Wall clock time and date at job start Mon Mar 30 2020 01:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46972 * 2 1 4 4 C 1.52998 * 115.56132 * 325.68895 * 3 2 1 5 5 C 1.53000 * 117.49937 * 111.37733 * 3 2 1 6 6 C 1.53001 * 117.49711 * 180.02562 * 3 2 1 7 7 H 1.08997 * 117.52121 * 359.97438 * 6 3 2 8 8 C 1.50702 * 117.49661 * 145.02057 * 6 3 2 9 9 O 1.21281 * 119.99793 * 0.02562 * 8 6 3 10 10 N 1.34779 * 120.00055 * 180.02562 * 8 6 3 11 11 C 1.39120 * 120.00000 * 185.65918 * 10 8 6 12 12 C 1.38634 * 120.28449 * 23.88565 * 11 10 8 13 13 C 1.38226 * 120.03390 * 180.25142 * 12 11 10 14 14 C 1.38863 * 120.61552 * 0.04869 * 13 12 11 15 15 C 1.36470 * 120.57594 * 359.95275 * 14 13 12 16 16 C 1.40731 * 119.94482 * 0.02562 * 15 14 13 17 17 C 1.41065 * 120.30082 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99874 * 143.48652 * 17 16 15 19 19 C 1.39951 * 120.00326 * 323.48343 * 17 16 15 20 20 N 1.30858 * 120.00323 * 175.37962 * 19 17 16 21 21 Si 1.86799 * 119.99903 * 355.38098 * 19 17 16 22 22 H 1.48499 * 109.47289 * 89.05403 * 21 19 17 23 23 H 1.48503 * 109.47238 * 209.05243 * 21 19 17 24 24 H 1.48497 * 109.47301 * 329.05098 * 21 19 17 25 25 H 1.08998 * 109.46842 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47246 * 299.99488 * 1 2 3 27 27 H 1.08995 * 109.47282 * 59.99875 * 1 2 3 28 28 H 1.08999 * 109.47429 * 239.99993 * 2 1 3 29 29 H 1.08998 * 109.47270 * 119.99588 * 2 1 3 30 30 H 1.08995 * 109.47196 * 274.31447 * 4 3 2 31 31 H 1.09005 * 109.47191 * 34.31200 * 4 3 2 32 32 H 1.09002 * 109.47050 * 154.31002 * 4 3 2 33 33 H 1.09001 * 117.49662 * 0.02562 * 5 3 2 34 34 H 1.08992 * 117.52265 * 214.97000 * 5 3 2 35 35 H 0.97002 * 119.99690 * 5.66426 * 10 8 6 36 36 H 1.07995 * 119.98819 * 0.25448 * 12 11 10 37 37 H 1.07998 * 119.69665 * 180.02562 * 13 12 11 38 38 H 1.07998 * 119.71530 * 179.97438 * 14 13 12 39 39 H 1.07997 * 120.02719 * 180.02562 * 15 14 13 40 40 H 0.96997 * 120.00140 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.1851 2.4450 -0.7780 5 6 2.7418 1.9438 1.2638 6 6 3.5550 1.6562 -0.0006 7 1 4.1887 0.7694 -0.0006 8 6 4.0907 2.8381 -0.7670 9 8 3.3280 3.5773 -1.3526 10 7 5.4173 3.0736 -0.8017 11 6 5.9033 4.2273 -1.4085 12 6 5.0935 5.3456 -1.5338 13 6 5.5800 6.4874 -2.1422 14 6 6.8781 6.5285 -2.6338 15 6 7.6967 5.4422 -2.5238 16 6 7.2262 4.2674 -1.9083 17 6 8.0661 3.1402 -1.7901 18 1 8.0151 2.5189 -0.9082 19 6 8.9655 2.8271 -2.8156 20 7 9.8072 1.8361 -2.6679 21 14 8.9644 3.8238 -4.3955 22 1 9.8849 4.9803 -4.2518 23 1 9.4172 2.9677 -5.5212 24 1 7.5904 4.3159 -4.6694 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.4775 2.4339 -1.8280 31 1 0.1338 2.1707 -0.6907 32 1 1.3350 3.4444 -0.3695 33 1 2.8406 1.2456 2.0950 34 1 2.5950 2.9875 1.5411 35 1 6.0331 2.4386 -0.4037 36 1 4.0821 5.3247 -1.1558 37 1 4.9446 7.3556 -2.2366 38 1 7.2431 7.4281 -3.1069 39 1 8.7049 5.4840 -2.9088 40 1 10.4308 1.6194 -3.3785 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344357631.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:41 Heat of formation + Delta-G solvation = -11.826247 kcal Electronic energy + Delta-G solvation = -20876.561213 eV Core-core repulsion = 17848.886099 eV Total energy + Delta-G solvation = -3027.675115 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.63460 -39.84459 -38.21788 -35.58410 -35.40902 -33.12057 -32.31519 -30.57394 -28.97708 -27.11143 -25.49497 -24.61565 -23.67430 -22.17482 -20.96198 -19.78238 -19.36321 -18.39707 -18.06666 -16.92426 -16.45751 -15.96820 -15.63633 -15.54196 -15.34871 -15.19864 -14.81748 -14.28302 -14.11956 -13.92135 -13.60535 -13.44267 -13.28944 -13.00703 -12.86276 -12.76156 -12.63519 -12.21784 -12.00976 -11.79858 -11.70853 -11.64594 -11.21022 -11.06006 -11.00274 -10.70821 -10.23235 -9.47419 -8.86013 -8.78545 -6.45432 0.62211 0.79050 1.25333 1.34747 1.46563 1.68808 2.11862 2.31096 2.66654 2.81560 3.43655 3.64650 3.70207 3.86310 4.11139 4.16880 4.29579 4.41833 4.46939 4.55054 4.64443 4.76374 4.80589 4.85791 4.89205 4.94417 5.00216 5.05585 5.14988 5.20442 5.23414 5.33749 5.33988 5.44617 5.56958 5.62324 5.69613 5.93676 5.96704 6.09102 6.36961 6.57313 6.81732 6.84348 7.34303 8.24567 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.022483 B = 0.005089 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.072120 B = 5500.403587 C = 6231.939157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 C -0.087 4.087 4 C -0.103 4.103 5 C -0.128 4.128 6 C -0.202 4.202 7 H 0.136 0.864 8 C 0.526 3.474 9 O -0.558 6.558 10 N -0.641 5.641 11 C 0.043 3.957 12 C -0.110 4.110 13 C -0.203 4.203 14 C -0.102 4.102 15 C -0.228 4.228 16 C 0.055 3.945 17 C -0.477 4.477 18 H 0.070 0.930 19 C 0.050 3.950 20 N -0.859 5.859 21 Si 0.957 3.043 22 H -0.256 1.256 23 H -0.286 1.286 24 H -0.260 1.260 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.132 0.868 34 H 0.089 0.911 35 H 0.412 0.588 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.104 0.896 40 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.044 -2.347 5.447 14.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.123 4.123 3 C -0.088 4.088 4 C -0.160 4.160 5 C -0.166 4.166 6 C -0.223 4.223 7 H 0.154 0.846 8 C 0.316 3.684 9 O -0.438 6.438 10 N -0.283 5.283 11 C -0.052 4.052 12 C -0.130 4.130 13 C -0.223 4.223 14 C -0.121 4.121 15 C -0.248 4.248 16 C 0.051 3.949 17 C -0.508 4.508 18 H 0.088 0.912 19 C -0.162 4.162 20 N -0.487 5.487 21 Si 0.783 3.217 22 H -0.181 1.181 23 H -0.213 1.213 24 H -0.184 1.184 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.150 0.850 34 H 0.108 0.892 35 H 0.248 0.752 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.122 0.878 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.386 -2.065 5.024 14.446 hybrid contribution 1.157 -0.045 -0.616 1.311 sum -12.230 -2.110 4.408 13.170 Atomic orbital electron populations 1.21811 0.94321 1.02260 1.02221 1.21131 0.97017 0.91371 1.02745 1.21708 0.89408 0.98068 0.99566 1.21368 0.98792 0.96827 0.98966 1.23311 0.99537 1.03038 0.90664 1.22364 0.97243 0.98235 1.04428 0.84634 1.20378 0.81327 0.86226 0.80481 1.90587 1.57245 1.50152 1.45773 1.43097 1.07688 1.22024 1.55474 1.18007 0.93381 0.87663 1.06197 1.21151 0.99645 0.91838 1.00354 1.20834 0.96510 0.98542 1.06398 1.20751 0.94112 0.97905 0.99338 1.20878 0.99765 0.94246 1.09914 1.17698 0.91110 0.93455 0.92629 1.19123 1.17003 1.09664 1.04982 0.91207 1.26530 0.92184 0.95163 1.02350 1.69638 1.16816 1.26874 1.35415 0.85647 0.80267 0.78271 0.77558 1.18140 1.21294 1.18412 0.91486 0.91978 0.92625 0.91923 0.89958 0.94106 0.90476 0.93691 0.84994 0.89215 0.75193 0.85613 0.85332 0.85282 0.87817 0.89965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.92 71.98 0.64 -1.57 16 2 C -0.09 -1.51 6.12 30.60 0.19 -1.32 16 3 C -0.09 -2.03 2.47 -52.18 -0.13 -2.16 16 4 C -0.10 -2.75 7.73 71.98 0.56 -2.19 16 5 C -0.13 -2.77 9.53 30.61 0.29 -2.48 16 6 C -0.20 -5.54 5.91 -11.52 -0.07 -5.61 16 7 H 0.14 3.29 8.14 -2.39 -0.02 3.27 16 8 C 0.53 19.75 7.40 87.66 0.65 20.39 16 9 O -0.56 -23.51 10.22 -3.03 -0.03 -23.55 16 10 N -0.64 -26.51 5.16 -302.28 -1.56 -28.07 16 11 C 0.04 2.01 6.47 38.88 0.25 2.26 16 12 C -0.11 -4.91 8.71 22.36 0.19 -4.71 16 13 C -0.20 -8.37 10.04 22.42 0.22 -8.14 16 14 C -0.10 -4.28 9.97 22.01 0.22 -4.06 16 15 C -0.23 -10.80 6.82 22.47 0.15 -10.65 16 16 C 0.05 2.77 5.10 -21.18 -0.11 2.66 16 17 C -0.48 -25.46 9.01 23.38 0.21 -25.25 16 18 H 0.07 3.83 7.16 -2.91 -0.02 3.81 16 19 C 0.05 2.66 5.51 85.25 0.47 3.13 16 20 N -0.86 -46.31 13.93 21.83 0.30 -46.00 16 21 Si 0.96 43.40 24.41 68.60 1.67 45.07 16 22 H -0.26 -10.88 6.69 99.48 0.67 -10.21 16 23 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.26 -12.36 6.54 99.48 0.65 -11.71 16 25 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.05 0.89 6.45 -2.39 -0.02 0.88 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.18 7.90 -2.39 -0.02 1.16 16 30 H 0.04 1.30 7.26 -2.39 -0.02 1.28 16 31 H 0.08 1.64 5.59 -2.38 -0.01 1.63 16 32 H 0.04 1.35 7.01 -2.39 -0.02 1.33 16 33 H 0.13 2.05 8.05 -2.39 -0.02 2.03 16 34 H 0.09 2.12 8.05 -2.39 -0.02 2.10 16 35 H 0.41 16.06 7.38 -92.71 -0.68 15.37 16 36 H 0.13 5.57 5.73 -2.91 -0.02 5.56 16 37 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 38 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 39 H 0.10 4.83 4.52 -2.91 -0.01 4.82 16 40 H 0.29 14.30 8.30 -92.71 -0.77 13.53 16 Total: -1.00 -61.85 315.82 4.41 -57.44 By element: Atomic # 1 Polarization: 34.53 SS G_CDS: 0.27 Total: 34.81 kcal Atomic # 6 Polarization: -43.44 SS G_CDS: 3.75 Total: -39.70 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: -1.26 Total: -74.08 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.03 Total: -23.55 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.67 Total: 45.07 kcal Total: -61.85 4.41 -57.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344357631.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.615 kcal (2) G-P(sol) polarization free energy of solvation -61.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds