Wall clock time and date at job start Mon Mar 30 2020 02:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46970 * 2 1 4 4 N 1.46501 * 109.46967 * 179.97438 * 3 2 1 5 5 C 1.36871 * 119.99707 * 96.10167 * 4 3 2 6 6 H 1.08002 * 120.00114 * 215.92665 * 5 4 3 7 7 C 1.39050 * 120.00015 * 35.92534 * 5 4 3 8 8 N 1.31364 * 120.00102 * 22.01316 * 7 5 4 9 9 Si 1.86803 * 119.99964 * 202.01094 * 7 5 4 10 10 H 1.48491 * 109.47100 * 60.00095 * 9 7 5 11 11 H 1.48508 * 109.46972 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47248 * 299.99714 * 9 7 5 13 13 C 1.34773 * 120.00060 * 276.10131 * 4 3 2 14 14 O 1.21591 * 120.00209 * 2.72318 * 13 4 3 15 15 C 1.47734 * 119.99611 * 182.71891 * 13 4 3 16 16 C 1.39554 * 120.05052 * 27.04260 * 15 13 4 17 17 C 1.37918 * 119.76503 * 179.67842 * 16 15 13 18 18 C 1.38272 * 120.09595 * 0.62275 * 17 16 15 19 19 C 1.38643 * 120.54329 * 359.65905 * 18 17 16 20 20 C 1.37956 * 119.93574 * 0.02766 * 19 18 17 21 21 C 1.51344 * 109.83188 * 179.97438 * 20 19 18 22 22 C 1.54355 * 105.15271 * 342.83614 * 21 20 19 23 23 C 1.51399 * 130.29972 * 180.02562 * 19 18 17 24 24 H 1.09003 * 109.46897 * 300.00122 * 1 2 3 25 25 H 1.08998 * 109.47054 * 59.99872 * 1 2 3 26 26 H 1.08994 * 109.47246 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46999 * 240.00293 * 2 1 3 28 28 H 1.08998 * 109.47054 * 120.00128 * 2 1 3 29 29 H 1.08997 * 109.47020 * 60.00306 * 3 2 1 30 30 H 1.08998 * 109.47337 * 299.99956 * 3 2 1 31 31 H 0.96997 * 120.00320 * 179.97438 * 8 7 5 32 32 H 1.08002 * 120.12013 * 359.97438 * 16 15 13 33 33 H 1.07995 * 119.95555 * 180.28132 * 17 16 15 34 34 H 1.07997 * 119.73082 * 179.68080 * 18 17 16 35 35 H 1.09006 * 110.30716 * 101.75884 * 21 20 19 36 36 H 1.09000 * 110.30791 * 223.91189 * 21 20 19 37 37 H 1.09000 * 110.82781 * 268.08468 * 22 21 20 38 38 H 1.09002 * 110.99683 * 144.59763 * 22 21 20 39 39 H 1.08995 * 110.30636 * 316.13369 * 23 19 18 40 40 H 1.09006 * 110.29911 * 78.19504 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1898 1.5684 -1.1778 6 1 5.1158 1.0322 -1.3242 7 6 3.6933 2.3866 -2.1865 8 7 2.8486 3.3496 -1.8951 9 14 4.2275 2.1165 -3.9560 10 1 3.8460 0.7470 -4.3847 11 1 3.5611 3.1136 -4.8319 12 1 5.7005 2.2750 -4.0581 13 6 4.1784 1.3187 1.1615 14 8 3.5711 1.1572 2.2024 15 6 5.6545 1.3790 1.1691 16 6 6.3300 2.0911 0.1771 17 6 7.7079 2.1491 0.1937 18 6 8.4175 1.4930 1.1826 19 6 7.7553 0.7781 2.1688 20 6 6.3771 0.7176 2.1673 21 6 5.8984 -0.1165 3.3359 22 6 7.1364 -0.9162 3.7946 23 6 8.3011 -0.0112 3.3398 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 2.5025 3.9206 -2.5986 32 1 5.7756 2.5991 -0.5981 33 1 8.2335 2.7031 -0.5698 34 1 9.4966 1.5380 1.1870 35 1 5.5446 0.5278 4.1408 36 1 5.1067 -0.7946 3.0175 37 1 7.1795 -1.8841 3.2952 38 1 7.1420 -1.0402 4.8776 39 1 9.1503 -0.6174 3.0244 40 1 8.5957 0.6618 4.1451 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353009948.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:42 Heat of formation + Delta-G solvation = -14.909031 kcal Electronic energy + Delta-G solvation = -21487.201752 eV Core-core repulsion = 18459.392957 eV Total energy + Delta-G solvation = -3027.808794 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.82768 -38.11962 -35.24940 -34.96477 -32.91660 -31.45483 -30.60683 -28.47230 -27.07484 -25.72490 -24.82332 -22.51594 -21.07818 -20.54232 -20.13245 -19.05362 -17.28189 -15.83103 -15.38875 -15.30396 -14.72109 -14.61383 -14.23090 -13.93874 -13.62437 -13.42998 -12.74320 -12.57648 -12.45290 -12.40310 -11.88563 -11.68121 -11.42179 -11.29662 -11.27178 -10.99231 -10.79639 -10.77773 -10.66290 -10.58816 -10.50347 -10.37032 -10.13784 -9.76288 -9.06002 -8.44262 -8.05610 -7.90626 -7.52569 -6.47191 -4.09012 1.73182 2.02955 3.08005 3.16337 3.19068 3.87518 4.03549 4.54249 4.71423 4.83022 4.98767 5.05159 5.27465 5.52208 5.61563 5.67221 5.78565 5.82352 5.86947 5.92776 6.02978 6.06772 6.14271 6.23593 6.30775 6.47788 6.49945 6.52925 6.54056 6.66343 6.70961 6.75067 6.82017 7.05376 7.11053 7.20502 7.28933 7.34599 7.42355 7.66928 7.85368 8.32256 8.98135 9.47654 9.90753 10.53471 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016524 B = 0.007386 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.122750 B = 3790.229559 C = 5096.656262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.119 3.881 4 N -0.429 5.429 5 C -0.341 4.341 6 H 0.096 0.904 7 C 0.043 3.957 8 N -0.852 5.852 9 Si 0.909 3.091 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.504 3.496 14 O -0.600 6.600 15 C -0.088 4.088 16 C -0.075 4.075 17 C -0.146 4.146 18 C -0.102 4.102 19 C -0.129 4.129 20 C -0.054 4.054 21 C -0.072 4.072 22 C -0.123 4.123 23 C -0.074 4.074 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.273 0.727 32 H 0.171 0.829 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.103 -4.461 3.072 8.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C -0.005 4.005 4 N -0.145 5.145 5 C -0.469 4.469 6 H 0.114 0.886 7 C -0.164 4.164 8 N -0.487 5.487 9 Si 0.735 3.265 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.294 3.706 14 O -0.487 6.487 15 C -0.091 4.091 16 C -0.093 4.093 17 C -0.164 4.164 18 C -0.121 4.121 19 C -0.129 4.129 20 C -0.055 4.055 21 C -0.109 4.109 22 C -0.161 4.161 23 C -0.111 4.111 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.188 0.812 33 H 0.137 0.863 34 H 0.128 0.872 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.638 -4.366 3.449 7.921 hybrid contribution 0.292 0.017 -1.128 1.165 sum 5.930 -4.349 2.321 7.711 Atomic orbital electron populations 1.21652 0.96567 1.00438 1.01363 1.21842 0.94716 0.99428 1.01412 1.21406 0.81229 0.94515 1.03324 1.43339 1.04829 1.61401 1.04966 1.19517 1.09235 1.26682 0.91446 0.88612 1.25352 0.97083 0.93693 1.00255 1.69925 1.30552 1.14289 1.33937 0.86274 0.79318 0.78547 0.82368 1.19675 1.20773 1.19397 1.18318 0.86764 0.81779 0.83779 1.90591 1.69826 1.56098 1.32168 1.19693 0.94139 0.99784 0.95460 1.22526 0.93778 0.95567 0.97444 1.21041 0.94670 1.01537 0.99178 1.20609 0.98878 0.98010 0.94593 1.20384 0.94173 1.00951 0.97389 1.20518 0.93331 0.96584 0.95047 1.20921 0.97130 0.97325 0.95476 1.22340 0.94795 0.98364 1.00552 1.20946 0.97947 0.96960 0.95239 0.93121 0.93038 0.93636 0.92439 0.92674 0.92949 0.87907 0.91711 0.81242 0.86340 0.87224 0.90187 0.90677 0.91423 0.91066 0.91480 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.91 37.16 0.37 -2.05 16 2 C -0.14 -2.80 6.21 -26.73 -0.17 -2.97 16 3 C 0.12 2.83 4.85 -4.04 -0.02 2.81 16 4 N -0.43 -10.82 2.54 -115.92 -0.29 -11.12 16 5 C -0.34 -8.40 6.08 -15.00 -0.09 -8.49 16 6 H 0.10 2.32 6.17 -52.49 -0.32 1.99 16 7 C 0.04 1.04 4.86 -17.45 -0.08 0.96 16 8 N -0.85 -21.60 11.48 55.50 0.64 -20.96 16 9 Si 0.91 18.73 29.61 -169.99 -5.03 13.70 16 10 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 11 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 12 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 13 C 0.50 12.79 7.36 -12.38 -0.09 12.70 16 14 O -0.60 -16.12 15.29 5.29 0.08 -16.04 16 15 C -0.09 -1.99 5.56 -104.92 -0.58 -2.58 16 16 C -0.08 -1.59 7.75 -39.21 -0.30 -1.89 16 17 C -0.15 -2.59 10.03 -39.69 -0.40 -2.99 16 18 C -0.10 -1.68 10.03 -39.42 -0.40 -2.08 16 19 C -0.13 -2.22 6.13 -104.23 -0.64 -2.86 16 20 C -0.05 -1.07 5.99 -103.81 -0.62 -1.70 16 21 C -0.07 -1.27 5.55 -26.86 -0.15 -1.42 16 22 C -0.12 -1.66 7.08 -25.31 -0.18 -1.84 16 23 C -0.07 -1.00 6.77 -26.83 -0.18 -1.18 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.05 1.20 8.09 -51.93 -0.42 0.78 16 29 H 0.05 1.30 7.65 -51.93 -0.40 0.91 16 30 H 0.10 2.55 5.51 -51.93 -0.29 2.27 16 31 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 32 H 0.17 3.87 5.20 -52.49 -0.27 3.59 16 33 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.07 1.43 7.96 -51.93 -0.41 1.02 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 322.69 15.07 4.86 4.86 Total: -1.00 -27.92 322.69 -9.18 -37.10 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -5.90 Total: 8.02 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -3.54 Total: -15.57 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 0.34 Total: -32.08 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.08 Total: -16.04 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.92 -9.18 -37.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353009948.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.193 kcal (2) G-P(sol) polarization free energy of solvation -27.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds