Wall clock time and date at job start Mon Mar 30 2020 01:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46751 * 2 1 4 4 C 1.53000 * 115.56423 * 34.31450 * 3 2 1 5 5 C 1.53001 * 117.49892 * 248.62197 * 3 2 1 6 6 C 1.53006 * 117.49516 * 179.97438 * 3 2 1 7 7 H 1.08996 * 117.51883 * 214.96977 * 6 3 2 8 8 C 1.50699 * 117.49958 * 0.02562 * 6 3 2 9 9 O 1.21288 * 119.99971 * 0.02562 * 8 6 3 10 10 N 1.34776 * 120.00124 * 180.02562 * 8 6 3 11 11 C 1.39128 * 120.00161 * 185.56728 * 10 8 6 12 12 C 1.38637 * 120.28280 * 24.83063 * 11 10 8 13 13 C 1.38228 * 120.03275 * 179.97438 * 12 11 10 14 14 C 1.38857 * 120.61537 * 0.02562 * 13 12 11 15 15 C 1.36468 * 120.57949 * 359.97438 * 14 13 12 16 16 C 1.40736 * 119.93942 * 359.74915 * 15 14 13 17 17 C 1.41067 * 120.29854 * 180.27548 * 16 15 14 18 18 H 1.08002 * 120.00120 * 215.14012 * 17 16 15 19 19 C 1.39957 * 120.00216 * 35.13979 * 17 16 15 20 20 N 1.30851 * 120.00263 * 355.19648 * 19 17 16 21 21 Si 1.86803 * 120.00075 * 175.19520 * 19 17 16 22 22 H 1.48504 * 109.46968 * 90.00295 * 21 19 17 23 23 H 1.48499 * 109.47469 * 209.99978 * 21 19 17 24 24 H 1.48496 * 109.47061 * 330.00171 * 21 19 17 25 25 H 1.09004 * 109.47458 * 59.99903 * 1 2 3 26 26 H 1.08999 * 109.47086 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47170 * 300.00113 * 1 2 3 28 28 H 1.08999 * 109.46990 * 240.00266 * 2 1 3 29 29 H 1.08990 * 109.47400 * 119.99899 * 2 1 3 30 30 H 1.08998 * 109.47272 * 205.68513 * 4 3 2 31 31 H 1.09005 * 109.46924 * 325.68564 * 4 3 2 32 32 H 1.08997 * 109.47148 * 85.68780 * 4 3 2 33 33 H 1.09001 * 117.49857 * 145.02689 * 5 3 2 34 34 H 1.08995 * 117.50028 * 0.02562 * 5 3 2 35 35 H 0.97006 * 119.99656 * 5.84399 * 10 8 6 36 36 H 1.08000 * 119.98673 * 0.02562 * 12 11 10 37 37 H 1.08008 * 119.68998 * 179.97438 * 13 12 11 38 38 H 1.07997 * 119.71194 * 179.97438 * 14 13 12 39 39 H 1.07999 * 120.02839 * 179.97438 * 15 14 13 40 40 H 0.96998 * 120.00563 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.1851 2.4450 0.7781 5 6 2.7418 1.9438 -1.2638 6 6 3.5550 1.6562 0.0006 7 1 3.9428 2.5110 0.5547 8 6 4.4307 0.4298 0.0006 9 8 3.9282 -0.6741 -0.0004 10 7 5.7722 0.5596 0.0016 11 6 6.5802 -0.5670 -0.1153 12 6 6.0974 -1.7130 -0.7281 13 6 6.9048 -2.8292 -0.8420 14 6 8.2019 -2.8171 -0.3465 15 6 8.7026 -1.7026 0.2613 16 6 7.9033 -0.5509 0.3849 17 6 8.4152 0.6073 1.0066 18 1 7.7660 1.2328 1.6013 19 6 9.7644 0.9460 0.8527 20 7 10.5722 0.1406 0.2115 21 14 10.4122 2.5478 1.5626 22 1 10.8850 2.3183 2.9515 23 1 11.5403 3.0378 0.7304 24 1 9.3264 3.5608 1.5703 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.3350 3.4444 0.3697 31 1 0.1337 2.1707 0.6908 32 1 1.4776 2.4340 1.8280 33 1 2.5946 2.9876 -1.5408 34 1 2.8399 1.2460 -2.0953 35 1 6.1743 1.4381 0.0879 36 1 5.0902 -1.7335 -1.1175 37 1 6.5229 -3.7192 -1.3201 38 1 8.8199 -3.6975 -0.4430 39 1 9.7126 -1.7032 0.6438 40 1 11.5072 0.3754 0.1045 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344357632.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:45 Heat of formation + Delta-G solvation = 0.376271 kcal Electronic energy + Delta-G solvation = -20844.695636 eV Core-core repulsion = 17817.549662 eV Total energy + Delta-G solvation = -3027.145974 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.09636 -38.13038 -36.55400 -33.72350 -33.59742 -32.07818 -29.57653 -28.74066 -28.02938 -25.35232 -23.91443 -23.65644 -21.42950 -20.56961 -19.34936 -18.63532 -17.32415 -16.60985 -16.17599 -15.19542 -14.87341 -14.64708 -14.18394 -14.06558 -13.83165 -13.25202 -13.13907 -12.93376 -12.57285 -12.29345 -12.09289 -11.80000 -11.78766 -11.62419 -11.24346 -11.19474 -11.06291 -10.96098 -10.76811 -10.47116 -10.04320 -9.95248 -9.75176 -9.59082 -9.32359 -9.17506 -8.61005 -7.28810 -6.88215 -6.59357 -4.42657 2.56479 2.86528 3.04681 3.06147 3.20300 3.32199 3.82825 3.91414 4.02949 4.67366 4.70960 4.86550 5.00872 5.08860 5.39874 5.45442 5.57586 5.63112 5.65815 5.73827 5.77416 5.81676 5.97053 6.07645 6.16421 6.29325 6.34609 6.45990 6.54361 6.60178 6.73368 6.95153 7.09431 7.20387 7.31185 7.69380 7.73440 8.02519 8.11016 8.14245 8.47614 8.59919 8.85626 8.87715 9.07293 10.24462 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019591 B = 0.005259 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.863915 B = 5322.935844 C = 6520.390602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.075 4.075 3 C -0.091 4.091 4 C -0.122 4.122 5 C -0.149 4.149 6 C -0.184 4.184 7 H 0.118 0.882 8 C 0.525 3.475 9 O -0.534 6.534 10 N -0.634 5.634 11 C 0.031 3.969 12 C -0.105 4.105 13 C -0.213 4.213 14 C -0.124 4.124 15 C -0.137 4.137 16 C 0.091 3.909 17 C -0.472 4.472 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.809 5.809 21 Si 0.913 3.087 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.264 1.264 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.405 0.595 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.130 0.870 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.616 5.729 -0.611 12.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.113 4.113 3 C -0.091 4.091 4 C -0.179 4.179 5 C -0.186 4.186 6 C -0.205 4.205 7 H 0.136 0.864 8 C 0.312 3.688 9 O -0.413 6.413 10 N -0.275 5.275 11 C -0.063 4.063 12 C -0.125 4.125 13 C -0.232 4.232 14 C -0.143 4.143 15 C -0.158 4.158 16 C 0.088 3.912 17 C -0.504 4.504 18 H 0.091 0.909 19 C -0.142 4.142 20 N -0.436 5.436 21 Si 0.738 3.262 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.188 1.188 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.240 0.760 36 H 0.134 0.866 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.148 0.852 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.730 4.974 -0.698 12.761 hybrid contribution 0.892 1.258 0.307 1.572 sum -10.839 6.232 -0.391 12.509 Atomic orbital electron populations 1.21942 0.96912 1.01130 1.01153 1.21073 0.93593 0.92480 1.04115 1.21545 0.90729 0.97506 0.99361 1.21505 0.99759 0.97008 0.99617 1.23181 1.02064 1.02133 0.91251 1.22375 0.93889 0.99315 1.04902 0.86370 1.19589 0.82399 0.89442 0.77346 1.90613 1.73721 1.26923 1.50053 1.42949 1.04876 1.10076 1.69551 1.17926 0.93481 0.88058 1.06819 1.20770 0.99348 0.92878 0.99526 1.20388 0.95320 0.97967 1.09556 1.20538 0.95069 0.97831 1.00857 1.21167 1.01038 0.91081 1.02468 1.17413 0.89402 0.93234 0.91199 1.19252 0.94366 1.07893 1.28842 0.90873 1.25826 0.96626 0.98315 0.93388 1.69761 1.05620 1.35295 1.32899 0.86242 0.78955 0.81634 0.79400 1.19543 1.20282 1.18810 0.93163 0.93035 0.92748 0.90902 0.90651 0.92588 0.91083 0.92147 0.88239 0.88406 0.75990 0.86571 0.89217 0.89371 0.85192 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.92 37.16 0.33 -1.35 16 2 C -0.08 -1.05 4.36 -26.73 -0.12 -1.17 16 3 C -0.09 -1.15 2.47 -154.50 -0.38 -1.53 16 4 C -0.12 -1.22 9.49 37.16 0.35 -0.87 16 5 C -0.15 -1.83 9.53 -26.70 -0.25 -2.09 16 6 C -0.18 -2.64 5.91 -91.74 -0.54 -3.19 16 7 H 0.12 1.49 8.14 -51.93 -0.42 1.07 16 8 C 0.52 10.00 7.39 -10.99 -0.08 9.92 16 9 O -0.53 -11.45 10.27 5.55 0.06 -11.39 16 10 N -0.63 -13.16 5.12 -9.48 -0.05 -13.21 16 11 C 0.03 0.76 6.46 -83.17 -0.54 0.22 16 12 C -0.11 -2.55 8.71 -39.44 -0.34 -2.90 16 13 C -0.21 -5.01 10.04 -39.36 -0.39 -5.40 16 14 C -0.12 -2.98 9.97 -39.99 -0.40 -3.38 16 15 C -0.14 -3.58 8.61 -39.28 -0.34 -3.92 16 16 C 0.09 2.38 5.56 -106.65 -0.59 1.79 16 17 C -0.47 -11.93 8.17 -37.87 -0.31 -12.24 16 18 H 0.07 1.76 7.45 -52.49 -0.39 1.36 16 19 C 0.07 1.80 5.42 -17.33 -0.09 1.71 16 20 N -0.81 -20.47 10.62 55.55 0.59 -19.88 16 21 Si 0.91 18.19 29.56 -169.99 -5.03 13.17 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 23 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 24 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.53 6.45 -51.93 -0.33 0.20 16 28 H 0.07 1.15 7.01 -51.93 -0.36 0.79 16 29 H 0.07 1.22 7.26 -51.93 -0.38 0.85 16 30 H 0.06 0.49 7.90 -51.93 -0.41 0.08 16 31 H 0.07 0.64 5.59 -51.93 -0.29 0.35 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.10 0.99 8.05 -51.93 -0.42 0.58 16 34 H 0.10 1.29 8.05 -51.93 -0.42 0.87 16 35 H 0.40 7.70 7.70 -40.82 -0.31 7.39 16 36 H 0.12 2.78 5.79 -52.49 -0.30 2.47 16 37 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 38 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 39 H 0.13 3.48 6.16 -52.49 -0.32 3.16 16 40 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 LS Contribution 322.29 15.07 4.86 4.86 Total: -1.00 -28.14 322.29 -8.89 -37.02 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -5.62 Total: 13.83 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -3.70 Total: -24.39 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.54 Total: -33.10 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.06 Total: -11.39 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.17 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.14 -8.89 -37.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344357632.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.401 kcal (2) G-P(sol) polarization free energy of solvation -28.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds