Wall clock time and date at job start Mon Mar 30 2020 01:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46972 * 2 1 4 4 C 1.52998 * 115.56132 * 325.68895 * 3 2 1 5 5 C 1.53000 * 117.49937 * 111.37733 * 3 2 1 6 6 C 1.53001 * 117.49711 * 180.02562 * 3 2 1 7 7 H 1.08997 * 117.52121 * 359.97438 * 6 3 2 8 8 C 1.50702 * 117.49661 * 145.02057 * 6 3 2 9 9 O 1.21281 * 119.99793 * 0.02562 * 8 6 3 10 10 N 1.34779 * 120.00055 * 180.02562 * 8 6 3 11 11 C 1.39120 * 120.00000 * 185.65918 * 10 8 6 12 12 C 1.38634 * 120.28449 * 23.88565 * 11 10 8 13 13 C 1.38226 * 120.03390 * 180.25142 * 12 11 10 14 14 C 1.38863 * 120.61552 * 0.04869 * 13 12 11 15 15 C 1.36470 * 120.57594 * 359.95275 * 14 13 12 16 16 C 1.40731 * 119.94482 * 0.02562 * 15 14 13 17 17 C 1.41065 * 120.30082 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99874 * 143.48652 * 17 16 15 19 19 C 1.39951 * 120.00326 * 323.48343 * 17 16 15 20 20 N 1.30858 * 120.00323 * 175.37962 * 19 17 16 21 21 Si 1.86799 * 119.99903 * 355.38098 * 19 17 16 22 22 H 1.48499 * 109.47289 * 89.05403 * 21 19 17 23 23 H 1.48503 * 109.47238 * 209.05243 * 21 19 17 24 24 H 1.48497 * 109.47301 * 329.05098 * 21 19 17 25 25 H 1.08998 * 109.46842 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47246 * 299.99488 * 1 2 3 27 27 H 1.08995 * 109.47282 * 59.99875 * 1 2 3 28 28 H 1.08999 * 109.47429 * 239.99993 * 2 1 3 29 29 H 1.08998 * 109.47270 * 119.99588 * 2 1 3 30 30 H 1.08995 * 109.47196 * 274.31447 * 4 3 2 31 31 H 1.09005 * 109.47191 * 34.31200 * 4 3 2 32 32 H 1.09002 * 109.47050 * 154.31002 * 4 3 2 33 33 H 1.09001 * 117.49662 * 0.02562 * 5 3 2 34 34 H 1.08992 * 117.52265 * 214.97000 * 5 3 2 35 35 H 0.97002 * 119.99690 * 5.66426 * 10 8 6 36 36 H 1.07995 * 119.98819 * 0.25448 * 12 11 10 37 37 H 1.07998 * 119.69665 * 180.02562 * 13 12 11 38 38 H 1.07998 * 119.71530 * 179.97438 * 14 13 12 39 39 H 1.07997 * 120.02719 * 180.02562 * 15 14 13 40 40 H 0.96997 * 120.00140 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.1851 2.4450 -0.7780 5 6 2.7418 1.9438 1.2638 6 6 3.5550 1.6562 -0.0006 7 1 4.1887 0.7694 -0.0006 8 6 4.0907 2.8381 -0.7670 9 8 3.3280 3.5773 -1.3526 10 7 5.4173 3.0736 -0.8017 11 6 5.9033 4.2273 -1.4085 12 6 5.0935 5.3456 -1.5338 13 6 5.5800 6.4874 -2.1422 14 6 6.8781 6.5285 -2.6338 15 6 7.6967 5.4422 -2.5238 16 6 7.2262 4.2674 -1.9083 17 6 8.0661 3.1402 -1.7901 18 1 8.0151 2.5189 -0.9082 19 6 8.9655 2.8271 -2.8156 20 7 9.8072 1.8361 -2.6679 21 14 8.9644 3.8238 -4.3955 22 1 9.8849 4.9803 -4.2518 23 1 9.4172 2.9677 -5.5212 24 1 7.5904 4.3159 -4.6694 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.4775 2.4339 -1.8280 31 1 0.1338 2.1707 -0.6907 32 1 1.3350 3.4444 -0.3695 33 1 2.8406 1.2456 2.0950 34 1 2.5950 2.9875 1.5411 35 1 6.0331 2.4386 -0.4037 36 1 4.0821 5.3247 -1.1558 37 1 4.9446 7.3556 -2.2366 38 1 7.2431 7.4281 -3.1069 39 1 8.7049 5.4840 -2.9088 40 1 10.4308 1.6194 -3.3785 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344357631.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:42 Heat of formation + Delta-G solvation = 3.490967 kcal Electronic energy + Delta-G solvation = -20875.897009 eV Core-core repulsion = 17848.886099 eV Total energy + Delta-G solvation = -3027.010910 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.18766 -38.34844 -36.78517 -33.90121 -33.54590 -32.24517 -30.45034 -28.91491 -27.85270 -25.32073 -24.19464 -23.69103 -21.95203 -20.50404 -19.48035 -18.68199 -17.45952 -16.79506 -16.61162 -15.18385 -15.17200 -14.66165 -14.43835 -14.05310 -13.90614 -13.43932 -13.22261 -12.90026 -12.64279 -12.41602 -12.22029 -12.15238 -12.09366 -11.72270 -11.61908 -11.15103 -11.06667 -10.88975 -10.82653 -10.46976 -10.03859 -9.95939 -9.85573 -9.64617 -9.38652 -9.28568 -8.68573 -7.62042 -7.06066 -6.89044 -4.49885 2.35086 2.63770 3.06370 3.12287 3.25014 3.32394 3.73148 3.96144 3.99166 4.56242 4.72182 4.73803 4.92789 5.04207 5.23907 5.28737 5.41259 5.43253 5.59231 5.74294 5.83850 5.89322 5.99976 6.04195 6.05683 6.13151 6.15621 6.22232 6.31159 6.32441 6.61635 6.69013 6.73385 6.97559 7.19386 7.33617 7.48983 7.68525 7.78897 7.96966 8.24879 8.30583 8.57931 8.74723 8.91926 10.12868 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.022483 B = 0.005089 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.072120 B = 5500.403587 C = 6231.939157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 C -0.090 4.090 4 C -0.107 4.107 5 C -0.148 4.148 6 C -0.184 4.184 7 H 0.120 0.880 8 C 0.529 3.471 9 O -0.533 6.533 10 N -0.635 5.635 11 C 0.046 3.954 12 C -0.093 4.093 13 C -0.216 4.216 14 C -0.096 4.096 15 C -0.217 4.217 16 C 0.080 3.920 17 C -0.458 4.458 18 H 0.088 0.912 19 C 0.085 3.915 20 N -0.824 5.824 21 Si 0.911 3.089 22 H -0.271 1.271 23 H -0.294 1.294 24 H -0.243 1.243 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.408 0.592 36 H 0.124 0.876 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.559 -2.666 5.022 12.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.125 4.125 3 C -0.091 4.091 4 C -0.164 4.164 5 C -0.186 4.186 6 C -0.205 4.205 7 H 0.138 0.862 8 C 0.317 3.683 9 O -0.412 6.412 10 N -0.276 5.276 11 C -0.049 4.049 12 C -0.113 4.113 13 C -0.236 4.236 14 C -0.115 4.115 15 C -0.237 4.237 16 C 0.076 3.924 17 C -0.488 4.488 18 H 0.106 0.894 19 C -0.132 4.132 20 N -0.450 5.450 21 Si 0.738 3.262 22 H -0.197 1.197 23 H -0.222 1.222 24 H -0.166 1.166 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.244 0.756 36 H 0.142 0.858 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.121 0.879 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.898 -2.376 4.583 12.970 hybrid contribution 0.877 -0.052 -0.545 1.034 sum -11.021 -2.429 4.038 11.986 Atomic orbital electron populations 1.21821 0.95444 1.01229 1.02246 1.21093 0.96086 0.93291 1.02053 1.21555 0.91133 0.96785 0.99606 1.21448 0.96966 0.97274 1.00667 1.23186 1.02083 1.02644 0.90655 1.22353 0.95840 0.99575 1.02748 0.86180 1.19580 0.82275 0.85446 0.81009 1.90608 1.56942 1.48855 1.44789 1.42956 1.06756 1.22529 1.55356 1.17728 0.93590 0.86409 1.07143 1.20945 0.99492 0.91406 0.99493 1.20385 0.96285 0.98150 1.08758 1.20390 0.94279 0.97269 0.99530 1.20681 0.99240 0.93802 1.09991 1.17534 0.90441 0.93182 0.91259 1.19126 1.15685 1.08954 1.05001 0.89419 1.25985 0.92338 0.94445 1.00397 1.69609 1.15579 1.25490 1.34277 0.86354 0.81149 0.78742 0.79914 1.19697 1.22190 1.16646 0.92970 0.92616 0.91967 0.91442 0.91782 0.91385 0.92926 0.91786 0.88175 0.88401 0.75631 0.85803 0.88492 0.88767 0.87852 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.92 37.16 0.33 -1.00 16 2 C -0.09 -0.89 6.12 -26.73 -0.16 -1.06 16 3 C -0.09 -1.13 2.47 -154.51 -0.38 -1.51 16 4 C -0.11 -1.46 7.73 37.16 0.29 -1.18 16 5 C -0.15 -1.77 9.53 -26.70 -0.25 -2.03 16 6 C -0.18 -2.62 5.91 -91.74 -0.54 -3.16 16 7 H 0.12 1.54 8.14 -51.93 -0.42 1.11 16 8 C 0.53 9.87 7.40 -10.98 -0.08 9.79 16 9 O -0.53 -11.12 10.22 5.56 0.06 -11.06 16 10 N -0.64 -12.88 5.16 -9.48 -0.05 -12.93 16 11 C 0.05 1.07 6.47 -83.18 -0.54 0.53 16 12 C -0.09 -2.12 8.71 -39.44 -0.34 -2.46 16 13 C -0.22 -4.69 10.04 -39.35 -0.39 -5.08 16 14 C -0.10 -2.11 9.97 -39.99 -0.40 -2.51 16 15 C -0.22 -5.23 6.82 -39.28 -0.27 -5.50 16 16 C 0.08 1.99 5.10 -106.65 -0.54 1.45 16 17 C -0.46 -11.86 9.01 -37.87 -0.34 -12.20 16 18 H 0.09 2.29 7.16 -52.48 -0.38 1.92 16 19 C 0.09 2.20 5.51 -17.33 -0.10 2.11 16 20 N -0.82 -21.69 13.93 55.55 0.77 -20.92 16 21 Si 0.91 21.05 24.41 -169.99 -4.15 16.90 16 22 H -0.27 -6.03 6.69 56.52 0.38 -5.65 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.24 -5.86 6.54 56.52 0.37 -5.49 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.57 6.45 -51.93 -0.33 0.23 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.58 7.90 -51.93 -0.41 0.17 16 30 H 0.07 1.08 7.26 -51.93 -0.38 0.70 16 31 H 0.05 0.60 5.59 -51.93 -0.29 0.31 16 32 H 0.06 0.97 7.01 -51.93 -0.36 0.60 16 33 H 0.10 0.97 8.05 -51.93 -0.42 0.56 16 34 H 0.10 1.23 8.05 -51.93 -0.42 0.82 16 35 H 0.41 7.69 7.38 -40.82 -0.30 7.39 16 36 H 0.12 2.76 5.73 -52.49 -0.30 2.46 16 37 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 38 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 39 H 0.10 2.46 4.52 -52.49 -0.24 2.22 16 40 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 LS Contribution 315.82 15.07 4.76 4.76 Total: -1.00 -28.39 315.82 -7.89 -36.28 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -5.55 Total: 10.77 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -3.73 Total: -23.80 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.72 Total: -33.85 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.06 Total: -11.06 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.15 Total: 16.90 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.39 -7.89 -36.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344357631.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.772 kcal (2) G-P(sol) polarization free energy of solvation -28.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds