Wall clock time and date at job start Mon Mar 30 2020 01:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47445 * 2 1 4 4 C 1.53005 * 115.54728 * 325.66834 * 3 2 1 5 5 C 1.53069 * 117.51703 * 111.38925 * 3 2 1 6 6 C 1.52993 * 117.49955 * 180.02562 * 3 2 1 7 7 H 1.09004 * 117.50216 * 144.99551 * 6 3 2 8 8 C 1.50705 * 117.50205 * 359.97438 * 6 3 2 9 9 O 1.21280 * 119.99698 * 0.08991 * 8 6 3 10 10 N 1.34777 * 120.00094 * 180.08894 * 8 6 3 11 11 C 1.39124 * 119.99914 * 183.74976 * 10 8 6 12 12 C 1.38647 * 120.28297 * 334.33124 * 11 10 8 13 13 C 1.38227 * 120.03596 * 180.02562 * 12 11 10 14 14 C 1.38868 * 120.61010 * 0.02562 * 13 12 11 15 15 C 1.36456 * 120.58193 * 359.97438 * 14 13 12 16 16 C 1.40743 * 119.94252 * 0.02562 * 15 14 13 17 17 C 1.41069 * 120.29822 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99395 * 145.58899 * 17 16 15 19 19 C 1.39953 * 120.00703 * 325.58438 * 17 16 15 20 20 N 1.30854 * 119.99580 * 354.57701 * 19 17 16 21 21 Si 1.86799 * 120.00513 * 174.56927 * 19 17 16 22 22 H 1.48501 * 109.47144 * 90.00110 * 21 19 17 23 23 H 1.48499 * 109.47283 * 210.00704 * 21 19 17 24 24 H 1.48504 * 109.46713 * 330.00575 * 21 19 17 25 25 H 1.08996 * 109.47081 * 300.00597 * 1 2 3 26 26 H 1.09000 * 109.46871 * 60.00031 * 1 2 3 27 27 H 1.08991 * 109.47458 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47221 * 240.00162 * 2 1 3 29 29 H 1.09000 * 109.46871 * 119.99969 * 2 1 3 30 30 H 1.09003 * 109.47161 * 274.32824 * 4 3 2 31 31 H 1.08999 * 109.47074 * 34.33291 * 4 3 2 32 32 H 1.09003 * 109.46811 * 154.32914 * 4 3 2 33 33 H 1.09010 * 117.51018 * 0.02562 * 5 3 2 34 34 H 1.08993 * 117.49797 * 214.96311 * 5 3 2 35 35 H 0.97001 * 120.00140 * 3.75163 * 10 8 6 36 36 H 1.08008 * 119.98580 * 0.02562 * 12 11 10 37 37 H 1.07998 * 119.69326 * 180.02562 * 13 12 11 38 38 H 1.08001 * 119.70527 * 180.27799 * 14 13 12 39 39 H 1.08001 * 120.03317 * 180.02562 * 15 14 13 40 40 H 0.96999 * 119.99925 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.1853 2.4446 -0.7786 5 6 2.7426 1.9442 1.2640 6 6 3.5550 1.6561 -0.0006 7 1 3.9426 2.5107 -0.5553 8 6 4.4307 0.4296 -0.0006 9 8 3.9283 -0.6742 -0.0017 10 7 5.7722 0.5594 0.0007 11 6 6.5805 -0.5703 -0.0780 12 6 6.1111 -1.7979 0.3634 13 6 6.9186 -2.9169 0.2833 14 6 8.2030 -2.8262 -0.2369 15 6 8.6903 -1.6306 -0.6786 16 6 7.8886 -0.4760 -0.6082 17 6 8.3850 0.7639 -1.0622 18 1 7.7186 1.4739 -1.5294 19 6 9.7408 1.0742 -0.9071 20 7 10.5265 0.2619 -0.2475 21 14 10.4291 2.6477 -1.6419 22 1 10.3196 3.7467 -0.6493 23 1 11.8558 2.4441 -1.9999 24 1 9.6587 3.0030 -2.8608 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.4778 2.4332 -1.8285 31 1 0.1340 2.1705 -0.6912 32 1 1.3352 3.4442 -0.3705 33 1 2.8418 1.2464 2.0956 34 1 2.5956 2.9881 1.5408 35 1 6.1742 1.4404 0.0566 36 1 5.1139 -1.8800 0.7702 37 1 6.5473 -3.8705 0.6284 38 1 8.8199 -3.7107 -0.2968 39 1 9.6904 -1.5703 -1.0819 40 1 11.4663 0.4767 -0.1403 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344357634.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:51 Heat of formation + Delta-G solvation = -13.042709 kcal Electronic energy + Delta-G solvation = -20841.109089 eV Core-core repulsion = 17813.381224 eV Total energy + Delta-G solvation = -3027.727864 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.55250 -39.66164 -38.07838 -35.47221 -35.41135 -33.12097 -31.49519 -30.41901 -29.02612 -27.18375 -25.29292 -24.64879 -23.23703 -22.26808 -20.90793 -19.83117 -19.14947 -18.11319 -17.81564 -16.93689 -16.20825 -16.06083 -15.67148 -15.39047 -15.08123 -14.83153 -14.57280 -14.26567 -14.03559 -13.90005 -13.58583 -13.19627 -12.97604 -12.84030 -12.77400 -12.71652 -12.53541 -12.16005 -12.03829 -11.97399 -11.71109 -11.54096 -11.07699 -11.03848 -10.95150 -10.65853 -10.11267 -9.26126 -8.77017 -8.46707 -6.34046 0.82239 1.05491 1.41762 1.51120 1.54721 1.75339 2.23305 2.40669 2.79484 2.85528 3.64331 3.69955 3.80366 3.89380 4.12930 4.21005 4.49432 4.52151 4.62362 4.65200 4.74999 4.75536 4.83061 4.91561 4.98866 5.07138 5.11770 5.16655 5.21668 5.27660 5.30424 5.33752 5.43923 5.47107 5.66915 5.80752 5.84444 6.13890 6.16595 6.26376 6.65531 6.78431 6.96348 7.03061 7.44132 8.42626 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019564 B = 0.005248 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.866515 B = 5334.403851 C = 6526.074328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.075 4.075 3 C -0.087 4.087 4 C -0.118 4.118 5 C -0.132 4.132 6 C -0.199 4.199 7 H 0.140 0.860 8 C 0.521 3.479 9 O -0.562 6.562 10 N -0.636 5.636 11 C 0.021 3.979 12 C -0.122 4.122 13 C -0.219 4.219 14 C -0.126 4.126 15 C -0.161 4.161 16 C 0.069 3.931 17 C -0.496 4.496 18 H 0.080 0.920 19 C 0.035 3.965 20 N -0.839 5.839 21 Si 0.984 3.016 22 H -0.260 1.260 23 H -0.274 1.274 24 H -0.259 1.259 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.134 0.866 35 H 0.411 0.589 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.105 0.895 40 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.997 7.757 0.662 15.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.087 4.087 4 C -0.175 4.175 5 C -0.169 4.169 6 C -0.220 4.220 7 H 0.158 0.842 8 C 0.310 3.690 9 O -0.442 6.442 10 N -0.277 5.277 11 C -0.074 4.074 12 C -0.142 4.142 13 C -0.239 4.239 14 C -0.145 4.145 15 C -0.181 4.181 16 C 0.065 3.935 17 C -0.526 4.526 18 H 0.098 0.902 19 C -0.178 4.178 20 N -0.466 5.466 21 Si 0.806 3.194 22 H -0.185 1.185 23 H -0.199 1.199 24 H -0.183 1.183 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.152 0.848 35 H 0.248 0.752 36 H 0.142 0.858 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.135 6.999 0.730 14.901 hybrid contribution 1.326 0.441 -0.208 1.413 sum -11.809 7.441 0.521 13.967 Atomic orbital electron populations 1.21882 0.94275 1.01654 1.02595 1.20970 0.95895 0.93093 1.01307 1.21715 0.89613 0.97405 1.00012 1.21536 0.99787 0.97053 0.99097 1.23319 0.99865 1.03725 0.90021 1.22398 0.94176 0.97772 1.07614 0.84199 1.20469 0.81966 0.90807 0.75716 1.90555 1.74001 1.28537 1.51117 1.42976 1.05431 1.09133 1.70146 1.18099 0.94147 0.87650 1.07460 1.21219 0.99977 0.92292 1.00726 1.20712 0.95294 0.97969 1.09910 1.20737 0.95785 0.97364 1.00622 1.20926 1.00299 0.91844 1.05006 1.17742 0.90410 0.94409 0.90945 1.19484 0.94740 1.01404 1.36998 0.90203 1.26688 0.96663 1.01512 0.92984 1.69865 1.06911 1.37601 1.32224 0.85159 0.77671 0.77267 0.79328 1.18510 1.19853 1.18317 0.91698 0.91178 0.93126 0.93742 0.93539 0.92285 0.89702 0.90560 0.89687 0.84807 0.75198 0.85771 0.86751 0.87033 0.87702 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.92 71.98 0.64 -2.29 16 2 C -0.08 -2.07 4.36 30.59 0.13 -1.93 16 3 C -0.09 -2.03 2.47 -52.16 -0.13 -2.15 16 4 C -0.12 -1.95 9.49 71.98 0.68 -1.27 16 5 C -0.13 -2.89 9.53 30.63 0.29 -2.60 16 6 C -0.20 -5.42 5.91 -11.53 -0.07 -5.49 16 7 H 0.14 3.22 8.14 -2.38 -0.02 3.20 16 8 C 0.52 19.97 7.48 87.66 0.66 20.63 16 9 O -0.56 -24.61 10.03 -3.03 -0.03 -24.64 16 10 N -0.64 -26.78 5.10 -302.28 -1.54 -28.33 16 11 C 0.02 1.08 6.48 38.88 0.25 1.33 16 12 C -0.12 -6.08 8.78 22.36 0.20 -5.88 16 13 C -0.22 -10.43 10.04 22.42 0.23 -10.21 16 14 C -0.13 -6.15 9.96 22.00 0.22 -5.93 16 15 C -0.16 -8.61 8.57 22.47 0.19 -8.41 16 16 C 0.07 3.68 5.51 -21.18 -0.12 3.57 16 17 C -0.50 -25.40 8.19 23.38 0.19 -25.21 16 18 H 0.08 3.85 7.46 -2.91 -0.02 3.83 16 19 C 0.03 1.69 5.31 85.25 0.45 2.15 16 20 N -0.84 -43.31 10.97 21.83 0.24 -43.07 16 21 Si 0.98 36.90 29.56 68.60 2.03 38.93 16 22 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 23 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 24 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.07 1.18 6.45 -2.39 -0.02 1.17 16 27 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.04 1.48 7.25 -2.39 -0.02 1.46 16 29 H 0.05 1.49 7.02 -2.39 -0.02 1.47 16 30 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.18 5.58 -2.39 -0.01 1.17 16 32 H 0.08 0.98 7.90 -2.39 -0.02 0.96 16 33 H 0.08 2.11 8.05 -2.38 -0.02 2.09 16 34 H 0.13 2.05 8.05 -2.39 -0.02 2.03 16 35 H 0.41 15.76 7.74 -92.71 -0.72 15.04 16 36 H 0.12 6.15 5.53 -2.91 -0.02 6.13 16 37 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 38 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 39 H 0.11 5.81 6.47 -2.91 -0.02 5.80 16 40 H 0.28 13.43 8.30 -92.71 -0.77 12.66 16 Total: -1.00 -62.78 322.48 4.85 -57.93 By element: Atomic # 1 Polarization: 42.55 SS G_CDS: 0.33 Total: 42.88 kcal Atomic # 6 Polarization: -47.53 SS G_CDS: 3.82 Total: -43.70 kcal Atomic # 7 Polarization: -70.09 SS G_CDS: -1.30 Total: -71.39 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.03 Total: -24.64 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.93 kcal Total: -62.78 4.85 -57.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344357634.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.883 kcal (2) G-P(sol) polarization free energy of solvation -62.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds