Wall clock time and date at job start Mon Mar 30 2020 01:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46751 * 2 1 4 4 C 1.53000 * 115.56423 * 34.31450 * 3 2 1 5 5 C 1.53001 * 117.49892 * 248.62197 * 3 2 1 6 6 C 1.53006 * 117.49516 * 179.97438 * 3 2 1 7 7 H 1.08996 * 117.51883 * 214.96977 * 6 3 2 8 8 C 1.50699 * 117.49958 * 0.02562 * 6 3 2 9 9 O 1.21288 * 119.99971 * 0.02562 * 8 6 3 10 10 N 1.34776 * 120.00124 * 180.02562 * 8 6 3 11 11 C 1.39128 * 120.00161 * 185.56728 * 10 8 6 12 12 C 1.38637 * 120.28280 * 24.83063 * 11 10 8 13 13 C 1.38228 * 120.03275 * 179.97438 * 12 11 10 14 14 C 1.38857 * 120.61537 * 0.02562 * 13 12 11 15 15 C 1.36468 * 120.57949 * 359.97438 * 14 13 12 16 16 C 1.40736 * 119.93942 * 359.74915 * 15 14 13 17 17 C 1.41067 * 120.29854 * 180.27548 * 16 15 14 18 18 H 1.08002 * 120.00120 * 215.14012 * 17 16 15 19 19 C 1.39957 * 120.00216 * 35.13979 * 17 16 15 20 20 N 1.30851 * 120.00263 * 355.19648 * 19 17 16 21 21 Si 1.86803 * 120.00075 * 175.19520 * 19 17 16 22 22 H 1.48504 * 109.46968 * 90.00295 * 21 19 17 23 23 H 1.48499 * 109.47469 * 209.99978 * 21 19 17 24 24 H 1.48496 * 109.47061 * 330.00171 * 21 19 17 25 25 H 1.09004 * 109.47458 * 59.99903 * 1 2 3 26 26 H 1.08999 * 109.47086 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47170 * 300.00113 * 1 2 3 28 28 H 1.08999 * 109.46990 * 240.00266 * 2 1 3 29 29 H 1.08990 * 109.47400 * 119.99899 * 2 1 3 30 30 H 1.08998 * 109.47272 * 205.68513 * 4 3 2 31 31 H 1.09005 * 109.46924 * 325.68564 * 4 3 2 32 32 H 1.08997 * 109.47148 * 85.68780 * 4 3 2 33 33 H 1.09001 * 117.49857 * 145.02689 * 5 3 2 34 34 H 1.08995 * 117.50028 * 0.02562 * 5 3 2 35 35 H 0.97006 * 119.99656 * 5.84399 * 10 8 6 36 36 H 1.08000 * 119.98673 * 0.02562 * 12 11 10 37 37 H 1.08008 * 119.68998 * 179.97438 * 13 12 11 38 38 H 1.07997 * 119.71194 * 179.97438 * 14 13 12 39 39 H 1.07999 * 120.02839 * 179.97438 * 15 14 13 40 40 H 0.96998 * 120.00563 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.1851 2.4450 0.7781 5 6 2.7418 1.9438 -1.2638 6 6 3.5550 1.6562 0.0006 7 1 3.9428 2.5110 0.5547 8 6 4.4307 0.4298 0.0006 9 8 3.9282 -0.6741 -0.0004 10 7 5.7722 0.5596 0.0016 11 6 6.5802 -0.5670 -0.1153 12 6 6.0974 -1.7130 -0.7281 13 6 6.9048 -2.8292 -0.8420 14 6 8.2019 -2.8171 -0.3465 15 6 8.7026 -1.7026 0.2613 16 6 7.9033 -0.5509 0.3849 17 6 8.4152 0.6073 1.0066 18 1 7.7660 1.2328 1.6013 19 6 9.7644 0.9460 0.8527 20 7 10.5722 0.1406 0.2115 21 14 10.4122 2.5478 1.5626 22 1 10.8850 2.3183 2.9515 23 1 11.5403 3.0378 0.7304 24 1 9.3264 3.5608 1.5703 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.3350 3.4444 0.3697 31 1 0.1337 2.1707 0.6908 32 1 1.4776 2.4340 1.8280 33 1 2.5946 2.9876 -1.5408 34 1 2.8399 1.2460 -2.0953 35 1 6.1743 1.4381 0.0879 36 1 5.0902 -1.7335 -1.1175 37 1 6.5229 -3.7192 -1.3201 38 1 8.8199 -3.6975 -0.4430 39 1 9.7126 -1.7032 0.6438 40 1 11.5072 0.3754 0.1045 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344357632.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:45 Heat of formation + Delta-G solvation = -13.588019 kcal Electronic energy + Delta-G solvation = -20845.301173 eV Core-core repulsion = 17817.549662 eV Total energy + Delta-G solvation = -3027.751511 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.55136 -39.66527 -38.08059 -35.47117 -35.42024 -33.12165 -31.48231 -30.41064 -29.03158 -27.19824 -25.31081 -24.65105 -23.21821 -22.26748 -20.88607 -19.83191 -19.16621 -18.10293 -17.83486 -16.91265 -16.25088 -16.01165 -15.71021 -15.32526 -15.07859 -14.84294 -14.56140 -14.27132 -14.06645 -13.91079 -13.63427 -13.14202 -12.93687 -12.84976 -12.78550 -12.71998 -12.53570 -12.12168 -12.03338 -11.94673 -11.72937 -11.58321 -11.10378 -11.01459 -10.95200 -10.68495 -10.18921 -9.23907 -8.73789 -8.43351 -6.35670 0.80808 1.05566 1.41903 1.50868 1.55995 1.76968 2.23637 2.39127 2.79693 2.86301 3.64293 3.69193 3.79983 3.89553 4.12137 4.20548 4.48958 4.51227 4.62006 4.63666 4.74568 4.74906 4.82545 4.91387 4.98789 5.06612 5.11318 5.16367 5.21627 5.27512 5.31840 5.34591 5.43886 5.47036 5.66660 5.79727 5.86500 6.14993 6.18239 6.25967 6.66110 6.78511 6.97375 7.03056 7.43647 8.42954 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019591 B = 0.005259 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.863915 B = 5322.935844 C = 6520.390602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.075 4.075 3 C -0.087 4.087 4 C -0.118 4.118 5 C -0.132 4.132 6 C -0.198 4.198 7 H 0.141 0.859 8 C 0.520 3.480 9 O -0.563 6.563 10 N -0.637 5.637 11 C 0.027 3.973 12 C -0.120 4.120 13 C -0.216 4.216 14 C -0.129 4.129 15 C -0.161 4.161 16 C 0.061 3.939 17 C -0.493 4.493 18 H 0.079 0.921 19 C 0.032 3.968 20 N -0.840 5.840 21 Si 0.987 3.013 22 H -0.268 1.268 23 H -0.273 1.273 24 H -0.252 1.252 25 H 0.064 0.936 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.134 0.866 34 H 0.083 0.917 35 H 0.411 0.589 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.019 8.112 -0.500 15.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.087 4.087 4 C -0.175 4.175 5 C -0.170 4.170 6 C -0.219 4.219 7 H 0.159 0.841 8 C 0.310 3.690 9 O -0.443 6.443 10 N -0.279 5.279 11 C -0.068 4.068 12 C -0.140 4.140 13 C -0.235 4.235 14 C -0.148 4.148 15 C -0.182 4.182 16 C 0.058 3.942 17 C -0.524 4.524 18 H 0.097 0.903 19 C -0.181 4.181 20 N -0.467 5.467 21 Si 0.808 3.192 22 H -0.193 1.193 23 H -0.198 1.198 24 H -0.175 1.175 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.152 0.848 34 H 0.102 0.898 35 H 0.248 0.752 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.159 7.361 -0.592 15.089 hybrid contribution 1.279 0.411 0.239 1.364 sum -11.880 7.771 -0.353 14.201 Atomic orbital electron populations 1.21885 0.94251 1.01651 1.02612 1.20968 0.95912 0.93112 1.01276 1.21708 0.89661 0.97390 0.99979 1.21535 0.99770 0.97024 0.99127 1.23302 0.99886 1.03711 0.90054 1.22389 0.94176 0.97772 1.07605 0.84100 1.20468 0.81993 0.90805 0.75708 1.90599 1.74029 1.28722 1.50922 1.43020 1.05428 1.09367 1.70044 1.18098 0.93563 0.89269 1.05906 1.20944 0.99538 0.93464 1.00100 1.20700 0.95071 0.98680 1.09073 1.20768 0.95586 0.98119 1.00312 1.21188 1.00795 0.92177 1.04017 1.17765 0.90348 0.93859 0.92247 1.19477 0.95371 1.08032 1.29503 0.90315 1.26728 0.96358 1.01707 0.93274 1.69848 1.06140 1.37115 1.33615 0.85124 0.78475 0.77241 0.78396 1.19278 1.19777 1.17524 0.91718 0.93143 0.91116 0.93628 0.93735 0.90554 0.89719 0.92206 0.84789 0.89814 0.75179 0.86608 0.86729 0.87036 0.86644 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.92 71.98 0.64 -2.29 16 2 C -0.08 -2.08 4.36 30.60 0.13 -1.94 16 3 C -0.09 -2.03 2.47 -52.18 -0.13 -2.15 16 4 C -0.12 -1.93 9.49 71.98 0.68 -1.25 16 5 C -0.13 -2.93 9.53 30.61 0.29 -2.64 16 6 C -0.20 -5.41 5.91 -11.52 -0.07 -5.48 16 7 H 0.14 3.19 8.14 -2.39 -0.02 3.17 16 8 C 0.52 20.01 7.39 87.66 0.65 20.66 16 9 O -0.56 -24.85 10.27 -3.05 -0.03 -24.88 16 10 N -0.64 -26.84 5.12 -302.28 -1.55 -28.39 16 11 C 0.03 1.34 6.46 38.87 0.25 1.59 16 12 C -0.12 -5.97 8.71 22.36 0.19 -5.78 16 13 C -0.22 -10.25 10.04 22.42 0.22 -10.02 16 14 C -0.13 -6.29 9.97 22.00 0.22 -6.07 16 15 C -0.16 -8.68 8.61 22.47 0.19 -8.49 16 16 C 0.06 3.30 5.56 -21.18 -0.12 3.19 16 17 C -0.49 -25.31 8.17 23.38 0.19 -25.12 16 18 H 0.08 3.81 7.45 -2.91 -0.02 3.79 16 19 C 0.03 1.56 5.42 85.26 0.46 2.02 16 20 N -0.84 -43.25 10.62 21.83 0.23 -43.01 16 21 Si 0.99 36.84 29.56 68.60 2.03 38.86 16 22 H -0.27 -9.84 7.11 99.48 0.71 -9.14 16 23 H -0.27 -9.90 7.11 99.48 0.71 -9.20 16 24 H -0.25 -8.83 7.11 99.48 0.71 -8.13 16 25 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 1.19 6.45 -2.38 -0.02 1.17 16 28 H 0.04 1.48 7.01 -2.39 -0.02 1.46 16 29 H 0.04 1.48 7.26 -2.39 -0.02 1.47 16 30 H 0.08 0.97 7.90 -2.39 -0.02 0.95 16 31 H 0.08 1.17 5.59 -2.38 -0.01 1.16 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.13 2.08 8.05 -2.39 -0.02 2.06 16 34 H 0.08 2.12 8.05 -2.39 -0.02 2.10 16 35 H 0.41 15.74 7.70 -92.70 -0.71 15.03 16 36 H 0.12 5.70 5.79 -2.91 -0.02 5.68 16 37 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 38 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 39 H 0.12 6.45 6.16 -2.91 -0.02 6.43 16 40 H 0.28 13.36 8.30 -92.71 -0.77 12.59 16 Total: -1.00 -62.89 322.29 4.84 -58.05 By element: Atomic # 1 Polarization: 42.82 SS G_CDS: 0.34 Total: 43.15 kcal Atomic # 6 Polarization: -47.61 SS G_CDS: 3.82 Total: -43.78 kcal Atomic # 7 Polarization: -70.09 SS G_CDS: -1.32 Total: -71.40 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.03 Total: -24.88 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 2.03 Total: 38.86 kcal Total: -62.89 4.84 -58.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344357632.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.463 kcal (2) G-P(sol) polarization free energy of solvation -62.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds