Wall clock time and date at job start Mon Mar 30 2020 02:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52996 * 109.46932 * 2 1 4 4 H 1.08999 * 115.55553 * 330.58317 * 3 2 1 5 5 C 1.53002 * 117.49886 * 116.25738 * 3 2 1 6 6 C 1.52993 * 60.00158 * 107.50958 * 5 3 2 7 7 N 1.46501 * 117.50300 * 252.51062 * 6 5 3 8 8 C 1.34780 * 120.00116 * 133.55909 * 7 6 5 9 9 O 1.21683 * 120.00149 * 3.80963 * 8 7 6 10 10 C 1.46374 * 119.99869 * 183.80758 * 8 7 6 11 11 H 1.07999 * 120.00014 * 0.02562 * 10 8 7 12 12 C 1.40043 * 119.99755 * 180.02562 * 10 8 7 13 13 N 1.30668 * 120.00282 * 0.02562 * 12 10 8 14 14 Si 1.86805 * 119.99928 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47097 * 89.99935 * 14 12 10 16 16 H 1.48499 * 109.47319 * 209.99835 * 14 12 10 17 17 H 1.48496 * 109.47100 * 330.00262 * 14 12 10 18 18 C 1.50704 * 117.49959 * 107.48991 * 6 5 3 19 19 C 1.38262 * 119.99803 * 328.50296 * 18 6 5 20 20 C 1.38209 * 119.99644 * 179.76552 * 19 18 6 21 21 C 1.38252 * 120.00307 * 0.47893 * 20 19 18 22 22 C 1.38218 * 119.99862 * 359.79691 * 21 20 19 23 23 C 1.50694 * 119.99753 * 179.97438 * 22 21 20 24 24 C 1.38207 * 120.00215 * 148.77020 * 18 6 5 25 25 H 1.08999 * 109.47048 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46623 * 299.99604 * 1 2 3 27 27 H 1.08999 * 109.46759 * 59.99975 * 1 2 3 28 28 H 1.09001 * 109.46623 * 240.00396 * 2 1 3 29 29 H 1.08995 * 109.46705 * 120.00533 * 2 1 3 30 30 H 1.09000 * 117.50008 * 215.00552 * 5 3 2 31 31 H 1.09003 * 117.49681 * 359.97438 * 5 3 2 32 32 H 0.96997 * 119.99779 * 313.56502 * 7 6 5 33 33 H 0.97006 * 120.00226 * 180.02562 * 13 12 10 34 34 H 1.08000 * 119.99865 * 359.97438 * 19 18 6 35 35 H 1.08001 * 119.99763 * 180.24992 * 20 19 18 36 36 H 1.07998 * 119.99914 * 179.76576 * 21 20 19 37 37 H 1.08997 * 109.47511 * 269.97513 * 23 22 21 38 38 H 1.08999 * 109.47619 * 29.97603 * 23 22 21 39 39 H 1.09007 * 109.47032 * 149.98010 * 23 22 21 40 40 H 1.08001 * 119.99808 * 0.02562 * 24 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3892 2.1713 -0.4830 5 6 2.8416 1.9084 1.2171 6 6 3.5504 1.6583 -0.1155 7 7 4.3979 0.4678 -0.2179 8 6 4.3016 -0.3375 -1.2944 9 8 3.5613 -0.0393 -2.2130 10 6 5.0874 -1.5707 -1.3586 11 1 5.7441 -1.8356 -0.5431 12 6 4.9877 -2.4071 -2.4774 13 7 4.1935 -2.0864 -3.4642 14 14 5.9911 -3.9807 -2.5596 15 1 5.2116 -5.0964 -1.9657 16 1 6.3039 -4.2948 -3.9768 17 1 7.2554 -3.8017 -1.8015 18 6 4.0242 2.8622 -0.8884 19 6 3.3255 4.0527 -0.8101 20 6 3.7628 5.1581 -1.5151 21 6 4.8931 5.0707 -2.3063 22 6 5.5883 3.8790 -2.3890 23 6 6.8201 3.7835 -3.2519 24 6 5.1539 2.7747 -1.6797 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.7179 2.9437 1.5349 31 1 3.0052 1.1874 2.0180 32 1 5.0284 0.2590 0.4890 33 1 4.1241 -2.6660 -4.2390 34 1 2.4400 4.1198 -0.1955 35 1 3.2193 6.0892 -1.4508 36 1 5.2326 5.9335 -2.8602 37 1 6.5358 3.4764 -4.2583 38 1 7.3107 4.7560 -3.2938 39 1 7.5048 3.0491 -2.8277 40 1 5.6969 1.8434 -1.7445 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337603928.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:46 Heat of formation + Delta-G solvation = -21.265034 kcal Electronic energy + Delta-G solvation = -21356.880600 eV Core-core repulsion = 18328.796189 eV Total energy + Delta-G solvation = -3028.084411 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.14351 -39.29800 -37.77314 -34.62739 -34.05318 -33.56306 -32.19205 -31.24988 -28.33263 -27.63638 -24.97441 -24.15895 -23.01895 -22.01935 -21.47297 -19.81316 -19.11034 -17.82292 -17.33345 -16.73276 -16.13393 -15.86510 -15.60873 -15.38587 -15.00371 -14.65159 -14.51240 -14.25054 -13.83836 -13.74028 -13.35812 -13.12415 -13.00222 -12.94616 -12.85471 -12.65882 -12.56549 -12.35393 -12.05057 -11.97262 -11.81590 -11.76436 -11.17374 -11.05357 -10.90442 -9.70555 -9.54797 -9.39635 -9.17134 -8.24451 -6.80762 0.47998 0.57052 1.37262 1.38379 1.52379 2.22943 2.54428 2.68498 3.00954 3.19532 3.57999 3.67119 3.99311 4.06252 4.12509 4.20889 4.29540 4.32965 4.37708 4.52383 4.56996 4.65457 4.74323 4.76441 4.81456 4.89590 4.94584 5.01586 5.17641 5.21467 5.24141 5.31851 5.33422 5.39293 5.60708 5.62031 5.71980 5.84123 5.91654 6.21270 6.26381 6.45078 6.91460 7.64274 8.57834 8.78159 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.014345 B = 0.007236 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.376267 B = 3868.569280 C = 5277.969829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.094 4.094 3 C -0.128 4.128 4 H 0.104 0.896 5 C -0.137 4.137 6 C 0.122 3.878 7 N -0.724 5.724 8 C 0.560 3.440 9 O -0.604 6.604 10 C -0.579 4.579 11 H 0.077 0.923 12 C 0.036 3.964 13 N -0.817 5.817 14 Si 0.986 3.014 15 H -0.263 1.263 16 H -0.274 1.274 17 H -0.253 1.253 18 C -0.051 4.051 19 C -0.135 4.135 20 C -0.114 4.114 21 C -0.135 4.135 22 C -0.104 4.104 23 C -0.109 4.109 24 C -0.124 4.124 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.126 0.874 31 H 0.107 0.893 32 H 0.390 0.610 33 H 0.271 0.729 34 H 0.140 0.860 35 H 0.156 0.844 36 H 0.148 0.852 37 H 0.062 0.938 38 H 0.093 0.907 39 H 0.055 0.945 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.337 11.183 7.388 13.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.132 4.132 3 C -0.147 4.147 4 H 0.122 0.878 5 C -0.174 4.174 6 C 0.034 3.966 7 N -0.377 5.377 8 C 0.363 3.637 9 O -0.489 6.489 10 C -0.616 4.616 11 H 0.096 0.904 12 C -0.180 4.180 13 N -0.447 5.447 14 Si 0.807 3.193 15 H -0.187 1.187 16 H -0.199 1.199 17 H -0.176 1.176 18 C -0.053 4.053 19 C -0.154 4.154 20 C -0.132 4.132 21 C -0.152 4.152 22 C -0.104 4.104 23 C -0.166 4.166 24 C -0.143 4.143 25 H 0.070 0.930 26 H 0.094 0.906 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.144 0.856 31 H 0.125 0.875 32 H 0.223 0.777 33 H 0.081 0.919 34 H 0.158 0.842 35 H 0.173 0.827 36 H 0.165 0.835 37 H 0.081 0.919 38 H 0.112 0.888 39 H 0.074 0.926 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.948 11.338 6.552 13.130 hybrid contribution 0.816 -1.359 -0.170 1.594 sum -0.133 9.979 6.382 11.846 Atomic orbital electron populations 1.21645 0.94043 1.01490 1.01954 1.21035 0.96743 0.94462 1.00931 1.22627 0.92403 0.97895 1.01793 0.87776 1.23619 1.00180 1.03771 0.89874 1.19150 0.90967 0.86161 1.00367 1.45234 1.43203 1.25020 1.24256 1.18203 0.81864 0.83340 0.80287 1.90573 1.43644 1.75763 1.38909 1.21394 1.27952 1.06461 1.05832 0.90440 1.26765 0.95135 1.02181 0.93869 1.70181 1.31851 1.36484 1.06156 0.85185 0.79020 0.76903 0.78233 1.18750 1.19919 1.17625 1.19568 0.94860 0.93964 0.96903 1.21121 1.00428 0.92034 1.01777 1.21412 0.96550 0.98989 0.96237 1.21281 0.96349 0.97208 1.00388 1.20213 0.98441 0.93789 0.97913 1.20775 0.94198 1.03422 0.98172 1.20847 0.97825 0.97540 0.98054 0.93029 0.90566 0.93578 0.94273 0.92810 0.85557 0.87510 0.77678 0.91914 0.84205 0.82683 0.83454 0.91898 0.88812 0.92635 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.25 9.87 71.99 0.71 -3.54 16 2 C -0.09 -3.76 5.36 30.60 0.16 -3.59 16 3 C -0.13 -4.65 4.81 -10.79 -0.05 -4.70 16 4 H 0.10 3.61 7.41 -2.39 -0.02 3.59 16 5 C -0.14 -3.97 9.40 30.59 0.29 -3.68 16 6 C 0.12 4.80 2.15 2.86 0.01 4.81 16 7 N -0.72 -32.93 4.24 -430.57 -1.83 -34.76 16 8 C 0.56 31.68 5.41 86.36 0.47 32.15 16 9 O -0.60 -39.07 13.21 -4.29 -0.06 -39.13 16 10 C -0.58 -33.03 9.54 24.83 0.24 -32.80 16 11 H 0.08 4.05 7.85 -2.91 -0.02 4.02 16 12 C 0.04 2.01 5.50 85.30 0.47 2.48 16 13 N -0.82 -50.15 11.83 21.83 0.26 -49.89 16 14 Si 0.99 41.83 29.56 68.60 2.03 43.86 16 15 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 16 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 17 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 18 C -0.05 -2.00 5.67 -19.86 -0.11 -2.11 16 19 C -0.14 -4.16 8.73 22.27 0.19 -3.97 16 20 C -0.11 -3.02 10.05 22.27 0.22 -2.80 16 21 C -0.13 -3.78 9.70 22.27 0.22 -3.56 16 22 C -0.10 -3.59 5.88 -19.87 -0.12 -3.71 16 23 C -0.11 -3.20 10.01 71.23 0.71 -2.48 16 24 C -0.12 -5.25 8.99 22.27 0.20 -5.05 16 25 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.04 2.05 5.47 -2.39 -0.01 2.04 16 29 H 0.05 2.06 7.88 -2.39 -0.02 2.04 16 30 H 0.13 2.85 7.15 -2.39 -0.02 2.84 16 31 H 0.11 2.88 8.03 -2.39 -0.02 2.86 16 32 H 0.39 15.93 8.81 -92.71 -0.82 15.11 16 33 H 0.27 15.23 8.29 -92.70 -0.77 14.46 16 34 H 0.14 3.50 6.50 -2.91 -0.02 3.48 16 35 H 0.16 2.85 8.06 -2.91 -0.02 2.82 16 36 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 37 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.09 2.06 8.09 -2.39 -0.02 2.04 16 39 H 0.05 1.69 8.09 -2.38 -0.02 1.67 16 40 H 0.09 4.24 6.64 -2.91 -0.02 4.22 16 Total: -1.00 -75.54 330.12 4.24 -71.31 By element: Atomic # 1 Polarization: 40.95 SS G_CDS: 0.22 Total: 41.17 kcal Atomic # 6 Polarization: -36.17 SS G_CDS: 3.61 Total: -32.57 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -1.57 Total: -84.64 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -0.06 Total: -39.13 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -75.54 4.24 -71.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337603928.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.042 kcal (2) G-P(sol) polarization free energy of solvation -75.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds