Wall clock time and date at job start Mon Mar 30 2020 01:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47445 * 2 1 4 4 C 1.53005 * 115.54728 * 325.66834 * 3 2 1 5 5 C 1.53069 * 117.51703 * 111.38925 * 3 2 1 6 6 C 1.52993 * 117.49955 * 180.02562 * 3 2 1 7 7 H 1.09004 * 117.50216 * 144.99551 * 6 3 2 8 8 C 1.50705 * 117.50205 * 359.97438 * 6 3 2 9 9 O 1.21280 * 119.99698 * 0.08991 * 8 6 3 10 10 N 1.34777 * 120.00094 * 180.08894 * 8 6 3 11 11 C 1.39124 * 119.99914 * 183.74976 * 10 8 6 12 12 C 1.38647 * 120.28297 * 334.33124 * 11 10 8 13 13 C 1.38227 * 120.03596 * 180.02562 * 12 11 10 14 14 C 1.38868 * 120.61010 * 0.02562 * 13 12 11 15 15 C 1.36456 * 120.58193 * 359.97438 * 14 13 12 16 16 C 1.40743 * 119.94252 * 0.02562 * 15 14 13 17 17 C 1.41069 * 120.29822 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99395 * 145.58899 * 17 16 15 19 19 C 1.39953 * 120.00703 * 325.58438 * 17 16 15 20 20 N 1.30854 * 119.99580 * 354.57701 * 19 17 16 21 21 Si 1.86799 * 120.00513 * 174.56927 * 19 17 16 22 22 H 1.48501 * 109.47144 * 90.00110 * 21 19 17 23 23 H 1.48499 * 109.47283 * 210.00704 * 21 19 17 24 24 H 1.48504 * 109.46713 * 330.00575 * 21 19 17 25 25 H 1.08996 * 109.47081 * 300.00597 * 1 2 3 26 26 H 1.09000 * 109.46871 * 60.00031 * 1 2 3 27 27 H 1.08991 * 109.47458 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47221 * 240.00162 * 2 1 3 29 29 H 1.09000 * 109.46871 * 119.99969 * 2 1 3 30 30 H 1.09003 * 109.47161 * 274.32824 * 4 3 2 31 31 H 1.08999 * 109.47074 * 34.33291 * 4 3 2 32 32 H 1.09003 * 109.46811 * 154.32914 * 4 3 2 33 33 H 1.09010 * 117.51018 * 0.02562 * 5 3 2 34 34 H 1.08993 * 117.49797 * 214.96311 * 5 3 2 35 35 H 0.97001 * 120.00140 * 3.75163 * 10 8 6 36 36 H 1.08008 * 119.98580 * 0.02562 * 12 11 10 37 37 H 1.07998 * 119.69326 * 180.02562 * 13 12 11 38 38 H 1.08001 * 119.70527 * 180.27799 * 14 13 12 39 39 H 1.08001 * 120.03317 * 180.02562 * 15 14 13 40 40 H 0.96999 * 119.99925 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.1853 2.4446 -0.7786 5 6 2.7426 1.9442 1.2640 6 6 3.5550 1.6561 -0.0006 7 1 3.9426 2.5107 -0.5553 8 6 4.4307 0.4296 -0.0006 9 8 3.9283 -0.6742 -0.0017 10 7 5.7722 0.5594 0.0007 11 6 6.5805 -0.5703 -0.0780 12 6 6.1111 -1.7979 0.3634 13 6 6.9186 -2.9169 0.2833 14 6 8.2030 -2.8262 -0.2369 15 6 8.6903 -1.6306 -0.6786 16 6 7.8886 -0.4760 -0.6082 17 6 8.3850 0.7639 -1.0622 18 1 7.7186 1.4739 -1.5294 19 6 9.7408 1.0742 -0.9071 20 7 10.5265 0.2619 -0.2475 21 14 10.4291 2.6477 -1.6419 22 1 10.3196 3.7467 -0.6493 23 1 11.8558 2.4441 -1.9999 24 1 9.6587 3.0030 -2.8608 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.4778 2.4332 -1.8285 31 1 0.1340 2.1705 -0.6912 32 1 1.3352 3.4442 -0.3705 33 1 2.8418 1.2464 2.0956 34 1 2.5956 2.9881 1.5408 35 1 6.1742 1.4404 0.0566 36 1 5.1139 -1.8800 0.7702 37 1 6.5473 -3.8705 0.6284 38 1 8.8199 -3.7107 -0.2968 39 1 9.6904 -1.5703 -1.0819 40 1 11.4663 0.4767 -0.1403 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344357634.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:52 Heat of formation + Delta-G solvation = 0.916869 kcal Electronic energy + Delta-G solvation = -20840.503756 eV Core-core repulsion = 17813.381224 eV Total energy + Delta-G solvation = -3027.122532 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.09841 -38.13040 -36.55257 -33.72675 -33.58987 -32.07936 -29.58784 -28.75459 -28.01853 -25.33799 -23.90106 -23.65646 -21.44021 -20.57387 -19.37628 -18.63564 -17.31575 -16.61214 -16.15118 -15.20399 -14.89192 -14.63274 -14.17507 -14.08717 -13.88798 -13.21845 -13.13704 -12.92985 -12.57316 -12.27006 -12.08524 -11.78628 -11.78247 -11.62977 -11.30780 -11.16412 -11.06155 -10.98342 -10.76060 -10.49427 -10.08109 -9.95261 -9.70469 -9.57601 -9.26675 -9.23209 -8.51500 -7.30970 -6.91363 -6.62715 -4.41015 2.58155 2.86375 3.04683 3.08169 3.19494 3.29925 3.85133 3.91438 4.01046 4.66864 4.71114 4.86790 5.00685 5.09151 5.40091 5.45820 5.58002 5.63368 5.66520 5.74163 5.77493 5.82117 5.97513 6.07787 6.16705 6.29395 6.35398 6.46230 6.54728 6.62606 6.73536 6.95615 7.09640 7.17926 7.30941 7.69780 7.72293 7.99879 8.10166 8.14713 8.48097 8.58413 8.84225 8.87554 9.07332 10.24105 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019564 B = 0.005248 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.866515 B = 5334.403851 C = 6526.074328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.075 4.075 3 C -0.090 4.090 4 C -0.122 4.122 5 C -0.150 4.150 6 C -0.183 4.183 7 H 0.119 0.881 8 C 0.525 3.475 9 O -0.535 6.535 10 N -0.632 5.632 11 C 0.026 3.974 12 C -0.106 4.106 13 C -0.216 4.216 14 C -0.121 4.121 15 C -0.138 4.138 16 C 0.098 3.902 17 C -0.475 4.475 18 H 0.074 0.926 19 C 0.076 3.924 20 N -0.806 5.806 21 Si 0.909 3.091 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.263 1.263 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.405 0.595 36 H 0.125 0.875 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.119 0.881 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.643 5.464 0.731 12.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.113 4.113 3 C -0.091 4.091 4 C -0.179 4.179 5 C -0.188 4.188 6 C -0.205 4.205 7 H 0.137 0.863 8 C 0.313 3.687 9 O -0.414 6.414 10 N -0.272 5.272 11 C -0.068 4.068 12 C -0.126 4.126 13 C -0.236 4.236 14 C -0.140 4.140 15 C -0.158 4.158 16 C 0.094 3.906 17 C -0.506 4.506 18 H 0.092 0.908 19 C -0.140 4.140 20 N -0.433 5.433 21 Si 0.734 3.266 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.187 1.187 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.240 0.760 36 H 0.143 0.857 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.137 0.863 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.755 4.702 0.791 12.685 hybrid contribution 0.964 1.258 -0.270 1.608 sum -10.791 5.959 0.522 12.338 Atomic orbital electron populations 1.21939 0.96922 1.01127 1.01154 1.21076 0.93588 0.92486 1.04117 1.21549 0.90703 0.97505 0.99322 1.21506 0.99751 0.97009 0.99631 1.23198 1.02188 1.02124 0.91242 1.22396 0.93890 0.99344 1.04840 0.86309 1.19598 0.82378 0.89432 0.77324 1.90571 1.73726 1.26792 1.50321 1.42905 1.04871 1.09848 1.69624 1.17916 0.94055 0.86352 1.08470 1.21037 0.99755 0.91730 1.00066 1.20398 0.95545 0.97059 1.10598 1.20502 0.95291 0.97088 1.01125 1.20898 1.00534 0.90767 1.03556 1.17393 0.89486 0.93733 0.89957 1.19254 0.93712 1.01384 1.36263 0.90811 1.25812 0.96852 0.98187 0.93168 1.69783 1.06381 1.35687 1.31440 0.86295 0.78596 0.81559 0.80116 1.19593 1.20210 1.18716 0.93164 0.92752 0.93037 0.90621 0.90912 0.92134 0.91084 0.92589 0.88403 0.88250 0.75988 0.85717 0.89209 0.89412 0.86274 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.92 37.16 0.33 -1.35 16 2 C -0.08 -1.05 4.36 -26.73 -0.12 -1.17 16 3 C -0.09 -1.14 2.47 -154.47 -0.38 -1.52 16 4 C -0.12 -1.23 9.49 37.16 0.35 -0.87 16 5 C -0.15 -1.83 9.53 -26.67 -0.25 -2.08 16 6 C -0.18 -2.64 5.91 -91.75 -0.54 -3.18 16 7 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 8 C 0.53 9.98 7.48 -10.98 -0.08 9.89 16 9 O -0.54 -11.37 10.03 5.56 0.06 -11.32 16 10 N -0.63 -13.11 5.10 -9.48 -0.05 -13.16 16 11 C 0.03 0.64 6.48 -83.17 -0.54 0.10 16 12 C -0.11 -2.58 8.78 -39.43 -0.35 -2.92 16 13 C -0.22 -5.10 10.04 -39.35 -0.39 -5.50 16 14 C -0.12 -2.91 9.96 -39.99 -0.40 -3.31 16 15 C -0.14 -3.57 8.57 -39.28 -0.34 -3.91 16 16 C 0.10 2.55 5.51 -106.65 -0.59 1.97 16 17 C -0.48 -11.99 8.19 -37.87 -0.31 -12.30 16 18 H 0.07 1.76 7.46 -52.49 -0.39 1.37 16 19 C 0.08 1.85 5.31 -17.33 -0.09 1.76 16 20 N -0.81 -20.48 10.97 55.55 0.61 -19.87 16 21 Si 0.91 18.18 29.56 -169.99 -5.03 13.15 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.53 6.45 -51.93 -0.33 0.20 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 1.23 7.25 -51.93 -0.38 0.85 16 29 H 0.07 1.14 7.02 -51.93 -0.36 0.77 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.64 5.58 -51.93 -0.29 0.35 16 32 H 0.06 0.49 7.90 -51.93 -0.41 0.08 16 33 H 0.10 1.27 8.05 -51.92 -0.42 0.86 16 34 H 0.10 0.98 8.05 -51.93 -0.42 0.57 16 35 H 0.40 7.69 7.74 -40.82 -0.32 7.37 16 36 H 0.13 3.00 5.53 -52.48 -0.29 2.70 16 37 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 38 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.12 3.17 6.47 -52.49 -0.34 2.83 16 40 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 LS Contribution 322.48 15.07 4.86 4.86 Total: -1.00 -28.16 322.48 -8.87 -37.02 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -5.62 Total: 13.70 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -3.70 Total: -24.39 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: 0.56 Total: -33.03 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.06 Total: -11.32 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.16 -8.87 -37.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344357634.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.940 kcal (2) G-P(sol) polarization free energy of solvation -28.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds