Wall clock time and date at job start Mon Mar 30 2020 01:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47447 * 2 1 4 4 C 1.53004 * 109.46747 * 119.99684 * 2 1 3 5 5 H 1.09000 * 115.56217 * 206.57940 * 4 2 1 6 6 C 1.52999 * 117.49856 * 352.27423 * 4 2 1 7 7 C 1.53000 * 117.49657 * 60.90089 * 4 2 1 8 8 H 1.08996 * 117.52189 * 145.03168 * 7 4 2 9 9 C 1.50701 * 117.50232 * 359.97438 * 7 4 2 10 10 O 1.21281 * 120.00056 * 35.65654 * 9 7 4 11 11 N 1.34771 * 120.00068 * 215.66592 * 9 7 4 12 12 C 1.39123 * 120.00022 * 185.07461 * 11 9 7 13 13 C 1.38641 * 120.28683 * 20.19629 * 12 11 9 14 14 C 1.38225 * 120.03813 * 180.02562 * 13 12 11 15 15 C 1.38869 * 120.61243 * 359.97438 * 14 13 12 16 16 C 1.36464 * 120.57741 * 0.02562 * 15 14 13 17 17 C 1.40728 * 119.94406 * 0.02562 * 16 15 14 18 18 C 1.41070 * 120.29899 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00011 * 207.17675 * 18 17 16 20 20 C 1.39958 * 120.00061 * 27.18414 * 18 17 16 21 21 N 1.30847 * 120.00135 * 14.06443 * 20 18 17 22 22 Si 1.86801 * 119.99632 * 194.07405 * 20 18 17 23 23 H 1.48500 * 109.47339 * 89.99976 * 22 20 18 24 24 H 1.48501 * 109.46915 * 209.99215 * 22 20 18 25 25 H 1.48500 * 109.47440 * 329.99304 * 22 20 18 26 26 H 1.08991 * 109.47274 * 292.85021 * 1 2 3 27 27 H 1.09000 * 109.46786 * 52.84965 * 1 2 3 28 28 H 1.08999 * 109.46945 * 172.83942 * 1 2 3 29 29 H 1.09003 * 109.47384 * 239.99812 * 2 1 3 30 30 H 1.08998 * 109.47436 * 184.66822 * 3 2 1 31 31 H 1.09005 * 109.46910 * 304.67083 * 3 2 1 32 32 H 1.09001 * 109.46791 * 64.66015 * 3 2 1 33 33 H 1.08998 * 117.49907 * 0.02562 * 6 4 2 34 34 H 1.08994 * 117.51774 * 214.96832 * 6 4 2 35 35 H 0.97006 * 120.00549 * 5.06326 * 11 9 7 36 36 H 1.08004 * 119.98186 * 0.04918 * 13 12 11 37 37 H 1.07996 * 119.69367 * 179.97438 * 14 13 12 38 38 H 1.08001 * 119.70624 * 180.02562 * 15 14 13 39 39 H 1.08000 * 120.02371 * 179.72470 * 16 15 14 40 40 H 0.96999 * 119.99951 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.0258 -0.4154 1.5995 6 6 1.0074 -1.1203 2.3055 7 6 1.6531 -2.1912 1.4238 8 1 2.3840 -2.8526 1.8889 9 6 0.7985 -2.8177 0.3522 10 8 0.9502 -2.4989 -0.8080 11 7 -0.1345 -3.7322 0.6833 12 6 -0.8503 -4.3879 -0.3133 13 6 -0.3584 -4.4399 -1.6084 14 6 -1.0741 -5.0923 -2.5947 15 6 -2.2876 -5.7010 -2.3026 16 6 -2.7951 -5.6652 -1.0363 17 6 -2.0869 -5.0066 -0.0141 18 6 -2.6049 -4.9645 1.2974 19 1 -2.3442 -4.1484 1.9551 20 6 -3.4564 -5.9804 1.7464 21 7 -3.5570 -7.0962 1.0705 22 14 -4.4496 -5.7431 3.3107 23 1 -5.7613 -5.1324 2.9764 24 1 -4.6684 -7.0594 3.9625 25 1 -3.7088 -4.8493 4.2367 26 1 -0.3633 0.3990 0.9469 27 1 -0.3633 0.6206 -0.8191 28 1 -0.3633 -1.0196 -0.1281 29 1 1.8934 -0.5139 -0.8900 30 1 3.1269 1.4436 -0.0836 31 1 1.6100 1.9799 -0.8452 32 1 1.7465 1.9316 0.9288 33 1 -0.0351 -0.8694 2.1102 34 1 1.3137 -1.0772 3.3507 35 1 -0.3069 -3.9334 1.6165 36 1 0.5847 -3.9707 -1.8468 37 1 -0.6859 -5.1290 -3.6019 38 1 -2.8344 -6.2071 -3.0844 39 1 -3.7419 -6.1378 -0.8201 40 1 -4.1475 -7.8001 1.3815 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344337460.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:31 Heat of formation + Delta-G solvation = -8.845723 kcal Electronic energy + Delta-G solvation = -21187.662158 eV Core-core repulsion = 18160.116288 eV Total energy + Delta-G solvation = -3027.545869 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.65219 -39.60216 -37.98861 -35.50456 -35.42635 -33.95254 -31.49352 -30.29569 -28.09015 -27.21720 -25.42792 -24.38581 -23.25314 -22.23407 -20.76428 -20.04533 -19.18809 -18.23635 -17.73888 -16.92419 -16.75050 -16.24477 -15.83988 -15.50895 -15.09335 -14.60539 -14.55428 -14.28954 -13.84472 -13.69065 -13.49205 -13.22956 -13.17449 -12.86579 -12.74789 -12.52324 -12.20658 -12.12957 -11.95075 -11.83314 -11.64892 -11.50496 -11.20556 -11.07497 -10.99454 -10.81345 -10.13213 -9.31599 -8.78304 -8.47298 -6.28868 0.84828 1.06651 1.41790 1.53652 1.54454 1.89978 2.21847 2.39936 2.78621 2.83729 3.65375 3.74796 3.87568 3.96266 4.12086 4.27081 4.35877 4.47450 4.54403 4.67114 4.78453 4.80192 4.81086 4.86529 4.97993 5.06116 5.11165 5.12131 5.23140 5.25618 5.30415 5.35223 5.44652 5.51192 5.61687 5.80833 5.84975 6.16014 6.20239 6.26673 6.67310 6.77701 6.97877 7.04535 7.47198 8.37087 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.018469 B = 0.005838 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.724146 B = 4795.082099 C = 5833.011587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.069 4.069 3 C -0.136 4.136 4 C -0.106 4.106 5 H 0.138 0.862 6 C -0.152 4.152 7 C -0.198 4.198 8 H 0.148 0.852 9 C 0.526 3.474 10 O -0.557 6.557 11 N -0.635 5.635 12 C 0.018 3.982 13 C -0.122 4.122 14 C -0.228 4.228 15 C -0.125 4.125 16 C -0.172 4.172 17 C 0.069 3.931 18 C -0.490 4.490 19 H 0.083 0.917 20 C 0.037 3.963 21 N -0.827 5.827 22 Si 0.981 3.019 23 H -0.269 1.269 24 H -0.272 1.272 25 H -0.251 1.251 26 H 0.065 0.935 27 H 0.045 0.955 28 H 0.034 0.966 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.132 0.868 35 H 0.411 0.589 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.309 10.338 6.120 14.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.087 4.087 3 C -0.193 4.193 4 C -0.124 4.124 5 H 0.156 0.844 6 C -0.189 4.189 7 C -0.219 4.219 8 H 0.166 0.834 9 C 0.316 3.684 10 O -0.438 6.438 11 N -0.276 5.276 12 C -0.077 4.077 13 C -0.142 4.142 14 C -0.248 4.248 15 C -0.143 4.143 16 C -0.192 4.192 17 C 0.065 3.935 18 C -0.519 4.519 19 H 0.101 0.899 20 C -0.178 4.178 21 N -0.453 5.453 22 Si 0.803 3.197 23 H -0.194 1.194 24 H -0.197 1.197 25 H -0.175 1.175 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.150 0.850 35 H 0.247 0.753 36 H 0.143 0.857 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.351 10.339 5.353 13.769 hybrid contribution -0.861 -0.732 0.528 1.248 sum 6.490 9.607 5.882 13.000 Atomic orbital electron populations 1.22093 0.96683 1.00921 1.01288 1.20624 0.94650 0.96556 0.96871 1.21765 1.01243 0.94245 1.02058 1.22548 1.00722 0.91902 0.97237 0.84446 1.23392 0.99072 0.98797 0.97635 1.22271 1.03972 0.94462 1.01214 0.83418 1.20325 0.80171 0.78122 0.89772 1.90533 1.69646 1.62001 1.21586 1.43042 1.36516 1.38436 1.09631 1.18005 0.93605 1.06426 0.89668 1.21200 1.00355 1.00204 0.92435 1.20648 0.98375 1.07055 0.98676 1.20700 0.96780 1.00361 0.96500 1.20911 1.00796 1.05321 0.92164 1.17709 0.88860 0.92407 0.94523 1.19533 1.26640 1.07911 0.97841 0.89917 1.26701 0.95932 0.93266 1.01863 1.69884 1.31223 1.04604 1.39632 0.85202 0.78597 0.78739 0.77203 1.19368 1.19685 1.17462 0.91569 0.93578 0.94745 0.91946 0.91645 0.93062 0.91613 0.88899 0.85029 0.75252 0.85709 0.87073 0.87319 0.87553 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.58 7.56 71.98 0.54 -4.04 16 2 C -0.07 -1.79 2.45 -10.79 -0.03 -1.82 16 3 C -0.14 -2.65 9.17 71.98 0.66 -1.99 16 4 C -0.11 -2.33 5.71 -10.79 -0.06 -2.40 16 5 H 0.14 2.25 8.11 -2.39 -0.02 2.23 16 6 C -0.15 -3.20 9.32 30.60 0.29 -2.91 16 7 C -0.20 -5.18 6.16 -11.54 -0.07 -5.25 16 8 H 0.15 3.18 8.14 -2.39 -0.02 3.17 16 9 C 0.53 19.60 5.31 87.66 0.47 20.06 16 10 O -0.56 -24.00 10.12 -3.03 -0.03 -24.03 16 11 N -0.63 -26.22 5.17 -302.29 -1.56 -27.78 16 12 C 0.02 0.90 6.53 38.88 0.25 1.15 16 13 C -0.12 -6.06 8.77 22.36 0.20 -5.86 16 14 C -0.23 -10.92 10.04 22.42 0.23 -10.70 16 15 C -0.12 -6.10 9.97 22.01 0.22 -5.88 16 16 C -0.17 -9.18 8.61 22.46 0.19 -8.99 16 17 C 0.07 3.66 5.57 -21.18 -0.12 3.54 16 18 C -0.49 -24.69 8.36 23.38 0.20 -24.49 16 19 H 0.08 3.88 7.09 -2.91 -0.02 3.86 16 20 C 0.04 1.79 5.20 85.26 0.44 2.23 16 21 N -0.83 -42.08 10.92 21.83 0.24 -41.84 16 22 Si 0.98 36.30 29.58 68.60 2.03 38.33 16 23 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 24 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 25 H -0.25 -8.74 7.11 99.48 0.71 -8.03 16 26 H 0.07 1.71 6.50 -2.39 -0.02 1.69 16 27 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.03 1.28 4.84 -2.39 -0.01 1.27 16 29 H 0.06 2.03 6.74 -2.39 -0.02 2.01 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.09 2.26 5.77 -2.39 -0.01 2.25 16 34 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.41 15.55 7.39 -92.70 -0.69 14.86 16 36 H 0.13 6.17 5.44 -2.91 -0.02 6.15 16 37 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 38 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 39 H 0.11 5.87 6.23 -2.91 -0.02 5.85 16 40 H 0.29 13.27 8.30 -92.71 -0.77 12.50 16 Total: -1.00 -61.75 317.20 4.45 -57.30 By element: Atomic # 1 Polarization: 45.00 SS G_CDS: 0.37 Total: 45.37 kcal Atomic # 6 Polarization: -50.75 SS G_CDS: 3.40 Total: -47.35 kcal Atomic # 7 Polarization: -68.30 SS G_CDS: -1.32 Total: -69.62 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.03 Total: -24.03 kcal Atomic # 14 Polarization: 36.30 SS G_CDS: 2.03 Total: 38.33 kcal Total: -61.75 4.45 -57.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344337460.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.457 kcal (2) G-P(sol) polarization free energy of solvation -61.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds