.347 3.653 9 O -0.482 6.482 10 C -0.614 4.614 11 H 0.098 0.902 12 C -0.181 4.181 13 N -0.448 5.448 14 Si 0.810 3.190 15 H -0.181 1.181 16 H -0.200 1.200 17 H -0.180 1.180 18 C -0.015 4.015 19 C -0.150 4.150 20 C -0.144 4.144 21 C -0.155 4.155 22 C -0.102 4.102 23 C -0.161 4.161 24 C -0.126 4.126 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.226 0.774 33 H 0.081 0.919 34 H 0.128 0.872 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.107 0.893 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.754 -9.380 -1.697 13.639 hybrid contribution 0.338 1.311 0.559 1.465 sum -9.417 -8.069 -1.138 12.453 Atomic orbital electron populations 1.21703 0.93452 1.02347 1.02305 1.21079 0.97132 0.92482 1.01779 1.22899 0.90617 0.99566 1.00296 0.86307 1.23611 1.04720 1.02064 0.92450 1.19182 0.92200 0.86840 0.97381 1.45419 1.08284 1.28413 1.55604 1.18467 0.80312 0.84553 0.81994 1.90594 1.55380 1.55128 1.47138 1.21364 0.94119 1.17256 1.28657 0.90153 1.26820 0.96562 0.99073 0.95680 1.70179 1.03488 1.36965 1.34157 0.85179 0.77280 0.77735 0.78757 1.18108 1.19992 1.17995 1.18837 0.96313 0.92702 0.93660 1.20917 1.00726 0.96626 0.96739 1.21288 0.97112 0.96725 0.99285 1.21191 1.00967 1.01148 0.92171 1.20186 0.97457 0.95494 0.97025 1.20756 1.00022 1.01155 0.94206 1.20763 0.97506 0.96228 0.98107 0.91624 0.92126 0.92213 0.92386 0.92082 0.89284 0.88414 0.77350 0.91868 0.87234 0.84301 0.83960 0.89267 0.92746 0.90584 0.88033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.87 71.98 0.71 -1.91 16 2 C -0.09 -2.17 5.28 30.60 0.16 -2.01 16 3 C -0.11 -3.37 5.62 -10.79 -0.06 -3.43 16 4 H 0.12 3.10 8.08 -2.39 -0.02 3.08 16 5 C -0.19 -6.45 9.29 30.59 0.28 -6.16 16 6 C 0.13 5.24 2.40 2.86 0.01 5.25 16 7 N -0.72 -33.27 5.56 -430.56 -2.40 -35.67 16 8 C 0.54 31.49 7.52 86.36 0.65 32.14 16 9 O -0.60 -39.05 13.08 -4.32 -0.06 -39.11 16 10 C -0.58 -33.14 9.54 24.83 0.24 -32.91 16 11 H 0.08 4.18 7.85 -2.91 -0.02 4.16 16 12 C 0.03 1.91 5.50 85.30 0.47 2.38 16 13 N -0.82 -50.61 11.83 21.83 0.26 -50.35 16 14 Si 0.99 41.83 29.56 68.60 2.03 43.86 16 15 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 16 H -0.28 -11.23 7.11 99.48 0.71 -10.53 16 17 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 18 C -0.01 -0.59 2.53 -19.87 -0.05 -0.64 16 19 C -0.13 -5.23 9.07 22.27 0.20 -5.02 16 20 C -0.13 -4.43 10.05 22.27 0.22 -4.20 16 21 C -0.14 -4.59 9.70 22.27 0.22 -4.38 16 22 C -0.10 -3.67 5.88 -19.87 -0.12 -3.79 16 23 C -0.10 -2.95 10.01 71.24 0.71 -2.23 16 24 C -0.11 -4.44 8.25 22.27 0.18 -4.25 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 1.51 7.88 -2.39 -0.02 1.49 16 29 H 0.06 1.62 7.43 -2.38 -0.02 1.60 16 30 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 31 H 0.10 3.16 7.06 -2.38 -0.02 3.14 16 32 H 0.39 15.77 8.76 -92.71 -0.81 14.95 16 33 H 0.27 15.37 8.29 -92.71 -0.77 14.60 16 34 H 0.11 4.21 8.06 -2.91 -0.02 4.19 16 35 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 36 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 37 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 38 H 0.05 1.62 8.09 -2.38 -0.02 1.60 16 39 H 0.08 1.89 8.09 -2.38 -0.02 1.87 16 40 H 0.10 4.24 7.05 -2.91 -0.02 4.22 16 Total: -1.00 -75.19 335.32 3.88 -71.31 By element: Atomic # 1 Polarization: 40.92 SS G_CDS: 0.22 Total: 41.14 kcal Atomic # 6 Polarization: -35.01 SS G_CDS: 3.83 Total: -31.18 kcal Atomic # 7 Polarization: -83.88 SS G_CDS: -2.14 Total: -86.01 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -0.06 Total: -39.11 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -75.19 3.88 -71.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337603925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.307 kcal (2) G-P(sol) polarization free energy of solvation -75.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds