Wall clock time and date at job start Mon Mar 30 2020 02:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46970 * 2 1 4 4 N 1.46501 * 109.46967 * 179.97438 * 3 2 1 5 5 C 1.36871 * 119.99707 * 96.10167 * 4 3 2 6 6 H 1.08002 * 120.00114 * 215.92665 * 5 4 3 7 7 C 1.39050 * 120.00015 * 35.92534 * 5 4 3 8 8 N 1.31364 * 120.00102 * 22.01316 * 7 5 4 9 9 Si 1.86803 * 119.99964 * 202.01094 * 7 5 4 10 10 H 1.48491 * 109.47100 * 60.00095 * 9 7 5 11 11 H 1.48508 * 109.46972 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47248 * 299.99714 * 9 7 5 13 13 C 1.34773 * 120.00060 * 276.10131 * 4 3 2 14 14 O 1.21591 * 120.00209 * 2.72318 * 13 4 3 15 15 C 1.47734 * 119.99611 * 182.71891 * 13 4 3 16 16 C 1.39554 * 120.05052 * 27.04260 * 15 13 4 17 17 C 1.37918 * 119.76503 * 179.67842 * 16 15 13 18 18 C 1.38272 * 120.09595 * 0.62275 * 17 16 15 19 19 C 1.38643 * 120.54329 * 359.65905 * 18 17 16 20 20 C 1.37956 * 119.93574 * 0.02766 * 19 18 17 21 21 C 1.51344 * 109.83188 * 179.97438 * 20 19 18 22 22 C 1.54355 * 105.15271 * 342.83614 * 21 20 19 23 23 C 1.51399 * 130.29972 * 180.02562 * 19 18 17 24 24 H 1.09003 * 109.46897 * 300.00122 * 1 2 3 25 25 H 1.08998 * 109.47054 * 59.99872 * 1 2 3 26 26 H 1.08994 * 109.47246 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46999 * 240.00293 * 2 1 3 28 28 H 1.08998 * 109.47054 * 120.00128 * 2 1 3 29 29 H 1.08997 * 109.47020 * 60.00306 * 3 2 1 30 30 H 1.08998 * 109.47337 * 299.99956 * 3 2 1 31 31 H 0.96997 * 120.00320 * 179.97438 * 8 7 5 32 32 H 1.08002 * 120.12013 * 359.97438 * 16 15 13 33 33 H 1.07995 * 119.95555 * 180.28132 * 17 16 15 34 34 H 1.07997 * 119.73082 * 179.68080 * 18 17 16 35 35 H 1.09006 * 110.30716 * 101.75884 * 21 20 19 36 36 H 1.09000 * 110.30791 * 223.91189 * 21 20 19 37 37 H 1.09000 * 110.82781 * 268.08468 * 22 21 20 38 38 H 1.09002 * 110.99683 * 144.59763 * 22 21 20 39 39 H 1.08995 * 110.30636 * 316.13369 * 23 19 18 40 40 H 1.09006 * 110.29911 * 78.19504 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1898 1.5684 -1.1778 6 1 5.1158 1.0322 -1.3242 7 6 3.6933 2.3866 -2.1865 8 7 2.8486 3.3496 -1.8951 9 14 4.2275 2.1165 -3.9560 10 1 3.8460 0.7470 -4.3847 11 1 3.5611 3.1136 -4.8319 12 1 5.7005 2.2750 -4.0581 13 6 4.1784 1.3187 1.1615 14 8 3.5711 1.1572 2.2024 15 6 5.6545 1.3790 1.1691 16 6 6.3300 2.0911 0.1771 17 6 7.7079 2.1491 0.1937 18 6 8.4175 1.4930 1.1826 19 6 7.7553 0.7781 2.1688 20 6 6.3771 0.7176 2.1673 21 6 5.8984 -0.1165 3.3359 22 6 7.1364 -0.9162 3.7946 23 6 8.3011 -0.0112 3.3398 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 2.5025 3.9206 -2.5986 32 1 5.7756 2.5991 -0.5981 33 1 8.2335 2.7031 -0.5698 34 1 9.4966 1.5380 1.1870 35 1 5.5446 0.5278 4.1408 36 1 5.1067 -0.7946 3.0175 37 1 7.1795 -1.8841 3.2952 38 1 7.1420 -1.0402 4.8776 39 1 9.1503 -0.6174 3.0244 40 1 8.5957 0.6618 4.1451 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353009948.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:41 Heat of formation + Delta-G solvation = -28.330745 kcal Electronic energy + Delta-G solvation = -21487.783761 eV Core-core repulsion = 18459.392957 eV Total energy + Delta-G solvation = -3028.390803 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.39467 -39.83370 -37.07897 -36.42963 -34.63570 -33.30499 -32.11396 -29.82986 -28.47489 -27.45268 -26.60425 -24.04825 -22.60261 -21.97616 -21.64217 -20.87113 -19.02175 -17.64393 -16.95954 -16.65613 -16.32142 -16.29760 -15.75253 -15.57927 -15.38668 -15.02700 -14.32545 -14.18988 -13.91112 -13.66270 -13.38296 -13.30704 -13.15688 -12.99820 -12.62608 -12.52848 -12.45937 -12.22300 -12.09495 -12.02455 -11.97988 -11.82101 -11.63822 -11.56811 -10.93660 -10.34370 -9.62072 -9.50580 -9.26719 -8.34934 -6.03092 0.19733 0.57314 1.42578 1.47564 1.55772 2.13103 2.29120 2.87679 2.92502 3.20930 3.58990 3.76318 4.09844 4.19134 4.21528 4.26922 4.30817 4.34018 4.45023 4.51874 4.67968 4.75686 4.82843 4.87001 4.91651 4.97818 5.01042 5.04668 5.13664 5.16727 5.28301 5.29283 5.33150 5.36829 5.42131 5.50383 5.69232 5.70276 5.80232 5.94616 6.20112 6.40824 7.06580 7.54017 7.97944 8.67475 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016524 B = 0.007386 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.122750 B = 3790.229559 C = 5096.656262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.125 4.125 3 C 0.120 3.880 4 N -0.440 5.440 5 C -0.350 4.350 6 H 0.096 0.904 7 C 0.008 3.992 8 N -0.886 5.886 9 Si 0.975 3.025 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.257 1.257 13 C 0.486 3.514 14 O -0.631 6.631 15 C -0.126 4.126 16 C -0.095 4.095 17 C -0.142 4.142 18 C -0.090 4.090 19 C -0.124 4.124 20 C -0.080 4.080 21 C -0.075 4.075 22 C -0.112 4.112 23 C -0.068 4.068 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.037 0.963 29 H 0.029 0.971 30 H 0.094 0.906 31 H 0.275 0.725 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.156 0.844 35 H 0.067 0.933 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.035 -5.517 2.725 10.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.164 4.164 3 C -0.004 4.004 4 N -0.156 5.156 5 C -0.477 4.477 6 H 0.114 0.886 7 C -0.196 4.196 8 N -0.522 5.522 9 Si 0.798 3.202 10 H -0.195 1.195 11 H -0.205 1.205 12 H -0.181 1.181 13 C 0.278 3.722 14 O -0.521 6.521 15 C -0.129 4.129 16 C -0.113 4.113 17 C -0.160 4.160 18 C -0.108 4.108 19 C -0.124 4.124 20 C -0.081 4.081 21 C -0.112 4.112 22 C -0.149 4.149 23 C -0.105 4.105 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.162 0.838 33 H 0.166 0.834 34 H 0.173 0.827 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.576 -5.425 3.096 10.609 hybrid contribution -0.584 0.389 -0.952 1.183 sum 7.992 -5.036 2.144 9.687 Atomic orbital electron populations 1.21601 0.93328 1.02428 1.01825 1.21727 0.97498 0.96808 1.00322 1.21386 0.81178 0.96279 1.01511 1.43605 1.05324 1.61235 1.05403 1.19675 1.09574 1.27073 0.91403 0.88609 1.26125 0.96898 0.92875 1.03712 1.70020 1.31818 1.15161 1.35189 0.85255 0.79483 0.78217 0.77212 1.19537 1.20514 1.18126 1.18984 0.88489 0.81339 0.83403 1.90528 1.70905 1.57636 1.33035 1.19709 0.92548 1.02635 0.97964 1.22289 0.95490 0.96460 0.97060 1.21349 0.93092 1.01315 1.00220 1.21088 1.01051 0.95755 0.92906 1.20953 0.92831 1.00246 0.98346 1.20888 0.95102 0.97039 0.95115 1.20966 0.98662 0.96997 0.94556 1.22350 0.92206 0.97987 1.02347 1.21053 0.98389 0.97015 0.94055 0.92958 0.92285 0.90840 0.92685 0.94392 0.95288 0.88859 0.91477 0.83772 0.83439 0.82666 0.91448 0.93432 0.90570 0.88305 0.88360 0.88935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 9.91 71.98 0.71 -3.82 16 2 C -0.12 -5.39 6.21 30.60 0.19 -5.20 16 3 C 0.12 6.08 4.85 86.38 0.42 6.50 16 4 N -0.44 -23.58 2.54 -638.93 -1.62 -25.20 16 5 C -0.35 -17.95 6.08 84.10 0.51 -17.44 16 6 H 0.10 4.82 6.17 -2.91 -0.02 4.81 16 7 C 0.01 0.39 4.86 84.96 0.41 0.80 16 8 N -0.89 -46.48 11.48 21.68 0.25 -46.23 16 9 Si 0.98 38.59 29.61 68.60 2.03 40.62 16 10 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 11 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 12 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 13 C 0.49 26.42 7.36 86.75 0.64 27.06 16 14 O -0.63 -36.54 15.29 -4.00 -0.06 -36.60 16 15 C -0.13 -5.96 5.56 -20.06 -0.11 -6.07 16 16 C -0.09 -4.09 7.75 22.51 0.17 -3.91 16 17 C -0.14 -4.76 10.03 22.20 0.22 -4.53 16 18 C -0.09 -2.61 10.03 22.37 0.22 -2.38 16 19 C -0.12 -3.92 6.13 -19.61 -0.12 -4.04 16 20 C -0.08 -3.25 5.99 -19.34 -0.12 -3.36 16 21 C -0.07 -2.70 5.55 30.51 0.17 -2.53 16 22 C -0.11 -2.71 7.08 31.51 0.22 -2.49 16 23 C -0.07 -1.54 6.77 30.53 0.21 -1.34 16 24 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.04 1.74 8.09 -2.39 -0.02 1.72 16 29 H 0.03 1.55 7.65 -2.39 -0.02 1.53 16 30 H 0.09 4.89 5.51 -2.39 -0.01 4.88 16 31 H 0.28 13.54 8.31 -92.71 -0.77 12.77 16 32 H 0.14 6.89 5.20 -2.91 -0.02 6.87 16 33 H 0.15 4.00 8.06 -2.91 -0.02 3.97 16 34 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 35 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 36 H 0.05 1.92 7.96 -2.39 -0.02 1.90 16 37 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -65.42 322.69 5.38 -60.04 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 1.03 Total: 30.14 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 3.76 Total: -22.76 kcal Atomic # 7 Polarization: -70.06 SS G_CDS: -1.37 Total: -71.43 kcal Atomic # 8 Polarization: -36.54 SS G_CDS: -0.06 Total: -36.60 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.62 kcal Total: -65.42 5.38 -60.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353009948.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.704 kcal (2) G-P(sol) polarization free energy of solvation -65.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds