Wall clock time and date at job start Mon Mar 30 2020 00:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47269 * 2 1 4 4 C 1.38257 * 119.99835 * 265.18024 * 3 2 1 5 5 C 1.38216 * 119.99913 * 180.22934 * 4 3 2 6 6 C 1.38262 * 119.99729 * 359.82247 * 5 4 3 7 7 C 1.38212 * 119.99962 * 359.97438 * 6 5 4 8 8 C 1.38217 * 120.00217 * 85.00133 * 3 2 1 9 9 C 1.50701 * 119.99557 * 359.97438 * 8 3 2 10 10 H 1.08996 * 115.56683 * 334.04529 * 9 8 3 11 11 C 1.53076 * 117.49132 * 188.33140 * 9 8 3 12 12 C 1.53000 * 59.98552 * 252.51664 * 11 9 8 13 13 H 1.09000 * 117.49814 * 107.50027 * 12 11 9 14 14 C 1.50703 * 117.49955 * 252.49842 * 12 11 9 15 15 O 1.21280 * 119.99644 * 68.74451 * 14 12 11 16 16 N 1.34768 * 120.00049 * 248.74424 * 14 12 11 17 17 C 1.46500 * 119.99926 * 179.97438 * 16 14 12 18 18 C 1.50706 * 109.47299 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99503 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00434 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 359.72891 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72576 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72423 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72459 * 22 20 18 26 26 H 1.08999 * 109.47501 * 300.00397 * 1 2 3 27 27 H 1.09009 * 109.46777 * 60.00076 * 1 2 3 28 28 H 1.09000 * 109.47179 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47501 * 239.99603 * 2 1 3 30 30 H 1.09001 * 109.46485 * 120.00117 * 2 1 3 31 31 H 1.07998 * 120.00413 * 0.03125 * 4 3 2 32 32 H 1.07995 * 120.00376 * 179.79209 * 5 4 3 33 33 H 1.07995 * 119.99733 * 179.97438 * 6 5 4 34 34 H 1.08006 * 119.99799 * 179.97438 * 7 6 5 35 35 H 1.08996 * 117.51354 * 145.03949 * 11 9 8 36 36 H 1.08996 * 117.49564 * 0.02562 * 11 9 8 37 37 H 0.96997 * 120.00288 * 0.02562 * 16 14 12 38 38 H 1.09004 * 109.47078 * 60.00642 * 17 16 14 39 39 H 1.08993 * 109.47364 * 300.00413 * 17 16 14 40 40 H 0.97000 * 120.00236 * 0.27947 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3576 2.0390 -1.1931 5 6 2.8229 3.3405 -1.1927 6 6 2.9595 4.0254 0.0005 7 6 2.6303 3.4087 1.1929 8 6 2.1644 2.1071 1.1924 9 6 1.8055 1.4348 2.4925 10 1 1.0702 0.6334 2.4203 11 6 1.7853 2.3014 3.7542 12 6 2.9107 1.2872 3.5402 13 1 3.8975 1.6760 3.2889 14 6 2.8995 0.0449 4.3932 15 8 2.0363 -0.7921 4.2341 16 7 3.8485 -0.1360 5.3329 17 6 3.8372 -1.3433 6.1625 18 6 4.9953 -1.3018 7.1259 19 1 5.6718 -0.4599 7.1210 20 6 5.1912 -2.3383 8.0136 21 7 4.3643 -3.3610 8.0232 22 14 6.6263 -2.2865 9.2083 23 1 7.8110 -2.9314 8.5871 24 1 6.9466 -0.8740 9.5361 25 1 6.2622 -3.0127 10.4513 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5139 0.8900 31 1 2.2512 1.5039 -2.1252 32 1 3.0802 3.8223 -2.1244 33 1 3.3234 5.0422 0.0009 34 1 2.7374 3.9437 2.1250 35 1 1.0368 2.0701 4.5120 36 1 2.0313 3.3574 3.6433 37 1 4.5386 0.5336 5.4604 38 1 3.9268 -2.2230 5.5251 39 1 2.9019 -1.3924 6.7200 40 1 3.6189 -3.3879 7.4031 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338612810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:54 Heat of formation + Delta-G solvation = -32.293525 kcal Electronic energy + Delta-G solvation = -20129.138758 eV Core-core repulsion = 17100.576115 eV Total energy + Delta-G solvation = -3028.562642 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.40967 -40.26697 -37.48867 -36.37223 -35.11698 -34.47384 -31.54079 -30.25387 -29.16772 -25.93998 -24.99751 -24.70535 -23.95638 -22.00817 -21.39895 -20.92756 -19.41163 -18.34664 -17.39929 -17.02811 -16.40008 -16.28811 -15.91360 -15.64171 -15.18852 -14.98274 -14.76186 -14.44542 -14.42423 -14.17086 -14.06022 -13.62229 -13.16521 -13.14547 -12.77299 -12.70773 -12.57943 -12.32192 -11.90429 -11.88386 -11.80984 -11.51199 -11.39532 -11.07407 -10.86413 -10.79455 -10.02980 -9.67182 -9.40670 -8.82913 -6.58624 0.36897 0.49948 1.47146 1.54492 1.64127 1.81479 2.26475 2.55043 2.66190 3.04506 3.06881 3.53913 3.65595 3.81627 3.88428 3.92311 4.09938 4.12660 4.24522 4.31643 4.44375 4.60446 4.61799 4.66489 4.67901 4.76520 4.89036 4.91396 4.93729 5.04828 5.09425 5.15112 5.24404 5.32316 5.38834 5.50693 5.62357 5.64032 5.78534 6.04113 6.13424 6.27814 6.73318 7.18491 7.35114 8.56472 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.028255 B = 0.003433 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.745058 B = 8154.179726 C = 8603.416514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 C -0.086 4.086 4 C -0.125 4.125 5 C -0.123 4.123 6 C -0.126 4.126 7 C -0.121 4.121 8 C -0.065 4.065 9 C -0.086 4.086 10 H 0.103 0.897 11 C -0.125 4.125 12 C -0.178 4.178 13 H 0.145 0.855 14 C 0.523 3.477 15 O -0.601 6.601 16 N -0.699 5.699 17 C 0.252 3.748 18 C -0.630 4.630 19 H 0.076 0.924 20 C -0.033 4.033 21 N -0.929 5.929 22 Si 1.133 2.867 23 H -0.270 1.270 24 H -0.260 1.260 25 H -0.284 1.284 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.136 0.864 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.141 0.859 35 H 0.094 0.906 36 H 0.143 0.857 37 H 0.410 0.590 38 H -0.018 1.018 39 H -0.016 1.016 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.351 17.867 -17.867 25.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.128 4.128 3 C -0.086 4.086 4 C -0.142 4.142 5 C -0.141 4.141 6 C -0.143 4.143 7 C -0.139 4.139 8 C -0.065 4.065 9 C -0.105 4.105 10 H 0.121 0.879 11 C -0.162 4.162 12 C -0.199 4.199 13 H 0.163 0.837 14 C 0.311 3.689 15 O -0.484 6.484 16 N -0.348 5.348 17 C 0.129 3.871 18 C -0.668 4.668 19 H 0.095 0.905 20 C -0.231 4.231 21 N -0.565 5.565 22 Si 0.952 3.048 23 H -0.196 1.196 24 H -0.184 1.184 25 H -0.210 1.210 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.154 0.846 32 H 0.163 0.837 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.112 0.888 36 H 0.161 0.839 37 H 0.246 0.754 38 H 0.000 1.000 39 H 0.002 0.998 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.219 16.435 -16.750 23.572 hybrid contribution -0.838 0.258 -1.009 1.337 sum -3.057 16.693 -17.759 24.564 Atomic orbital electron populations 1.21703 0.94083 1.02028 1.02048 1.20560 0.96909 0.92904 1.02390 1.19872 0.99420 0.96181 0.93178 1.21252 0.99797 0.95889 0.97312 1.21482 0.98903 0.94431 0.99260 1.21437 0.99869 1.01022 0.92011 1.21284 0.99040 0.93818 0.99766 1.19006 1.00836 0.94677 0.92017 1.21030 0.99447 1.01643 0.88335 0.87856 1.23272 0.97468 0.97407 0.98041 1.22294 0.98628 0.96538 1.02461 0.83691 1.20499 0.80584 0.87628 0.80193 1.90617 1.39450 1.47293 1.70991 1.45995 1.29922 1.23382 1.35461 1.18702 0.96108 0.83239 0.89036 1.22449 1.13328 1.09779 1.21216 0.90549 1.27695 1.03854 0.91366 1.00211 1.70879 1.15608 1.32137 1.37894 0.82753 0.71324 0.77276 0.73429 1.19575 1.18373 1.20974 0.93539 0.91310 0.92169 0.89985 0.93174 0.84571 0.83682 0.83550 0.84144 0.88794 0.83905 0.75425 0.99982 0.99791 0.93715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.74 71.98 0.70 -2.32 16 2 C -0.09 -2.13 5.38 29.85 0.16 -1.97 16 3 C -0.09 -1.97 5.13 -19.87 -0.10 -2.07 16 4 C -0.12 -2.29 9.68 22.27 0.22 -2.07 16 5 C -0.12 -1.90 10.05 22.27 0.22 -1.68 16 6 C -0.13 -1.94 10.05 22.27 0.22 -1.71 16 7 C -0.12 -2.23 9.30 22.27 0.21 -2.02 16 8 C -0.07 -1.52 5.61 -19.87 -0.11 -1.63 16 9 C -0.09 -2.33 4.66 -11.51 -0.05 -2.39 16 10 H 0.10 3.34 5.47 -2.39 -0.01 3.33 16 11 C -0.12 -2.91 9.57 30.62 0.29 -2.61 16 12 C -0.18 -5.20 5.82 -11.54 -0.07 -5.27 16 13 H 0.15 3.51 8.14 -2.39 -0.02 3.49 16 14 C 0.52 21.92 7.61 87.66 0.67 22.59 16 15 O -0.60 -30.56 16.26 -3.03 -0.05 -30.61 16 16 N -0.70 -30.89 5.55 -466.79 -2.59 -33.48 16 17 C 0.25 14.12 4.74 85.64 0.41 14.52 16 18 C -0.63 -35.23 9.28 25.60 0.24 -34.99 16 19 H 0.08 3.91 7.60 -2.91 -0.02 3.89 16 20 C -0.03 -1.87 5.46 84.65 0.46 -1.41 16 21 N -0.93 -58.32 13.65 21.45 0.29 -58.03 16 22 Si 1.13 48.38 29.90 68.60 2.05 50.43 16 23 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 24 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 25 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 26 H 0.05 1.09 7.17 -2.39 -0.02 1.07 16 27 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.08 1.65 8.05 -2.39 -0.02 1.63 16 30 H 0.05 1.48 6.95 -2.39 -0.02 1.46 16 31 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 33 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 34 H 0.14 1.99 6.02 -2.91 -0.02 1.98 16 35 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.14 2.24 6.18 -2.39 -0.01 2.22 16 37 H 0.41 15.25 8.32 -92.71 -0.77 14.48 16 38 H -0.02 -1.10 8.01 -2.39 -0.02 -1.11 16 39 H -0.02 -0.97 8.00 -2.39 -0.02 -0.99 16 40 H 0.25 16.54 7.22 -92.71 -0.67 15.87 16 Total: -1.00 -74.10 334.48 3.54 -70.56 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.37 Total: 26.17 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: 3.46 Total: -25.03 kcal Atomic # 7 Polarization: -89.21 SS G_CDS: -2.30 Total: -91.51 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.05 Total: -30.61 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.05 Total: 50.43 kcal Total: -74.10 3.54 -70.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338612810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.262 kcal (2) G-P(sol) polarization free energy of solvation -74.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds